Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_013595

Experiment: L-Malic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_013590 and TX73_013595 are separated by 241 nucleotidesTX73_013595 and TX73_013600 are separated by 466 nucleotides TX73_013590: TX73_013590 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 2,984,783 to 2,985,991 _013590 TX73_013595: TX73_013595 - alpha/beta hydrolase, at 2,986,233 to 2,987,219 _013595 TX73_013600: TX73_013600 - carboxylesterase/lipase family protein, at 2,987,686 to 2,989,347 _013600 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2985.233 kb on - strand, within TX73_013590at 2985.264 kb on + strand, within TX73_013590at 2985.286 kb on - strand, within TX73_013590at 2985.311 kb on + strand, within TX73_013590at 2985.383 kb on - strand, within TX73_013590at 2985.400 kb on + strand, within TX73_013590at 2985.425 kb on - strand, within TX73_013590at 2985.483 kb on + strand, within TX73_013590at 2985.563 kb on + strand, within TX73_013590at 2985.619 kb on + strand, within TX73_013590at 2985.670 kb on + strand, within TX73_013590at 2985.689 kb on - strand, within TX73_013590at 2985.800 kb on + strand, within TX73_013590at 2985.805 kb on + strand, within TX73_013590at 2985.808 kb on - strand, within TX73_013590at 2985.892 kb on + strandat 2985.892 kb on + strandat 2985.892 kb on + strandat 2985.897 kb on + strandat 2985.900 kb on - strandat 2985.900 kb on - strandat 2985.900 kb on - strandat 2985.900 kb on - strandat 2985.900 kb on - strandat 2985.939 kb on + strandat 2985.939 kb on + strandat 2985.939 kb on + strandat 2985.939 kb on + strandat 2985.939 kb on + strandat 2985.939 kb on + strandat 2985.939 kb on + strandat 2985.939 kb on + strandat 2985.947 kb on - strandat 2985.947 kb on - strandat 2985.947 kb on - strandat 2985.947 kb on - strandat 2985.991 kb on + strandat 2986.049 kb on + strandat 2986.141 kb on + strandat 2986.141 kb on + strandat 2986.153 kb on + strandat 2986.153 kb on + strandat 2986.161 kb on - strandat 2986.180 kb on + strandat 2986.223 kb on - strandat 2986.223 kb on - strandat 2986.223 kb on - strandat 2986.226 kb on + strandat 2986.261 kb on + strandat 2986.275 kb on + strandat 2986.304 kb on + strandat 2986.336 kb on + strand, within TX73_013595at 2986.372 kb on - strand, within TX73_013595at 2986.379 kb on + strand, within TX73_013595at 2986.393 kb on - strand, within TX73_013595at 2986.420 kb on - strand, within TX73_013595at 2986.503 kb on - strand, within TX73_013595at 2986.503 kb on - strand, within TX73_013595at 2986.505 kb on + strand, within TX73_013595at 2986.505 kb on - strand, within TX73_013595at 2986.510 kb on + strand, within TX73_013595at 2986.513 kb on - strand, within TX73_013595at 2986.513 kb on - strand, within TX73_013595at 2986.533 kb on - strand, within TX73_013595at 2986.533 kb on - strand, within TX73_013595at 2986.543 kb on + strand, within TX73_013595at 2986.570 kb on - strand, within TX73_013595at 2986.615 kb on + strand, within TX73_013595at 2986.682 kb on - strand, within TX73_013595at 2986.707 kb on - strand, within TX73_013595at 2986.725 kb on + strand, within TX73_013595at 2986.725 kb on + strand, within TX73_013595at 2986.785 kb on - strand, within TX73_013595at 2986.804 kb on - strand, within TX73_013595at 2986.804 kb on - strand, within TX73_013595at 2986.845 kb on + strand, within TX73_013595at 2986.851 kb on + strand, within TX73_013595at 2986.861 kb on + strand, within TX73_013595at 2986.913 kb on + strand, within TX73_013595at 2986.920 kb on - strand, within TX73_013595at 2986.920 kb on - strand, within TX73_013595at 2986.939 kb on - strand, within TX73_013595at 2986.962 kb on + strand, within TX73_013595at 2986.962 kb on + strand, within TX73_013595at 2986.970 kb on - strand, within TX73_013595at 2987.027 kb on + strand, within TX73_013595at 2987.053 kb on + strand, within TX73_013595at 2987.055 kb on + strand, within TX73_013595at 2987.063 kb on - strand, within TX73_013595at 2987.146 kb on + strandat 2987.228 kb on + strandat 2987.236 kb on - strandat 2987.236 kb on - strandat 2987.242 kb on - strandat 2987.273 kb on - strandat 2987.298 kb on - strandat 2987.308 kb on - strandat 2987.314 kb on - strandat 2987.382 kb on - strandat 2987.423 kb on + strandat 2987.427 kb on - strandat 2987.442 kb on - strandat 2987.604 kb on + strandat 2987.619 kb on - strandat 2987.671 kb on - strandat 2987.671 kb on - strandat 2987.671 kb on - strandat 2987.671 kb on - strandat 2987.723 kb on - strandat 2987.820 kb on + strandat 2987.829 kb on + strandat 2987.862 kb on + strand, within TX73_013600at 2987.862 kb on + strand, within TX73_013600at 2987.862 kb on + strand, within TX73_013600at 2987.869 kb on + strand, within TX73_013600at 2987.870 kb on - strand, within TX73_013600at 2987.870 kb on - strand, within TX73_013600at 2987.870 kb on - strand, within TX73_013600at 2987.874 kb on + strand, within TX73_013600at 2987.906 kb on - strand, within TX73_013600at 2988.042 kb on + strand, within TX73_013600at 2988.047 kb on + strand, within TX73_013600at 2988.114 kb on + strand, within TX73_013600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C); anaerobic
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2,985,233 - TX73_013590 0.37 -0.6
2,985,264 + TX73_013590 0.40 -0.7
2,985,286 - TX73_013590 0.42 +0.4
2,985,311 + TX73_013590 0.44 +0.2
2,985,383 - TX73_013590 0.50 +0.7
2,985,400 + TX73_013590 0.51 -0.9
2,985,425 - TX73_013590 0.53 -0.6
2,985,483 + TX73_013590 0.58 -0.9
2,985,563 + TX73_013590 0.65 +0.1
2,985,619 + TX73_013590 0.69 -0.4
2,985,670 + TX73_013590 0.73 +0.8
2,985,689 - TX73_013590 0.75 -0.7
2,985,800 + TX73_013590 0.84 -1.6
2,985,805 + TX73_013590 0.85 -0.5
2,985,808 - TX73_013590 0.85 +0.9
2,985,892 + +1.8
2,985,892 + +0.4
2,985,892 + +0.2
2,985,897 + -0.1
2,985,900 - -0.6
2,985,900 - +0.8
2,985,900 - -0.6
2,985,900 - +0.2
2,985,900 - +0.6
2,985,939 + -0.7
2,985,939 + -1.2
2,985,939 + +1.1
2,985,939 + +0.1
2,985,939 + +0.0
2,985,939 + -1.1
2,985,939 + +0.1
2,985,939 + -0.6
2,985,947 - +0.7
2,985,947 - +0.0
2,985,947 - +0.3
2,985,947 - +1.2
2,985,991 + +0.2
2,986,049 + +0.9
2,986,141 + +0.9
2,986,141 + +0.5
2,986,153 + -1.3
2,986,153 + -0.8
2,986,161 - +0.0
2,986,180 + +0.5
2,986,223 - -0.2
2,986,223 - +0.7
2,986,223 - +0.1
2,986,226 + +0.1
2,986,261 + -0.4
2,986,275 + +0.1
2,986,304 + +0.4
2,986,336 + TX73_013595 0.10 +0.8
2,986,372 - TX73_013595 0.14 -0.6
2,986,379 + TX73_013595 0.15 -1.1
2,986,393 - TX73_013595 0.16 -1.5
2,986,420 - TX73_013595 0.19 +0.0
2,986,503 - TX73_013595 0.27 -1.5
2,986,503 - TX73_013595 0.27 -0.6
2,986,505 + TX73_013595 0.28 +0.0
2,986,505 - TX73_013595 0.28 -0.2
2,986,510 + TX73_013595 0.28 +2.8
2,986,513 - TX73_013595 0.28 -0.7
2,986,513 - TX73_013595 0.28 -0.5
2,986,533 - TX73_013595 0.30 +0.3
2,986,533 - TX73_013595 0.30 +0.0
2,986,543 + TX73_013595 0.31 +0.5
2,986,570 - TX73_013595 0.34 -0.8
2,986,615 + TX73_013595 0.39 +0.1
2,986,682 - TX73_013595 0.45 -1.2
2,986,707 - TX73_013595 0.48 +0.5
2,986,725 + TX73_013595 0.50 -0.5
2,986,725 + TX73_013595 0.50 -0.6
2,986,785 - TX73_013595 0.56 -0.2
2,986,804 - TX73_013595 0.58 +0.1
2,986,804 - TX73_013595 0.58 +0.8
2,986,845 + TX73_013595 0.62 +0.2
2,986,851 + TX73_013595 0.63 -0.2
2,986,861 + TX73_013595 0.64 +0.9
2,986,913 + TX73_013595 0.69 +0.5
2,986,920 - TX73_013595 0.70 -0.4
2,986,920 - TX73_013595 0.70 -0.4
2,986,939 - TX73_013595 0.72 -0.6
2,986,962 + TX73_013595 0.74 -0.1
2,986,962 + TX73_013595 0.74 +0.6
2,986,970 - TX73_013595 0.75 +0.5
2,987,027 + TX73_013595 0.80 -0.4
2,987,053 + TX73_013595 0.83 -0.1
2,987,055 + TX73_013595 0.83 -0.2
2,987,063 - TX73_013595 0.84 +0.4
2,987,146 + -0.0
2,987,228 + +2.3
2,987,236 - +0.4
2,987,236 - -1.1
2,987,242 - +0.1
2,987,273 - +0.5
2,987,298 - +0.0
2,987,308 - +0.8
2,987,314 - -1.6
2,987,382 - +0.6
2,987,423 + +0.6
2,987,427 - -0.4
2,987,442 - -0.7
2,987,604 + +1.2
2,987,619 - -1.0
2,987,671 - -0.2
2,987,671 - +0.3
2,987,671 - -0.1
2,987,671 - +0.5
2,987,723 - +0.8
2,987,820 + -1.0
2,987,829 + +0.4
2,987,862 + TX73_013600 0.11 -0.9
2,987,862 + TX73_013600 0.11 +0.2
2,987,862 + TX73_013600 0.11 +0.9
2,987,869 + TX73_013600 0.11 -0.4
2,987,870 - TX73_013600 0.11 -3.1
2,987,870 - TX73_013600 0.11 +0.1
2,987,870 - TX73_013600 0.11 +0.6
2,987,874 + TX73_013600 0.11 +0.2
2,987,906 - TX73_013600 0.13 +0.7
2,988,042 + TX73_013600 0.21 +0.5
2,988,047 + TX73_013600 0.22 +0.4
2,988,114 + TX73_013600 0.26 +0.8

Or see this region's nucleotide sequence