Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002845

Experiment: Fumarate (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002840 and TX73_002845 overlap by 4 nucleotidesTX73_002845 and TX73_002850 overlap by 4 nucleotides TX73_002840: TX73_002840 - AI-2E family transporter, at 610,258 to 611,418 _002840 TX73_002845: TX73_002845 - ChrR family anti-sigma-E factor, at 611,415 to 612,077 _002845 TX73_002850: TX73_002850 - sigma-70 family RNA polymerase sigma factor, at 612,074 to 612,661 _002850 Position (kb) 611 612 613Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 610.435 kb on + strand, within TX73_002840at 610.443 kb on - strand, within TX73_002840at 610.493 kb on + strand, within TX73_002840at 610.493 kb on + strand, within TX73_002840at 610.493 kb on + strand, within TX73_002840at 610.501 kb on - strand, within TX73_002840at 610.501 kb on - strand, within TX73_002840at 610.541 kb on - strand, within TX73_002840at 610.555 kb on - strand, within TX73_002840at 610.611 kb on + strand, within TX73_002840at 610.664 kb on - strand, within TX73_002840at 610.669 kb on + strand, within TX73_002840at 610.669 kb on - strand, within TX73_002840at 610.806 kb on + strand, within TX73_002840at 610.829 kb on + strand, within TX73_002840at 610.882 kb on + strand, within TX73_002840at 610.907 kb on + strand, within TX73_002840at 610.911 kb on + strand, within TX73_002840at 610.963 kb on + strand, within TX73_002840at 610.978 kb on + strand, within TX73_002840at 611.065 kb on - strand, within TX73_002840at 611.068 kb on + strand, within TX73_002840at 611.162 kb on - strand, within TX73_002840at 611.296 kb on + strand, within TX73_002840at 611.314 kb on - strandat 611.321 kb on + strandat 611.351 kb on - strandat 611.366 kb on - strandat 611.430 kb on + strandat 611.438 kb on - strandat 611.438 kb on - strandat 611.439 kb on + strandat 611.562 kb on - strand, within TX73_002845at 611.603 kb on + strand, within TX73_002845at 611.609 kb on + strand, within TX73_002845at 611.642 kb on - strand, within TX73_002845at 611.714 kb on + strand, within TX73_002845at 611.720 kb on - strand, within TX73_002845at 611.726 kb on + strand, within TX73_002845at 611.737 kb on + strand, within TX73_002845at 611.737 kb on + strand, within TX73_002845at 611.740 kb on - strand, within TX73_002845at 611.745 kb on - strand, within TX73_002845at 611.745 kb on - strand, within TX73_002845at 611.745 kb on - strand, within TX73_002845at 611.750 kb on - strand, within TX73_002845at 611.806 kb on + strand, within TX73_002845at 611.842 kb on + strand, within TX73_002845at 611.842 kb on + strand, within TX73_002845at 611.842 kb on + strand, within TX73_002845at 611.848 kb on + strand, within TX73_002845at 611.861 kb on - strand, within TX73_002845at 611.974 kb on - strand, within TX73_002845at 611.986 kb on - strand, within TX73_002845at 612.010 kb on - strand, within TX73_002845at 612.011 kb on - strandat 612.014 kb on + strandat 612.022 kb on - strandat 612.090 kb on - strandat 612.095 kb on + strandat 612.170 kb on + strand, within TX73_002850at 612.258 kb on - strand, within TX73_002850at 612.276 kb on + strand, within TX73_002850at 612.279 kb on - strand, within TX73_002850at 612.333 kb on + strand, within TX73_002850at 612.397 kb on + strand, within TX73_002850at 612.407 kb on + strand, within TX73_002850at 612.415 kb on - strand, within TX73_002850at 612.415 kb on - strand, within TX73_002850at 612.419 kb on + strand, within TX73_002850at 612.426 kb on + strand, within TX73_002850at 612.434 kb on - strand, within TX73_002850at 612.434 kb on - strand, within TX73_002850at 612.435 kb on + strand, within TX73_002850at 612.435 kb on + strand, within TX73_002850at 612.443 kb on - strand, within TX73_002850at 612.510 kb on + strand, within TX73_002850at 612.518 kb on - strand, within TX73_002850at 612.566 kb on + strand, within TX73_002850at 612.566 kb on + strand, within TX73_002850at 612.576 kb on + strand, within TX73_002850at 612.633 kb on - strandat 612.642 kb on - strandat 612.642 kb on - strandat 612.681 kb on + strandat 612.690 kb on - strandat 612.726 kb on - strandat 612.733 kb on + strandat 612.733 kb on + strandat 612.733 kb on + strandat 612.733 kb on + strandat 612.733 kb on + strandat 612.733 kb on + strandat 612.741 kb on - strandat 612.848 kb on - strandat 612.892 kb on - strandat 612.938 kb on + strandat 612.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C); anaerobic
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610,435 + TX73_002840 0.15 -0.2
610,443 - TX73_002840 0.16 -0.2
610,493 + TX73_002840 0.20 +0.3
610,493 + TX73_002840 0.20 +0.0
610,493 + TX73_002840 0.20 -0.1
610,501 - TX73_002840 0.21 -1.0
610,501 - TX73_002840 0.21 -1.5
610,541 - TX73_002840 0.24 -0.4
610,555 - TX73_002840 0.26 -0.2
610,611 + TX73_002840 0.30 +0.0
610,664 - TX73_002840 0.35 +0.2
610,669 + TX73_002840 0.35 +0.5
610,669 - TX73_002840 0.35 -0.8
610,806 + TX73_002840 0.47 -0.2
610,829 + TX73_002840 0.49 -1.0
610,882 + TX73_002840 0.54 -0.7
610,907 + TX73_002840 0.56 -1.3
610,911 + TX73_002840 0.56 +0.3
610,963 + TX73_002840 0.61 +0.7
610,978 + TX73_002840 0.62 -0.1
611,065 - TX73_002840 0.70 +0.5
611,068 + TX73_002840 0.70 +0.1
611,162 - TX73_002840 0.78 -0.8
611,296 + TX73_002840 0.89 +0.0
611,314 - -0.6
611,321 + +0.6
611,351 - -1.1
611,366 - -0.4
611,430 + -1.3
611,438 - +0.4
611,438 - -0.1
611,439 + -1.4
611,562 - TX73_002845 0.22 +0.1
611,603 + TX73_002845 0.28 -0.5
611,609 + TX73_002845 0.29 +0.7
611,642 - TX73_002845 0.34 +1.8
611,714 + TX73_002845 0.45 +0.3
611,720 - TX73_002845 0.46 +0.8
611,726 + TX73_002845 0.47 +0.1
611,737 + TX73_002845 0.49 +0.0
611,737 + TX73_002845 0.49 -1.3
611,740 - TX73_002845 0.49 +0.7
611,745 - TX73_002845 0.50 +0.2
611,745 - TX73_002845 0.50 -1.0
611,745 - TX73_002845 0.50 -1.0
611,750 - TX73_002845 0.51 -1.1
611,806 + TX73_002845 0.59 +0.5
611,842 + TX73_002845 0.64 -0.1
611,842 + TX73_002845 0.64 +1.2
611,842 + TX73_002845 0.64 -0.5
611,848 + TX73_002845 0.65 +0.9
611,861 - TX73_002845 0.67 +1.1
611,974 - TX73_002845 0.84 +0.9
611,986 - TX73_002845 0.86 +0.3
612,010 - TX73_002845 0.90 +0.5
612,011 - -0.0
612,014 + -0.3
612,022 - +0.2
612,090 - -1.1
612,095 + -0.2
612,170 + TX73_002850 0.16 +0.1
612,258 - TX73_002850 0.31 -1.0
612,276 + TX73_002850 0.34 -0.8
612,279 - TX73_002850 0.35 -3.0
612,333 + TX73_002850 0.44 +0.6
612,397 + TX73_002850 0.55 -2.0
612,407 + TX73_002850 0.57 -0.6
612,415 - TX73_002850 0.58 +0.2
612,415 - TX73_002850 0.58 -0.6
612,419 + TX73_002850 0.59 -0.2
612,426 + TX73_002850 0.60 -0.8
612,434 - TX73_002850 0.61 -0.2
612,434 - TX73_002850 0.61 +0.7
612,435 + TX73_002850 0.61 -0.4
612,435 + TX73_002850 0.61 -0.4
612,443 - TX73_002850 0.63 +0.1
612,510 + TX73_002850 0.74 +0.4
612,518 - TX73_002850 0.76 -1.0
612,566 + TX73_002850 0.84 -0.3
612,566 + TX73_002850 0.84 +0.1
612,576 + TX73_002850 0.85 +0.1
612,633 - +0.5
612,642 - -0.5
612,642 - +0.2
612,681 + -0.2
612,690 - -0.9
612,726 - -0.3
612,733 + -2.2
612,733 + +0.9
612,733 + -0.2
612,733 + +0.2
612,733 + -0.4
612,733 + +0.1
612,741 - -0.9
612,848 - -1.6
612,892 - +0.8
612,938 + -1.5
612,949 + -2.0

Or see this region's nucleotide sequence