Experiment: Fumarate (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000995 and TX73_001000 are separated by 145 nucleotides TX73_001000 and TX73_001005 are separated by 82 nucleotides TX73_001005 and TX73_001010 are separated by 205 nucleotides
TX73_000995: TX73_000995 - malate dehydrogenase, at 214,807 to 215,775
_000995
TX73_001000: TX73_001000 - cell division protein ZapE, at 215,921 to 217,105
_001000
TX73_001005: TX73_001005 - RNA 2',3'-cyclic phosphodiesterase, at 217,188 to 217,727
_001005
TX73_001010: TX73_001010 - arylesterase, at 217,933 to 218,547
_001010
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 215.795 kb on - strand at 215.809 kb on - strand at 215.829 kb on - strand at 215.840 kb on - strand at 215.851 kb on - strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.913 kb on + strand at 215.916 kb on - strand at 215.916 kb on - strand at 215.916 kb on - strand at 215.925 kb on + strand at 215.925 kb on + strand at 215.925 kb on + strand at 215.926 kb on - strand at 215.935 kb on + strand at 215.935 kb on + strand at 215.935 kb on + strand at 215.935 kb on + strand at 215.942 kb on + strand at 215.943 kb on - strand at 215.943 kb on - strand at 215.943 kb on - strand at 215.943 kb on - strand at 215.947 kb on + strand at 215.947 kb on + strand at 215.961 kb on + strand at 215.963 kb on + strand at 215.964 kb on - strand at 216.054 kb on - strand, within TX73_001000 at 216.054 kb on - strand, within TX73_001000 at 216.066 kb on + strand, within TX73_001000 at 216.066 kb on + strand, within TX73_001000 at 216.068 kb on + strand, within TX73_001000 at 216.074 kb on - strand, within TX73_001000 at 216.074 kb on - strand, within TX73_001000 at 216.076 kb on - strand, within TX73_001000 at 216.082 kb on + strand, within TX73_001000 at 216.119 kb on + strand, within TX73_001000 at 216.129 kb on + strand, within TX73_001000 at 216.137 kb on - strand, within TX73_001000 at 216.171 kb on + strand, within TX73_001000 at 216.176 kb on + strand, within TX73_001000 at 216.179 kb on - strand, within TX73_001000 at 216.179 kb on - strand, within TX73_001000 at 216.184 kb on - strand, within TX73_001000 at 216.184 kb on - strand, within TX73_001000 at 216.288 kb on + strand, within TX73_001000 at 216.346 kb on + strand, within TX73_001000 at 216.351 kb on + strand, within TX73_001000 at 216.371 kb on - strand, within TX73_001000 at 216.411 kb on - strand, within TX73_001000 at 216.423 kb on + strand, within TX73_001000 at 216.423 kb on + strand, within TX73_001000 at 216.423 kb on + strand, within TX73_001000 at 216.423 kb on + strand, within TX73_001000 at 216.431 kb on - strand, within TX73_001000 at 216.436 kb on - strand, within TX73_001000 at 216.438 kb on - strand, within TX73_001000 at 216.438 kb on - strand, within TX73_001000 at 216.489 kb on + strand, within TX73_001000 at 216.498 kb on + strand, within TX73_001000 at 216.527 kb on - strand, within TX73_001000 at 216.546 kb on + strand, within TX73_001000 at 216.546 kb on + strand, within TX73_001000 at 216.546 kb on + strand, within TX73_001000 at 216.554 kb on - strand, within TX73_001000 at 216.554 kb on - strand, within TX73_001000 at 216.554 kb on - strand, within TX73_001000 at 216.554 kb on - strand, within TX73_001000 at 216.554 kb on - strand, within TX73_001000 at 216.554 kb on - strand, within TX73_001000 at 216.554 kb on - strand, within TX73_001000 at 216.557 kb on - strand, within TX73_001000 at 216.597 kb on - strand, within TX73_001000 at 216.600 kb on + strand, within TX73_001000 at 216.602 kb on + strand, within TX73_001000 at 216.680 kb on - strand, within TX73_001000 at 216.681 kb on + strand, within TX73_001000 at 216.686 kb on + strand, within TX73_001000 at 216.700 kb on - strand, within TX73_001000 at 216.708 kb on + strand, within TX73_001000 at 216.716 kb on - strand, within TX73_001000 at 216.754 kb on - strand, within TX73_001000 at 216.778 kb on + strand, within TX73_001000 at 216.785 kb on + strand, within TX73_001000 at 216.820 kb on + strand, within TX73_001000 at 216.835 kb on + strand, within TX73_001000 at 216.848 kb on + strand, within TX73_001000 at 216.851 kb on - strand, within TX73_001000 at 216.869 kb on - strand, within TX73_001000 at 216.875 kb on - strand, within TX73_001000 at 216.886 kb on + strand, within TX73_001000 at 216.893 kb on + strand, within TX73_001000 at 216.895 kb on + strand, within TX73_001000 at 216.896 kb on + strand, within TX73_001000 at 216.936 kb on - strand, within TX73_001000 at 216.982 kb on - strand, within TX73_001000 at 216.993 kb on + strand at 216.993 kb on + strand at 216.993 kb on + strand at 216.993 kb on + strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.001 kb on - strand at 217.010 kb on + strand at 217.013 kb on - strand at 217.013 kb on - strand at 217.013 kb on - strand at 217.018 kb on + strand at 217.018 kb on - strand at 217.018 kb on - strand at 217.018 kb on - strand at 217.018 kb on - strand at 217.018 kb on - strand at 217.018 kb on - strand at 217.020 kb on + strand at 217.020 kb on + strand at 217.020 kb on + strand at 217.020 kb on + strand at 217.028 kb on - strand at 217.051 kb on + strand at 217.081 kb on + strand at 217.101 kb on - strand at 217.117 kb on - strand at 217.181 kb on + strand at 217.216 kb on + strand at 217.227 kb on - strand at 217.245 kb on - strand, within TX73_001005 at 217.249 kb on + strand, within TX73_001005 at 217.249 kb on + strand, within TX73_001005 at 217.263 kb on + strand, within TX73_001005 at 217.268 kb on + strand, within TX73_001005 at 217.273 kb on + strand, within TX73_001005 at 217.273 kb on + strand, within TX73_001005 at 217.273 kb on + strand, within TX73_001005 at 217.273 kb on + strand, within TX73_001005 at 217.273 kb on + strand, within TX73_001005 at 217.273 kb on + strand, within TX73_001005 at 217.273 kb on + strand, within TX73_001005 at 217.281 kb on - strand, within TX73_001005 at 217.281 kb on - strand, within TX73_001005 at 217.281 kb on - strand, within TX73_001005 at 217.281 kb on - strand, within TX73_001005 at 217.281 kb on - strand, within TX73_001005 at 217.281 kb on - strand, within TX73_001005 at 217.281 kb on - strand, within TX73_001005 at 217.283 kb on + strand, within TX73_001005 at 217.283 kb on + strand, within TX73_001005 at 217.332 kb on + strand, within TX73_001005 at 217.355 kb on + strand, within TX73_001005 at 217.355 kb on + strand, within TX73_001005 at 217.363 kb on - strand, within TX73_001005 at 217.363 kb on - strand, within TX73_001005 at 217.363 kb on - strand, within TX73_001005 at 217.368 kb on - strand, within TX73_001005 at 217.368 kb on - strand, within TX73_001005 at 217.371 kb on - strand, within TX73_001005 at 217.373 kb on + strand, within TX73_001005 at 217.388 kb on + strand, within TX73_001005 at 217.388 kb on + strand, within TX73_001005 at 217.388 kb on + strand, within TX73_001005 at 217.393 kb on + strand, within TX73_001005 at 217.396 kb on - strand, within TX73_001005 at 217.396 kb on - strand, within TX73_001005 at 217.396 kb on - strand, within TX73_001005 at 217.399 kb on + strand, within TX73_001005 at 217.420 kb on - strand, within TX73_001005 at 217.432 kb on + strand, within TX73_001005 at 217.434 kb on - strand, within TX73_001005 at 217.459 kb on - strand, within TX73_001005 at 217.463 kb on + strand, within TX73_001005 at 217.478 kb on - strand, within TX73_001005 at 217.510 kb on - strand, within TX73_001005 at 217.512 kb on + strand, within TX73_001005 at 217.512 kb on + strand, within TX73_001005 at 217.514 kb on - strand, within TX73_001005 at 217.515 kb on + strand, within TX73_001005 at 217.520 kb on + strand, within TX73_001005 at 217.520 kb on - strand, within TX73_001005 at 217.520 kb on - strand, within TX73_001005 at 217.523 kb on - strand, within TX73_001005 at 217.528 kb on - strand, within TX73_001005 at 217.543 kb on - strand, within TX73_001005 at 217.543 kb on - strand, within TX73_001005 at 217.556 kb on + strand, within TX73_001005 at 217.564 kb on - strand, within TX73_001005 at 217.571 kb on + strand, within TX73_001005 at 217.574 kb on - strand, within TX73_001005 at 217.579 kb on - strand, within TX73_001005 at 217.585 kb on + strand, within TX73_001005 at 217.612 kb on - strand, within TX73_001005 at 217.624 kb on - strand, within TX73_001005 at 217.631 kb on + strand, within TX73_001005 at 217.631 kb on + strand, within TX73_001005 at 217.631 kb on + strand, within TX73_001005 at 217.631 kb on + strand, within TX73_001005 at 217.644 kb on - strand, within TX73_001005 at 217.677 kb on + strand at 217.681 kb on + strand at 217.684 kb on - strand at 217.684 kb on - strand at 217.685 kb on - strand at 217.685 kb on - strand at 217.694 kb on - strand at 217.701 kb on + strand at 217.707 kb on - strand at 217.709 kb on - strand at 217.728 kb on + strand at 217.735 kb on + strand at 217.743 kb on - strand at 217.743 kb on - strand at 217.744 kb on - strand at 217.751 kb on - strand at 217.760 kb on + strand at 217.770 kb on - strand at 217.775 kb on - strand at 217.791 kb on - strand at 217.793 kb on + strand at 217.801 kb on - strand at 217.801 kb on - strand at 217.801 kb on - strand at 217.801 kb on - strand at 217.801 kb on - strand at 217.813 kb on - strand at 217.851 kb on + strand at 217.859 kb on + strand at 217.859 kb on - strand at 217.862 kb on + strand at 217.864 kb on + strand at 217.864 kb on + strand at 217.864 kb on + strand at 217.866 kb on + strand at 217.867 kb on + strand at 217.867 kb on - strand at 217.870 kb on - strand at 217.872 kb on - strand at 217.910 kb on - strand at 217.951 kb on - strand at 217.968 kb on - strand at 217.994 kb on + strand at 218.022 kb on + strand, within TX73_001010 at 218.022 kb on + strand, within TX73_001010 at 218.022 kb on + strand, within TX73_001010 at 218.048 kb on - strand, within TX73_001010 at 218.058 kb on + strand, within TX73_001010 at 218.089 kb on - strand, within TX73_001010 at 218.093 kb on + strand, within TX73_001010
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C); anaerobic remove 215,795 - +0.6 215,809 - -0.6 215,829 - +1.4 215,840 - -0.2 215,851 - +0.3 215,908 + -0.5 215,908 + +0.7 215,913 + +0.2 215,916 - -1.9 215,916 - +0.7 215,916 - +0.2 215,925 + +0.6 215,925 + +1.0 215,925 + +0.5 215,926 - +0.1 215,935 + +0.2 215,935 + +0.0 215,935 + +0.6 215,935 + +0.9 215,942 + +0.4 215,943 - -0.7 215,943 - +0.1 215,943 - -0.7 215,943 - -1.1 215,947 + +0.5 215,947 + +0.6 215,961 + +1.2 215,963 + +0.4 215,964 - -0.7 216,054 - TX73_001000 0.11 +0.8 216,054 - TX73_001000 0.11 +0.6 216,066 + TX73_001000 0.12 +0.5 216,066 + TX73_001000 0.12 +0.7 216,068 + TX73_001000 0.12 +1.8 216,074 - TX73_001000 0.13 +1.1 216,074 - TX73_001000 0.13 -0.1 216,076 - TX73_001000 0.13 +0.3 216,082 + TX73_001000 0.14 +0.9 216,119 + TX73_001000 0.17 -0.0 216,129 + TX73_001000 0.18 +1.2 216,137 - TX73_001000 0.18 +1.1 216,171 + TX73_001000 0.21 +1.5 216,176 + TX73_001000 0.22 +1.0 216,179 - TX73_001000 0.22 +0.9 216,179 - TX73_001000 0.22 +1.4 216,184 - TX73_001000 0.22 +0.7 216,184 - TX73_001000 0.22 +0.4 216,288 + TX73_001000 0.31 +1.1 216,346 + TX73_001000 0.36 +0.6 216,351 + TX73_001000 0.36 +1.1 216,371 - TX73_001000 0.38 +1.9 216,411 - TX73_001000 0.41 +0.5 216,423 + TX73_001000 0.42 -0.0 216,423 + TX73_001000 0.42 -0.0 216,423 + TX73_001000 0.42 -0.6 216,423 + TX73_001000 0.42 +0.8 216,431 - TX73_001000 0.43 +0.7 216,436 - TX73_001000 0.43 +0.9 216,438 - TX73_001000 0.44 +4.2 216,438 - TX73_001000 0.44 +1.5 216,489 + TX73_001000 0.48 +1.1 216,498 + TX73_001000 0.49 +2.5 216,527 - TX73_001000 0.51 +0.3 216,546 + TX73_001000 0.53 +1.2 216,546 + TX73_001000 0.53 +0.0 216,546 + TX73_001000 0.53 +1.6 216,554 - TX73_001000 0.53 +0.7 216,554 - TX73_001000 0.53 +0.1 216,554 - TX73_001000 0.53 +0.4 216,554 - TX73_001000 0.53 +1.7 216,554 - TX73_001000 0.53 +1.3 216,554 - TX73_001000 0.53 +1.3 216,554 - TX73_001000 0.53 +0.3 216,557 - TX73_001000 0.54 +1.5 216,597 - TX73_001000 0.57 +1.0 216,600 + TX73_001000 0.57 +0.5 216,602 + TX73_001000 0.57 +1.1 216,680 - TX73_001000 0.64 +1.0 216,681 + TX73_001000 0.64 +1.4 216,686 + TX73_001000 0.65 +1.1 216,700 - TX73_001000 0.66 +1.3 216,708 + TX73_001000 0.66 +0.5 216,716 - TX73_001000 0.67 +1.0 216,754 - TX73_001000 0.70 +0.4 216,778 + TX73_001000 0.72 +0.7 216,785 + TX73_001000 0.73 +0.0 216,820 + TX73_001000 0.76 +0.9 216,835 + TX73_001000 0.77 +1.1 216,848 + TX73_001000 0.78 +0.6 216,851 - TX73_001000 0.78 +0.2 216,869 - TX73_001000 0.80 +0.9 216,875 - TX73_001000 0.81 +2.0 216,886 + TX73_001000 0.81 +1.1 216,893 + TX73_001000 0.82 +0.7 216,895 + TX73_001000 0.82 +1.0 216,896 + TX73_001000 0.82 -0.2 216,936 - TX73_001000 0.86 +1.0 216,982 - TX73_001000 0.90 +1.5 216,993 + +0.9 216,993 + +0.9 216,993 + +0.2 216,993 + +0.7 217,001 - +0.6 217,001 - -0.0 217,001 - +1.4 217,010 + +1.7 217,013 - +1.1 217,013 - +0.9 217,013 - +1.1 217,018 + +1.1 217,018 - +0.5 217,018 - +1.5 217,018 - +1.6 217,018 - +0.2 217,018 - +0.4 217,018 - +0.8 217,020 + +1.7 217,020 + +0.6 217,020 + -0.5 217,020 + -0.1 217,028 - +1.0 217,051 + +1.3 217,081 + +0.8 217,101 - -0.5 217,117 - -0.8 217,181 + +0.2 217,216 + -0.2 217,227 - -0.3 217,245 - TX73_001005 0.11 +0.4 217,249 + TX73_001005 0.11 +0.1 217,249 + TX73_001005 0.11 -1.0 217,263 + TX73_001005 0.14 -0.2 217,268 + TX73_001005 0.15 +0.9 217,273 + TX73_001005 0.16 +0.5 217,273 + TX73_001005 0.16 -0.4 217,273 + TX73_001005 0.16 -0.7 217,273 + TX73_001005 0.16 +0.1 217,273 + TX73_001005 0.16 -0.3 217,273 + TX73_001005 0.16 -0.1 217,273 + TX73_001005 0.16 -1.7 217,281 - TX73_001005 0.17 +0.1 217,281 - TX73_001005 0.17 -0.2 217,281 - TX73_001005 0.17 -1.3 217,281 - TX73_001005 0.17 +0.6 217,281 - TX73_001005 0.17 -0.3 217,281 - TX73_001005 0.17 -1.3 217,281 - TX73_001005 0.17 -0.3 217,283 + TX73_001005 0.18 +0.2 217,283 + TX73_001005 0.18 +0.6 217,332 + TX73_001005 0.27 +0.9 217,355 + TX73_001005 0.31 +0.1 217,355 + TX73_001005 0.31 -2.0 217,363 - TX73_001005 0.32 -0.8 217,363 - TX73_001005 0.32 -1.1 217,363 - TX73_001005 0.32 -0.7 217,368 - TX73_001005 0.33 -0.8 217,368 - TX73_001005 0.33 -1.1 217,371 - TX73_001005 0.34 +0.0 217,373 + TX73_001005 0.34 -0.1 217,388 + TX73_001005 0.37 -0.0 217,388 + TX73_001005 0.37 -2.2 217,388 + TX73_001005 0.37 -0.2 217,393 + TX73_001005 0.38 +0.5 217,396 - TX73_001005 0.39 +0.5 217,396 - TX73_001005 0.39 +0.6 217,396 - TX73_001005 0.39 -0.5 217,399 + TX73_001005 0.39 -0.6 217,420 - TX73_001005 0.43 -1.0 217,432 + TX73_001005 0.45 +0.5 217,434 - TX73_001005 0.46 -0.7 217,459 - TX73_001005 0.50 +0.2 217,463 + TX73_001005 0.51 -0.2 217,478 - TX73_001005 0.54 -1.1 217,510 - TX73_001005 0.60 +0.1 217,512 + TX73_001005 0.60 -0.4 217,512 + TX73_001005 0.60 -0.0 217,514 - TX73_001005 0.60 -0.6 217,515 + TX73_001005 0.61 +0.3 217,520 + TX73_001005 0.61 +0.4 217,520 - TX73_001005 0.61 -1.1 217,520 - TX73_001005 0.61 -1.1 217,523 - TX73_001005 0.62 +0.6 217,528 - TX73_001005 0.63 -0.3 217,543 - TX73_001005 0.66 +0.7 217,543 - TX73_001005 0.66 +0.2 217,556 + TX73_001005 0.68 +0.7 217,564 - TX73_001005 0.70 +0.2 217,571 + TX73_001005 0.71 -0.9 217,574 - TX73_001005 0.71 -0.4 217,579 - TX73_001005 0.72 -1.2 217,585 + TX73_001005 0.74 -1.3 217,612 - TX73_001005 0.79 +0.3 217,624 - TX73_001005 0.81 -0.1 217,631 + TX73_001005 0.82 -0.7 217,631 + TX73_001005 0.82 -0.3 217,631 + TX73_001005 0.82 +0.1 217,631 + TX73_001005 0.82 +0.0 217,644 - TX73_001005 0.84 +0.6 217,677 + -1.0 217,681 + +0.9 217,684 - +0.1 217,684 - +0.4 217,685 - -0.5 217,685 - -0.6 217,694 - +0.2 217,701 + -0.6 217,707 - +0.2 217,709 - -0.4 217,728 + +0.8 217,735 + +0.4 217,743 - +0.7 217,743 - -0.1 217,744 - -0.3 217,751 - +1.0 217,760 + +0.0 217,770 - -0.1 217,775 - -0.1 217,791 - +0.5 217,793 + +0.6 217,801 - -0.9 217,801 - -0.9 217,801 - +0.3 217,801 - +0.0 217,801 - +0.2 217,813 - -0.7 217,851 + -1.1 217,859 + +0.3 217,859 - +0.7 217,862 + -1.3 217,864 + +0.6 217,864 + -0.1 217,864 + +0.3 217,866 + -0.2 217,867 + +0.4 217,867 - +0.2 217,870 - +0.4 217,872 - +0.3 217,910 - +0.4 217,951 - +0.5 217,968 - -0.3 217,994 + +0.8 218,022 + TX73_001010 0.14 +0.0 218,022 + TX73_001010 0.14 +0.9 218,022 + TX73_001010 0.14 -0.4 218,048 - TX73_001010 0.19 +0.6 218,058 + TX73_001010 0.20 +2.6 218,089 - TX73_001010 0.25 -1.0 218,093 + TX73_001010 0.26 -0.6
Or see this region's nucleotide sequence