Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014840

Experiment: Fumarate (C); anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C); anaerobic
3,240,304	+		TX73_014835	0.38	-0.2
3,240,304	+		TX73_014835	0.38	-3.0
3,240,309	+		TX73_014835	0.38	-0.8
3,240,311	-		TX73_014835	0.39	-2.5
3,240,313	+		TX73_014835	0.39	-1.9
3,240,317	-		TX73_014835	0.39	-2.0
3,240,358	+		TX73_014835	0.42	-1.1
3,240,368	+		TX73_014835	0.43	-0.5
3,240,374	-		TX73_014835	0.43	-4.3
3,240,381	+		TX73_014835	0.44	-2.1
3,240,381	+		TX73_014835	0.44	-0.9
3,240,382	+		TX73_014835	0.44	-2.2
3,240,389	-		TX73_014835	0.44	-0.9
3,240,389	-		TX73_014835	0.44	-0.9
3,240,395	-		TX73_014835	0.45	-1.4
3,240,411	-		TX73_014835	0.46	-0.1
3,240,443	+		TX73_014835	0.48	-2.4
3,240,451	+		TX73_014835	0.48	-4.1
3,240,469	-		TX73_014835	0.50	-0.6
3,240,479	-		TX73_014835	0.50	-0.6
3,240,490	-		TX73_014835	0.51	-1.4
3,240,493	+		TX73_014835	0.51	-0.7
3,240,557	-		TX73_014835	0.56	-2.0
3,240,558	+		TX73_014835	0.56	-1.9
3,240,558	+		TX73_014835	0.56	-1.1
3,240,558	+		TX73_014835	0.56	-1.7
3,240,558	+		TX73_014835	0.56	-1.7
3,240,572	+		TX73_014835	0.57	-0.4
3,240,607	-		TX73_014835	0.59	-0.3
3,240,613	+		TX73_014835	0.60	-2.7
3,240,621	-		TX73_014835	0.60	-0.2
3,240,621	-		TX73_014835	0.60	-1.1
3,240,649	-		TX73_014835	0.62	-0.4
3,240,669	+		TX73_014835	0.64	-0.6
3,240,672	-		TX73_014835	0.64	-1.9
3,240,675	+		TX73_014835	0.64	-0.7
3,240,683	-		TX73_014835	0.65	-1.9
3,240,702	+		TX73_014835	0.66	+0.0
3,240,705	-		TX73_014835	0.66	-1.1
3,240,735	-		TX73_014835	0.68	-1.7
3,240,772	+		TX73_014835	0.71	-1.2
3,240,795	+		TX73_014835	0.73	-1.3
3,240,797	+		TX73_014835	0.73	-0.7
3,240,805	-		TX73_014835	0.73	-0.1
3,240,818	-		TX73_014835	0.74	-2.3
3,240,844	+		TX73_014835	0.76	-2.6
3,240,852	-		TX73_014835	0.77	-3.1
3,240,854	-		TX73_014835	0.77	-1.7
3,240,854	-		TX73_014835	0.77	-1.5
3,240,878	-		TX73_014835	0.78	-1.2
3,240,905	+		TX73_014835	0.80	-0.1
3,240,905	+		TX73_014835	0.80	-1.9
3,240,905	+		TX73_014835	0.80	-3.3
3,240,913	-		TX73_014835	0.81	-0.3
3,240,913	-		TX73_014835	0.81	-0.3
3,240,913	-		TX73_014835	0.81	-2.2
3,240,915	-		TX73_014835	0.81	-2.5
3,240,937	+		TX73_014835	0.83	-1.3
3,240,956	-		TX73_014835	0.84	-1.1
3,241,027	-		TX73_014835	0.89	-1.9
3,241,031	+		TX73_014835	0.89	-1.7
3,241,046	-				-1.1
3,241,092	+				-2.9
3,241,106	-				-1.3
3,241,113	+				-2.2
3,241,193	+				+0.2
3,241,203	-				+0.5
3,241,203	-				-0.6
3,241,230	-				+0.1
3,241,242	+				-2.7
3,241,248	+				+0.2
3,241,248	+				+0.8
3,241,249	+				-0.0
3,241,265	-				-0.3
3,241,312	+				-0.9
3,241,320	-				-2.1
3,241,347	+				-0.1
3,241,347	+				-0.8
3,241,355	-				-2.0
3,241,365	-				-1.0
3,241,367	+				-2.4
3,241,375	-				-1.1
3,241,381	-				-3.2
3,241,386	+				-1.0
3,241,403	-		TX73_014840	0.10	-1.1
3,241,403	-		TX73_014840	0.10	-1.1
3,241,436	+		TX73_014840	0.13	-2.3
3,241,452	+		TX73_014840	0.14	-2.2
3,241,502	-		TX73_014840	0.17	-2.1
3,241,512	+		TX73_014840	0.18	-3.6
3,241,512	-		TX73_014840	0.18	-2.4
3,241,518	+		TX73_014840	0.19	-0.5
3,241,520	-		TX73_014840	0.19	-0.7
3,241,603	-		TX73_014840	0.25	-1.7
3,241,606	+		TX73_014840	0.25	-1.8
3,241,617	+		TX73_014840	0.26	-1.3
3,241,654	+		TX73_014840	0.28	-1.4
3,241,667	+		TX73_014840	0.29	-2.3
3,241,679	-		TX73_014840	0.30	-2.1
3,241,771	-		TX73_014840	0.37	-0.7
3,241,786	-		TX73_014840	0.38	-0.3
3,241,818	+		TX73_014840	0.40	-0.3
3,241,826	-		TX73_014840	0.41	-2.2
3,241,847	-		TX73_014840	0.42	-0.8
3,241,889	+		TX73_014840	0.45	-1.5
3,241,889	+		TX73_014840	0.45	-1.3
3,241,897	-		TX73_014840	0.46	-2.1
3,241,903	+		TX73_014840	0.46	-2.5
3,241,903	+		TX73_014840	0.46	-3.4
3,241,903	+		TX73_014840	0.46	-1.6
3,241,903	+		TX73_014840	0.46	-2.3
3,241,903	+		TX73_014840	0.46	-2.1
3,241,903	+		TX73_014840	0.46	-0.8
3,241,910	+		TX73_014840	0.47	-1.1
3,241,911	-		TX73_014840	0.47	-2.1
3,241,911	-		TX73_014840	0.47	-1.8
3,241,911	-		TX73_014840	0.47	-2.3
3,241,931	-		TX73_014840	0.48	-2.1
3,241,965	+		TX73_014840	0.51	-2.4
3,241,971	-		TX73_014840	0.51	-1.5
3,241,973	+		TX73_014840	0.51	-2.3
3,241,973	-		TX73_014840	0.51	-2.3
3,241,973	-		TX73_014840	0.51	+0.4
3,241,980	+		TX73_014840	0.52	+0.5
3,241,985	+		TX73_014840	0.52	-3.6
3,241,993	-		TX73_014840	0.53	-1.9
3,242,016	+		TX73_014840	0.54	-3.8
3,242,016	+		TX73_014840	0.54	-1.2
3,242,017	-		TX73_014840	0.54	-0.8
3,242,040	+		TX73_014840	0.56	-0.9
3,242,040	+		TX73_014840	0.56	-2.7
3,242,040	+		TX73_014840	0.56	-0.7
3,242,042	+		TX73_014840	0.56	-0.8
3,242,050	-		TX73_014840	0.57	-2.5
3,242,052	+		TX73_014840	0.57	-1.9
3,242,058	+		TX73_014840	0.57	-2.1
3,242,068	+		TX73_014840	0.58	-2.9
3,242,076	-		TX73_014840	0.59	-2.6
3,242,106	+		TX73_014840	0.61	-1.7
3,242,139	+		TX73_014840	0.63	-1.4
3,242,193	+		TX73_014840	0.67	+0.4
3,242,200	-		TX73_014840	0.68	-0.2
3,242,209	-		TX73_014840	0.68	+0.5
3,242,209	-		TX73_014840	0.68	-0.6
3,242,210	-		TX73_014840	0.68	+0.9
3,242,221	+		TX73_014840	0.69	-2.0
3,242,231	+		TX73_014840	0.70	-1.4
3,242,240	+		TX73_014840	0.70	-2.6
3,242,243	-		TX73_014840	0.71	+0.0
3,242,243	-		TX73_014840	0.71	-1.0
3,242,245	-		TX73_014840	0.71	-0.3
3,242,247	+		TX73_014840	0.71	-0.8
3,242,247	+		TX73_014840	0.71	+0.2
3,242,248	-		TX73_014840	0.71	-2.3
3,242,280	+		TX73_014840	0.73	+1.0
3,242,280	+		TX73_014840	0.73	+0.8
3,242,280	+		TX73_014840	0.73	+0.5
3,242,280	+		TX73_014840	0.73	-0.1
3,242,280	+		TX73_014840	0.73	-0.5
3,242,288	-		TX73_014840	0.74	-1.7
3,242,288	-		TX73_014840	0.74	-1.6
3,242,288	-		TX73_014840	0.74	+0.9
3,242,288	-		TX73_014840	0.74	-0.4
3,242,288	-		TX73_014840	0.74	+0.7
3,242,292	-		TX73_014840	0.74	-0.1
3,242,293	-		TX73_014840	0.74	-1.7
3,242,330	+		TX73_014840	0.77	-1.6
3,242,333	-		TX73_014840	0.77	-1.7
3,242,333	-		TX73_014840	0.77	-0.3
3,242,334	-		TX73_014840	0.77	-1.8
3,242,340	+		TX73_014840	0.78	-0.7
3,242,342	+		TX73_014840	0.78	-1.9
3,242,342	+		TX73_014840	0.78	-3.2
3,242,342	+		TX73_014840	0.78	-1.4
3,242,342	+		TX73_014840	0.78	-3.7
3,242,342	+		TX73_014840	0.78	-2.5
3,242,342	+		TX73_014840	0.78	-2.0
3,242,342	+		TX73_014840	0.78	-1.0
3,242,350	-		TX73_014840	0.78	-2.3
3,242,350	-		TX73_014840	0.78	-1.9
3,242,350	-		TX73_014840	0.78	-1.8
3,242,350	-		TX73_014840	0.78	-0.7
3,242,350	-		TX73_014840	0.78	-1.2
3,242,350	-		TX73_014840	0.78	-2.5
3,242,361	-		TX73_014840	0.79	-2.5
3,242,394	+		TX73_014840	0.82	+0.5
3,242,394	+		TX73_014840	0.82	-0.2
3,242,402	-		TX73_014840	0.82	-1.1
3,242,411	-		TX73_014840	0.83	-1.3
3,242,432	+		TX73_014840	0.84	-1.2
3,242,473	-		TX73_014840	0.87	-2.0
3,242,475	+		TX73_014840	0.87	+2.5
3,242,556	+				-0.2
3,242,564	-				-1.9
3,242,564	-				-1.2
3,242,564	-				-2.9
3,242,564	-				-1.2
3,242,605	+				-2.1
3,242,613	+				+1.6
3,242,621	-				-0.8
3,242,653	+				-1.5
3,242,656	-				-0.7
3,242,658	+				+0.2
3,242,660	+				-1.6
3,242,660	+				-1.0
3,242,661	-				+0.8
3,242,668	-				+0.9
3,242,723	-		TX73_014845	0.20	-0.8
3,242,776	-		TX73_014845	0.38	+0.5
3,242,800	-		TX73_014845	0.46	+0.2
3,242,849	+		TX73_014845	0.63	+0.4
3,242,861	+		TX73_014845	0.67	+0.4
3,242,878	+		TX73_014845	0.72	+0.1
3,242,894	+		TX73_014845	0.78	-0.5
3,242,916	-		TX73_014845	0.85	-0.3
3,242,925	-		TX73_014845	0.88	-0.2
3,242,941	+				+0.6
3,242,955	+				-0.7
3,242,955	+				-0.3
3,242,962	-				-0.8
3,242,974	-				+0.9
3,242,989	+				-0.3
3,242,989	+				+0.1
3,242,989	+				+1.1
3,242,989	+				-1.5
3,242,997	-				+0.5
3,243,007	+				-3.2
3,243,007	+				-0.5
3,243,007	+				-1.5
3,243,015	-				-1.1
3,243,025	-				-1.3
3,243,037	+				-1.4
3,243,065	-				-3.4
3,243,120	+		TX73_014850	0.11	-2.3
3,243,147	-		TX73_014850	0.13	-0.8
3,243,157	-		TX73_014850	0.14	-0.2
3,243,209	+		TX73_014850	0.17	-1.2
3,243,212	-		TX73_014850	0.18	-2.7
3,243,214	+		TX73_014850	0.18	-1.1
3,243,229	+		TX73_014850	0.19	-1.1
3,243,259	+		TX73_014850	0.21	-1.8
3,243,267	-		TX73_014850	0.21	-3.5
3,243,316	+		TX73_014850	0.25	-4.3
3,243,325	+		TX73_014850	0.26	-0.9
3,243,328	-		TX73_014850	0.26	-1.0
3,243,333	+		TX73_014850	0.26	-1.1
3,243,359	-		TX73_014850	0.28	-0.9
3,243,371	+		TX73_014850	0.29	-2.4
3,243,466	+		TX73_014850	0.36	-2.0
3,243,466	+		TX73_014850	0.36	-0.2
3,243,466	+		TX73_014850	0.36	-2.5
3,243,466	+		TX73_014850	0.36	-1.4
3,243,474	-		TX73_014850	0.36	-1.3
3,243,474	-		TX73_014850	0.36	-2.9
3,243,474	-		TX73_014850	0.36	-1.2
3,243,474	-		TX73_014850	0.36	-0.9
3,243,476	+		TX73_014850	0.36	-2.2
3,243,493	+		TX73_014850	0.38	-0.5
3,243,518	+		TX73_014850	0.39	-1.2
3,243,518	+		TX73_014850	0.39	-0.6
3,243,519	-		TX73_014850	0.39	-1.8
3,243,520	-		TX73_014850	0.39	-1.4
3,243,525	+		TX73_014850	0.40	+2.2
3,243,528	-		TX73_014850	0.40	-2.8
3,243,528	-		TX73_014850	0.40	-1.8
3,243,553	+		TX73_014850	0.42	-0.8
3,243,561	-		TX73_014850	0.42	-1.4
3,243,561	-		TX73_014850	0.42	-1.6
3,243,561	-		TX73_014850	0.42	-2.6
3,243,600	+		TX73_014850	0.45	-1.4
3,243,603	-		TX73_014850	0.45	-2.7
3,243,631	+		TX73_014850	0.47	-0.7
3,243,639	-		TX73_014850	0.48	-2.0