Experiment: L-Leucine (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_019450 and TX73_019455 are separated by 40 nucleotides TX73_019455 and TX73_019460 are separated by 245 nucleotides TX73_019460 and TX73_019465 are separated by 20 nucleotides TX73_019465 and TX73_019470 overlap by 8 nucleotides
TX73_019450: TX73_019450 - malate/lactate/ureidoglycolate dehydrogenase, at 4,251,975 to 4,253,060
_019450
TX73_019455: TX73_019455 - homoprotocatechuate degradation operon regulator HpaR, at 4,253,101 to 4,253,640
_019455
TX73_019460: TX73_019460 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 4,253,886 to 4,254,692
_019460
TX73_019465: TX73_019465 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 4,254,713 to 4,255,111
_019465
TX73_019470: TX73_019470 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 4,255,104 to 4,256,645
_019470
Position (kb) 4253
4254
4255 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4252.917 kb on + strand, within TX73_019450 at 4252.932 kb on + strand, within TX73_019450 at 4253.015 kb on - strand at 4253.063 kb on - strand at 4253.072 kb on + strand at 4253.122 kb on - strand at 4253.142 kb on + strand at 4253.232 kb on + strand, within TX73_019455 at 4253.312 kb on + strand, within TX73_019455 at 4253.320 kb on + strand, within TX73_019455 at 4253.320 kb on + strand, within TX73_019455 at 4253.348 kb on - strand, within TX73_019455 at 4253.421 kb on + strand, within TX73_019455 at 4253.456 kb on - strand, within TX73_019455 at 4253.458 kb on + strand, within TX73_019455 at 4253.471 kb on - strand, within TX73_019455 at 4253.508 kb on + strand, within TX73_019455 at 4253.583 kb on + strand, within TX73_019455 at 4253.666 kb on + strand at 4253.728 kb on - strand at 4253.758 kb on - strand at 4254.002 kb on + strand, within TX73_019460 at 4254.007 kb on + strand, within TX73_019460 at 4254.041 kb on + strand, within TX73_019460 at 4254.178 kb on + strand, within TX73_019460 at 4254.230 kb on - strand, within TX73_019460 at 4254.237 kb on - strand, within TX73_019460 at 4254.309 kb on + strand, within TX73_019460 at 4254.316 kb on + strand, within TX73_019460 at 4254.324 kb on - strand, within TX73_019460 at 4254.371 kb on - strand, within TX73_019460 at 4254.392 kb on + strand, within TX73_019460 at 4254.660 kb on + strand at 4254.828 kb on + strand, within TX73_019465 at 4254.838 kb on - strand, within TX73_019465 at 4254.951 kb on + strand, within TX73_019465 at 4254.953 kb on + strand, within TX73_019465 at 4254.984 kb on + strand, within TX73_019465 at 4255.021 kb on + strand, within TX73_019465 at 4255.092 kb on - strand at 4255.139 kb on + strand at 4255.175 kb on + strand at 4255.289 kb on + strand, within TX73_019470 at 4255.307 kb on - strand, within TX73_019470 at 4255.393 kb on - strand, within TX73_019470 at 4255.453 kb on - strand, within TX73_019470 at 4255.553 kb on - strand, within TX73_019470 at 4255.553 kb on - strand, within TX73_019470 at 4255.553 kb on - strand, within TX73_019470 at 4255.630 kb on - strand, within TX73_019470 at 4255.691 kb on + strand, within TX73_019470
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (C); anaerobic remove 4,252,917 + TX73_019450 0.87 +0.6 4,252,932 + TX73_019450 0.88 +0.3 4,253,015 - -0.9 4,253,063 - -0.0 4,253,072 + -1.4 4,253,122 - +0.3 4,253,142 + +2.9 4,253,232 + TX73_019455 0.24 -1.0 4,253,312 + TX73_019455 0.39 -0.1 4,253,320 + TX73_019455 0.41 -1.3 4,253,320 + TX73_019455 0.41 -0.0 4,253,348 - TX73_019455 0.46 -1.6 4,253,421 + TX73_019455 0.59 -0.6 4,253,456 - TX73_019455 0.66 -0.2 4,253,458 + TX73_019455 0.66 -0.1 4,253,471 - TX73_019455 0.69 -1.0 4,253,508 + TX73_019455 0.75 +1.2 4,253,583 + TX73_019455 0.89 -1.7 4,253,666 + +0.6 4,253,728 - +0.6 4,253,758 - -0.7 4,254,002 + TX73_019460 0.14 -0.5 4,254,007 + TX73_019460 0.15 +0.4 4,254,041 + TX73_019460 0.19 -0.7 4,254,178 + TX73_019460 0.36 +0.5 4,254,230 - TX73_019460 0.43 -0.9 4,254,237 - TX73_019460 0.43 -0.4 4,254,309 + TX73_019460 0.52 -0.2 4,254,316 + TX73_019460 0.53 +0.0 4,254,324 - TX73_019460 0.54 -0.5 4,254,371 - TX73_019460 0.60 -0.2 4,254,392 + TX73_019460 0.63 -0.6 4,254,660 + -0.5 4,254,828 + TX73_019465 0.29 -0.1 4,254,838 - TX73_019465 0.31 -0.6 4,254,951 + TX73_019465 0.60 -0.2 4,254,953 + TX73_019465 0.60 -0.2 4,254,984 + TX73_019465 0.68 -0.3 4,255,021 + TX73_019465 0.77 -0.6 4,255,092 - -0.4 4,255,139 + +2.9 4,255,175 + +0.7 4,255,289 + TX73_019470 0.12 -2.1 4,255,307 - TX73_019470 0.13 +0.4 4,255,393 - TX73_019470 0.19 -0.8 4,255,453 - TX73_019470 0.23 -0.9 4,255,553 - TX73_019470 0.29 -0.0 4,255,553 - TX73_019470 0.29 -0.9 4,255,553 - TX73_019470 0.29 +0.1 4,255,630 - TX73_019470 0.34 -0.6 4,255,691 + TX73_019470 0.38 +1.5
Or see this region's nucleotide sequence