Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003590

Experiment: L-Malic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003585 and TX73_003590 are separated by 3 nucleotidesTX73_003590 and TX73_003595 are separated by 2 nucleotidesTX73_003595 and TX73_003600 are separated by 111 nucleotides TX73_003585: TX73_003585 - carbon-phosphorus lyase complex subunit PhnI, at 767,902 to 768,999 _003585 TX73_003590: TX73_003590 - phosphonate C-P lyase system protein PhnH, at 769,003 to 769,605 _003590 TX73_003595: TX73_003595 - phosphonate C-P lyase system protein PhnG, at 769,608 to 770,081 _003595 TX73_003600: TX73_003600 - phosphonate metabolism transcriptional regulator PhnF, at 770,193 to 770,921 _003600 Position (kb) 769 770Strain fitness (log2 ratio) -1 0 1at 768.028 kb on + strand, within TX73_003585at 768.037 kb on - strand, within TX73_003585at 768.099 kb on + strand, within TX73_003585at 768.122 kb on - strand, within TX73_003585at 768.127 kb on - strand, within TX73_003585at 768.159 kb on + strand, within TX73_003585at 768.159 kb on + strand, within TX73_003585at 768.159 kb on + strand, within TX73_003585at 768.167 kb on - strand, within TX73_003585at 768.174 kb on - strand, within TX73_003585at 768.220 kb on - strand, within TX73_003585at 768.230 kb on + strand, within TX73_003585at 768.230 kb on - strand, within TX73_003585at 768.246 kb on + strand, within TX73_003585at 768.254 kb on - strand, within TX73_003585at 768.298 kb on + strand, within TX73_003585at 768.350 kb on + strand, within TX73_003585at 768.365 kb on + strand, within TX73_003585at 768.365 kb on + strand, within TX73_003585at 768.373 kb on - strand, within TX73_003585at 768.425 kb on - strand, within TX73_003585at 768.478 kb on + strand, within TX73_003585at 768.486 kb on - strand, within TX73_003585at 768.553 kb on - strand, within TX73_003585at 768.618 kb on + strand, within TX73_003585at 768.626 kb on - strand, within TX73_003585at 768.630 kb on + strand, within TX73_003585at 768.631 kb on + strand, within TX73_003585at 768.639 kb on - strand, within TX73_003585at 768.644 kb on - strand, within TX73_003585at 768.648 kb on + strand, within TX73_003585at 768.720 kb on - strand, within TX73_003585at 768.723 kb on + strand, within TX73_003585at 768.723 kb on + strand, within TX73_003585at 768.731 kb on - strand, within TX73_003585at 768.745 kb on - strand, within TX73_003585at 768.794 kb on + strand, within TX73_003585at 768.882 kb on + strand, within TX73_003585at 768.890 kb on - strandat 769.009 kb on + strandat 769.068 kb on - strand, within TX73_003590at 769.142 kb on + strand, within TX73_003590at 769.182 kb on + strand, within TX73_003590at 769.194 kb on + strand, within TX73_003590at 769.287 kb on + strand, within TX73_003590at 769.289 kb on + strand, within TX73_003590at 769.337 kb on - strand, within TX73_003590at 769.376 kb on + strand, within TX73_003590at 769.406 kb on + strand, within TX73_003590at 769.414 kb on - strand, within TX73_003590at 769.423 kb on - strand, within TX73_003590at 769.434 kb on + strand, within TX73_003590at 769.441 kb on + strand, within TX73_003590at 769.451 kb on + strand, within TX73_003590at 769.459 kb on - strand, within TX73_003590at 769.464 kb on - strand, within TX73_003590at 769.498 kb on + strand, within TX73_003590at 769.499 kb on + strand, within TX73_003590at 769.511 kb on - strand, within TX73_003590at 769.566 kb on - strandat 769.606 kb on + strandat 769.618 kb on + strandat 769.730 kb on + strand, within TX73_003595at 769.733 kb on + strand, within TX73_003595at 769.735 kb on + strand, within TX73_003595at 769.735 kb on + strand, within TX73_003595at 769.767 kb on - strand, within TX73_003595at 769.786 kb on - strand, within TX73_003595at 769.792 kb on - strand, within TX73_003595at 769.808 kb on - strand, within TX73_003595at 769.816 kb on + strand, within TX73_003595at 769.839 kb on + strand, within TX73_003595at 769.847 kb on - strand, within TX73_003595at 769.883 kb on - strand, within TX73_003595at 769.928 kb on + strand, within TX73_003595at 769.936 kb on - strand, within TX73_003595at 769.938 kb on + strand, within TX73_003595at 769.975 kb on - strand, within TX73_003595at 770.198 kb on - strandat 770.210 kb on + strandat 770.210 kb on + strandat 770.212 kb on + strandat 770.218 kb on - strandat 770.272 kb on + strand, within TX73_003600at 770.306 kb on + strand, within TX73_003600at 770.336 kb on + strand, within TX73_003600at 770.344 kb on - strand, within TX73_003600at 770.344 kb on - strand, within TX73_003600at 770.346 kb on - strand, within TX73_003600at 770.356 kb on + strand, within TX73_003600at 770.442 kb on - strand, within TX73_003600at 770.447 kb on + strand, within TX73_003600at 770.512 kb on - strand, within TX73_003600at 770.560 kb on - strand, within TX73_003600

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C); anaerobic
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768,028 + TX73_003585 0.11 +0.3
768,037 - TX73_003585 0.12 +0.0
768,099 + TX73_003585 0.18 +0.3
768,122 - TX73_003585 0.20 +0.7
768,127 - TX73_003585 0.20 +0.2
768,159 + TX73_003585 0.23 +0.9
768,159 + TX73_003585 0.23 +0.9
768,159 + TX73_003585 0.23 -0.5
768,167 - TX73_003585 0.24 -0.8
768,174 - TX73_003585 0.25 +0.1
768,220 - TX73_003585 0.29 +0.6
768,230 + TX73_003585 0.30 +0.0
768,230 - TX73_003585 0.30 +1.1
768,246 + TX73_003585 0.31 +1.0
768,254 - TX73_003585 0.32 -0.1
768,298 + TX73_003585 0.36 +0.4
768,350 + TX73_003585 0.41 +0.4
768,365 + TX73_003585 0.42 +1.6
768,365 + TX73_003585 0.42 -0.2
768,373 - TX73_003585 0.43 +0.2
768,425 - TX73_003585 0.48 +0.3
768,478 + TX73_003585 0.52 -0.0
768,486 - TX73_003585 0.53 -0.1
768,553 - TX73_003585 0.59 +0.8
768,618 + TX73_003585 0.65 -1.1
768,626 - TX73_003585 0.66 -0.8
768,630 + TX73_003585 0.66 +0.1
768,631 + TX73_003585 0.66 +0.2
768,639 - TX73_003585 0.67 -0.2
768,644 - TX73_003585 0.68 +0.9
768,648 + TX73_003585 0.68 +0.2
768,720 - TX73_003585 0.74 -0.2
768,723 + TX73_003585 0.75 +0.0
768,723 + TX73_003585 0.75 +0.4
768,731 - TX73_003585 0.76 -0.8
768,745 - TX73_003585 0.77 -1.6
768,794 + TX73_003585 0.81 +1.1
768,882 + TX73_003585 0.89 -0.6
768,890 - -0.5
769,009 + -0.2
769,068 - TX73_003590 0.11 +0.8
769,142 + TX73_003590 0.23 -0.2
769,182 + TX73_003590 0.30 -0.4
769,194 + TX73_003590 0.32 -1.3
769,287 + TX73_003590 0.47 +0.3
769,289 + TX73_003590 0.47 +0.1
769,337 - TX73_003590 0.55 -0.8
769,376 + TX73_003590 0.62 -1.0
769,406 + TX73_003590 0.67 +0.2
769,414 - TX73_003590 0.68 +0.9
769,423 - TX73_003590 0.70 +0.6
769,434 + TX73_003590 0.71 -0.2
769,441 + TX73_003590 0.73 -0.0
769,451 + TX73_003590 0.74 -1.0
769,459 - TX73_003590 0.76 -0.1
769,464 - TX73_003590 0.76 +0.6
769,498 + TX73_003590 0.82 +0.5
769,499 + TX73_003590 0.82 +0.3
769,511 - TX73_003590 0.84 +0.3
769,566 - -0.2
769,606 + +0.6
769,618 + +0.6
769,730 + TX73_003595 0.26 -0.1
769,733 + TX73_003595 0.26 -0.1
769,735 + TX73_003595 0.27 +0.1
769,735 + TX73_003595 0.27 +1.2
769,767 - TX73_003595 0.34 -0.2
769,786 - TX73_003595 0.38 +0.7
769,792 - TX73_003595 0.39 +0.6
769,808 - TX73_003595 0.42 +0.7
769,816 + TX73_003595 0.44 +0.4
769,839 + TX73_003595 0.49 -0.3
769,847 - TX73_003595 0.50 -0.6
769,883 - TX73_003595 0.58 -0.5
769,928 + TX73_003595 0.68 +0.4
769,936 - TX73_003595 0.69 +0.9
769,938 + TX73_003595 0.70 +0.3
769,975 - TX73_003595 0.77 -0.3
770,198 - -0.4
770,210 + +0.3
770,210 + +0.5
770,212 + +0.4
770,218 - -0.3
770,272 + TX73_003600 0.11 +1.4
770,306 + TX73_003600 0.16 -0.2
770,336 + TX73_003600 0.20 -0.5
770,344 - TX73_003600 0.21 -1.3
770,344 - TX73_003600 0.21 +1.1
770,346 - TX73_003600 0.21 +0.4
770,356 + TX73_003600 0.22 -0.2
770,442 - TX73_003600 0.34 +0.2
770,447 + TX73_003600 0.35 -0.6
770,512 - TX73_003600 0.44 -0.2
770,560 - TX73_003600 0.50 +0.2

Or see this region's nucleotide sequence