Experiment: Citraconic (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024720 and TX73_024725 are separated by 415 nucleotides TX73_024725 and TX73_024730 are separated by 46 nucleotides TX73_024730 and TX73_024735 are separated by 112 nucleotides TX73_024735 and TX73_024740 are separated by 185 nucleotides
TX73_024720: TX73_024720 - TonB-dependent receptor, at 5,367,827 to 5,369,997
_024720
TX73_024725: TX73_024725 - PRC-barrel domain-containing protein, at 5,370,413 to 5,370,766
_024725
TX73_024730: TX73_024730 - alpha-amylase family glycosyl hydrolase, at 5,370,813 to 5,372,429
_024730
TX73_024735: TX73_024735 - hypothetical protein, at 5,372,542 to 5,372,757
_024735
TX73_024740: TX73_024740 - hypothetical protein, at 5,372,943 to 5,373,476
_024740
Position (kb) 5370
5371
5372
5373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5369.837 kb on - strand at 5369.898 kb on + strand at 5369.938 kb on - strand at 5369.938 kb on - strand at 5369.982 kb on + strand at 5369.990 kb on - strand at 5369.999 kb on - strand at 5370.018 kb on - strand at 5370.065 kb on + strand at 5370.089 kb on + strand at 5370.147 kb on + strand at 5370.203 kb on - strand at 5370.213 kb on - strand at 5370.249 kb on + strand at 5370.272 kb on + strand at 5370.274 kb on + strand at 5370.286 kb on + strand at 5370.352 kb on + strand at 5370.354 kb on + strand at 5370.381 kb on + strand at 5370.435 kb on + strand at 5370.461 kb on + strand, within TX73_024725 at 5370.468 kb on + strand, within TX73_024725 at 5370.469 kb on - strand, within TX73_024725 at 5370.469 kb on - strand, within TX73_024725 at 5370.555 kb on - strand, within TX73_024725 at 5370.565 kb on - strand, within TX73_024725 at 5370.565 kb on - strand, within TX73_024725 at 5370.565 kb on - strand, within TX73_024725 at 5370.615 kb on - strand, within TX73_024725 at 5370.652 kb on + strand, within TX73_024725 at 5370.671 kb on - strand, within TX73_024725 at 5370.671 kb on - strand, within TX73_024725 at 5370.673 kb on + strand, within TX73_024725 at 5370.712 kb on + strand, within TX73_024725 at 5370.712 kb on + strand, within TX73_024725 at 5370.750 kb on - strand at 5370.763 kb on - strand at 5370.763 kb on - strand at 5370.818 kb on - strand at 5370.818 kb on - strand at 5370.864 kb on + strand at 5370.874 kb on - strand at 5370.874 kb on - strand at 5370.874 kb on - strand at 5370.880 kb on - strand at 5370.910 kb on + strand at 5370.971 kb on + strand at 5370.973 kb on - strand at 5370.984 kb on - strand, within TX73_024730 at 5371.001 kb on + strand, within TX73_024730 at 5371.007 kb on + strand, within TX73_024730 at 5371.030 kb on + strand, within TX73_024730 at 5371.030 kb on + strand, within TX73_024730 at 5371.031 kb on - strand, within TX73_024730 at 5371.038 kb on - strand, within TX73_024730 at 5371.063 kb on - strand, within TX73_024730 at 5371.072 kb on + strand, within TX73_024730 at 5371.080 kb on - strand, within TX73_024730 at 5371.116 kb on + strand, within TX73_024730 at 5371.116 kb on - strand, within TX73_024730 at 5371.122 kb on - strand, within TX73_024730 at 5371.124 kb on - strand, within TX73_024730 at 5371.153 kb on + strand, within TX73_024730 at 5371.153 kb on + strand, within TX73_024730 at 5371.161 kb on - strand, within TX73_024730 at 5371.166 kb on - strand, within TX73_024730 at 5371.166 kb on - strand, within TX73_024730 at 5371.225 kb on - strand, within TX73_024730 at 5371.228 kb on + strand, within TX73_024730 at 5371.328 kb on + strand, within TX73_024730 at 5371.336 kb on - strand, within TX73_024730 at 5371.336 kb on - strand, within TX73_024730 at 5371.348 kb on + strand, within TX73_024730 at 5371.356 kb on - strand, within TX73_024730 at 5371.366 kb on + strand, within TX73_024730 at 5371.404 kb on + strand, within TX73_024730 at 5371.404 kb on + strand, within TX73_024730 at 5371.409 kb on + strand, within TX73_024730 at 5371.417 kb on - strand, within TX73_024730 at 5371.417 kb on - strand, within TX73_024730 at 5371.422 kb on - strand, within TX73_024730 at 5371.511 kb on + strand, within TX73_024730 at 5371.514 kb on + strand, within TX73_024730 at 5371.568 kb on + strand, within TX73_024730 at 5371.576 kb on + strand, within TX73_024730 at 5371.578 kb on + strand, within TX73_024730 at 5371.583 kb on + strand, within TX73_024730 at 5371.584 kb on - strand, within TX73_024730 at 5371.584 kb on - strand, within TX73_024730 at 5371.586 kb on - strand, within TX73_024730 at 5371.705 kb on - strand, within TX73_024730 at 5371.705 kb on - strand, within TX73_024730 at 5371.755 kb on - strand, within TX73_024730 at 5371.768 kb on - strand, within TX73_024730 at 5371.795 kb on + strand, within TX73_024730 at 5371.841 kb on - strand, within TX73_024730 at 5371.879 kb on + strand, within TX73_024730 at 5371.886 kb on + strand, within TX73_024730 at 5371.902 kb on + strand, within TX73_024730 at 5371.936 kb on + strand, within TX73_024730 at 5371.936 kb on + strand, within TX73_024730 at 5371.936 kb on + strand, within TX73_024730 at 5371.944 kb on - strand, within TX73_024730 at 5371.959 kb on + strand, within TX73_024730 at 5372.021 kb on + strand, within TX73_024730 at 5372.029 kb on - strand, within TX73_024730 at 5372.029 kb on - strand, within TX73_024730 at 5372.040 kb on - strand, within TX73_024730 at 5372.084 kb on - strand, within TX73_024730 at 5372.104 kb on + strand, within TX73_024730 at 5372.104 kb on + strand, within TX73_024730 at 5372.128 kb on + strand, within TX73_024730 at 5372.128 kb on + strand, within TX73_024730 at 5372.135 kb on + strand, within TX73_024730 at 5372.135 kb on + strand, within TX73_024730 at 5372.135 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.148 kb on + strand, within TX73_024730 at 5372.156 kb on - strand, within TX73_024730 at 5372.204 kb on - strand, within TX73_024730 at 5372.259 kb on + strand, within TX73_024730 at 5372.355 kb on + strand at 5372.363 kb on - strand at 5372.365 kb on - strand at 5372.382 kb on + strand at 5372.382 kb on + strand at 5372.385 kb on - strand at 5372.388 kb on - strand at 5372.393 kb on - strand at 5372.414 kb on - strand at 5372.441 kb on - strand at 5372.441 kb on - strand at 5372.444 kb on + strand at 5372.446 kb on - strand at 5372.464 kb on + strand at 5372.467 kb on - strand at 5372.471 kb on + strand at 5372.471 kb on + strand at 5372.471 kb on + strand at 5372.479 kb on - strand at 5372.479 kb on - strand at 5372.479 kb on - strand at 5372.484 kb on - strand at 5372.492 kb on + strand at 5372.516 kb on + strand at 5372.516 kb on + strand at 5372.516 kb on + strand at 5372.522 kb on + strand at 5372.524 kb on - strand at 5372.532 kb on - strand at 5372.572 kb on + strand, within TX73_024735 at 5372.580 kb on - strand, within TX73_024735 at 5372.591 kb on + strand, within TX73_024735 at 5372.597 kb on + strand, within TX73_024735 at 5372.602 kb on + strand, within TX73_024735 at 5372.605 kb on - strand, within TX73_024735 at 5372.609 kb on + strand, within TX73_024735 at 5372.624 kb on + strand, within TX73_024735 at 5372.632 kb on - strand, within TX73_024735 at 5372.686 kb on + strand, within TX73_024735 at 5372.695 kb on - strand, within TX73_024735 at 5372.714 kb on + strand, within TX73_024735 at 5372.714 kb on + strand, within TX73_024735 at 5372.722 kb on - strand, within TX73_024735 at 5372.722 kb on - strand, within TX73_024735 at 5372.741 kb on + strand at 5372.764 kb on + strand at 5372.818 kb on + strand at 5372.824 kb on - strand at 5372.860 kb on + strand at 5372.925 kb on + strand at 5372.933 kb on - strand at 5372.973 kb on - strand at 5373.002 kb on + strand, within TX73_024740 at 5373.010 kb on - strand, within TX73_024740 at 5373.010 kb on - strand, within TX73_024740 at 5373.022 kb on + strand, within TX73_024740 at 5373.023 kb on - strand, within TX73_024740 at 5373.025 kb on - strand, within TX73_024740 at 5373.033 kb on + strand, within TX73_024740 at 5373.052 kb on + strand, within TX73_024740 at 5373.062 kb on + strand, within TX73_024740 at 5373.062 kb on + strand, within TX73_024740 at 5373.065 kb on - strand, within TX73_024740 at 5373.091 kb on - strand, within TX73_024740 at 5373.093 kb on + strand, within TX73_024740 at 5373.093 kb on + strand, within TX73_024740 at 5373.093 kb on + strand, within TX73_024740 at 5373.096 kb on - strand, within TX73_024740 at 5373.097 kb on - strand, within TX73_024740 at 5373.101 kb on - strand, within TX73_024740 at 5373.186 kb on + strand, within TX73_024740 at 5373.186 kb on + strand, within TX73_024740 at 5373.225 kb on + strand, within TX73_024740 at 5373.225 kb on + strand, within TX73_024740 at 5373.233 kb on - strand, within TX73_024740 at 5373.233 kb on - strand, within TX73_024740 at 5373.241 kb on + strand, within TX73_024740 at 5373.246 kb on + strand, within TX73_024740 at 5373.256 kb on + strand, within TX73_024740 at 5373.259 kb on - strand, within TX73_024740 at 5373.281 kb on + strand, within TX73_024740 at 5373.301 kb on - strand, within TX73_024740 at 5373.301 kb on - strand, within TX73_024740 at 5373.310 kb on + strand, within TX73_024740 at 5373.333 kb on + strand, within TX73_024740 at 5373.342 kb on - strand, within TX73_024740 at 5373.356 kb on + strand, within TX73_024740 at 5373.401 kb on - strand, within TX73_024740 at 5373.403 kb on + strand, within TX73_024740 at 5373.406 kb on + strand, within TX73_024740 at 5373.414 kb on - strand, within TX73_024740 at 5373.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citraconic (C); anaerobic remove 5,369,837 - -0.9 5,369,898 + -0.1 5,369,938 - -0.9 5,369,938 - +0.4 5,369,982 + +0.4 5,369,990 - +0.5 5,369,999 - -0.1 5,370,018 - -0.4 5,370,065 + +1.1 5,370,089 + -0.5 5,370,147 + +0.3 5,370,203 - +0.6 5,370,213 - -0.2 5,370,249 + +1.0 5,370,272 + +3.0 5,370,274 + -0.2 5,370,286 + +0.0 5,370,352 + -1.0 5,370,354 + -1.0 5,370,381 + -0.6 5,370,435 + -0.6 5,370,461 + TX73_024725 0.14 -0.3 5,370,468 + TX73_024725 0.16 +0.4 5,370,469 - TX73_024725 0.16 -0.1 5,370,469 - TX73_024725 0.16 -0.3 5,370,555 - TX73_024725 0.40 -2.0 5,370,565 - TX73_024725 0.43 -0.3 5,370,565 - TX73_024725 0.43 +0.2 5,370,565 - TX73_024725 0.43 +0.8 5,370,615 - TX73_024725 0.57 +0.3 5,370,652 + TX73_024725 0.68 +1.1 5,370,671 - TX73_024725 0.73 +1.4 5,370,671 - TX73_024725 0.73 +0.0 5,370,673 + TX73_024725 0.73 +0.4 5,370,712 + TX73_024725 0.84 -0.6 5,370,712 + TX73_024725 0.84 +0.4 5,370,750 - -0.3 5,370,763 - -1.2 5,370,763 - +0.7 5,370,818 - -1.1 5,370,818 - +1.0 5,370,864 + -0.1 5,370,874 - +0.5 5,370,874 - -0.5 5,370,874 - +0.6 5,370,880 - +0.6 5,370,910 + -0.3 5,370,971 + +0.2 5,370,973 - +0.4 5,370,984 - TX73_024730 0.11 +0.2 5,371,001 + TX73_024730 0.12 +0.7 5,371,007 + TX73_024730 0.12 -0.3 5,371,030 + TX73_024730 0.13 -1.0 5,371,030 + TX73_024730 0.13 +0.1 5,371,031 - TX73_024730 0.13 -0.8 5,371,038 - TX73_024730 0.14 +0.6 5,371,063 - TX73_024730 0.15 +0.1 5,371,072 + TX73_024730 0.16 -0.4 5,371,080 - TX73_024730 0.17 -1.6 5,371,116 + TX73_024730 0.19 -0.3 5,371,116 - TX73_024730 0.19 -0.0 5,371,122 - TX73_024730 0.19 -1.0 5,371,124 - TX73_024730 0.19 +0.7 5,371,153 + TX73_024730 0.21 -0.2 5,371,153 + TX73_024730 0.21 -1.2 5,371,161 - TX73_024730 0.22 -2.4 5,371,166 - TX73_024730 0.22 -0.0 5,371,166 - TX73_024730 0.22 -0.2 5,371,225 - TX73_024730 0.25 -0.7 5,371,228 + TX73_024730 0.26 -0.3 5,371,328 + TX73_024730 0.32 -0.9 5,371,336 - TX73_024730 0.32 +0.1 5,371,336 - TX73_024730 0.32 +0.8 5,371,348 + TX73_024730 0.33 -0.2 5,371,356 - TX73_024730 0.34 -0.3 5,371,366 + TX73_024730 0.34 -0.1 5,371,404 + TX73_024730 0.37 -1.1 5,371,404 + TX73_024730 0.37 -0.8 5,371,409 + TX73_024730 0.37 +0.3 5,371,417 - TX73_024730 0.37 -0.2 5,371,417 - TX73_024730 0.37 -0.4 5,371,422 - TX73_024730 0.38 -0.6 5,371,511 + TX73_024730 0.43 +0.2 5,371,514 + TX73_024730 0.43 +0.0 5,371,568 + TX73_024730 0.47 +0.7 5,371,576 + TX73_024730 0.47 +0.3 5,371,578 + TX73_024730 0.47 -0.3 5,371,583 + TX73_024730 0.48 -0.3 5,371,584 - TX73_024730 0.48 +0.0 5,371,584 - TX73_024730 0.48 -1.0 5,371,586 - TX73_024730 0.48 -0.3 5,371,705 - TX73_024730 0.55 -1.0 5,371,705 - TX73_024730 0.55 -0.5 5,371,755 - TX73_024730 0.58 -0.5 5,371,768 - TX73_024730 0.59 +0.3 5,371,795 + TX73_024730 0.61 +0.6 5,371,841 - TX73_024730 0.64 +1.2 5,371,879 + TX73_024730 0.66 -0.7 5,371,886 + TX73_024730 0.66 +0.8 5,371,902 + TX73_024730 0.67 -2.9 5,371,936 + TX73_024730 0.69 +0.3 5,371,936 + TX73_024730 0.69 -0.7 5,371,936 + TX73_024730 0.69 +0.0 5,371,944 - TX73_024730 0.70 +0.5 5,371,959 + TX73_024730 0.71 -0.6 5,372,021 + TX73_024730 0.75 -0.0 5,372,029 - TX73_024730 0.75 +0.7 5,372,029 - TX73_024730 0.75 +0.2 5,372,040 - TX73_024730 0.76 +1.0 5,372,084 - TX73_024730 0.79 -0.6 5,372,104 + TX73_024730 0.80 +0.2 5,372,104 + TX73_024730 0.80 +0.3 5,372,128 + TX73_024730 0.81 -0.8 5,372,128 + TX73_024730 0.81 +1.5 5,372,135 + TX73_024730 0.82 -0.5 5,372,135 + TX73_024730 0.82 -1.2 5,372,135 + TX73_024730 0.82 -0.4 5,372,148 + TX73_024730 0.83 -0.5 5,372,148 + TX73_024730 0.83 +0.4 5,372,148 + TX73_024730 0.83 -0.9 5,372,148 + TX73_024730 0.83 -1.5 5,372,156 - TX73_024730 0.83 -0.8 5,372,204 - TX73_024730 0.86 +0.4 5,372,259 + TX73_024730 0.89 -0.3 5,372,355 + +0.4 5,372,363 - -0.2 5,372,365 - -1.1 5,372,382 + +0.5 5,372,382 + +1.1 5,372,385 - +0.0 5,372,388 - +0.0 5,372,393 - -0.2 5,372,414 - +0.5 5,372,441 - -0.3 5,372,441 - -1.1 5,372,444 + +0.2 5,372,446 - -0.9 5,372,464 + -0.9 5,372,467 - +0.6 5,372,471 + -0.5 5,372,471 + +0.1 5,372,471 + -0.9 5,372,479 - -1.6 5,372,479 - +0.4 5,372,479 - +0.2 5,372,484 - +0.2 5,372,492 + -0.6 5,372,516 + +0.6 5,372,516 + +0.3 5,372,516 + +0.5 5,372,522 + +0.7 5,372,524 - +0.0 5,372,532 - -0.5 5,372,572 + TX73_024735 0.14 -0.2 5,372,580 - TX73_024735 0.18 -0.2 5,372,591 + TX73_024735 0.23 +0.6 5,372,597 + TX73_024735 0.25 -0.7 5,372,602 + TX73_024735 0.28 +0.0 5,372,605 - TX73_024735 0.29 +0.3 5,372,609 + TX73_024735 0.31 -0.1 5,372,624 + TX73_024735 0.38 +0.1 5,372,632 - TX73_024735 0.42 -0.2 5,372,686 + TX73_024735 0.67 -0.7 5,372,695 - TX73_024735 0.71 +1.6 5,372,714 + TX73_024735 0.80 +0.3 5,372,714 + TX73_024735 0.80 -1.0 5,372,722 - TX73_024735 0.83 -1.5 5,372,722 - TX73_024735 0.83 +0.6 5,372,741 + -0.7 5,372,764 + -0.2 5,372,818 + +0.5 5,372,824 - -0.3 5,372,860 + -0.8 5,372,925 + +0.4 5,372,933 - -1.0 5,372,973 - -0.5 5,373,002 + TX73_024740 0.11 -1.0 5,373,010 - TX73_024740 0.13 -0.3 5,373,010 - TX73_024740 0.13 -0.4 5,373,022 + TX73_024740 0.15 +0.2 5,373,023 - TX73_024740 0.15 +0.7 5,373,025 - TX73_024740 0.15 -0.0 5,373,033 + TX73_024740 0.17 -0.8 5,373,052 + TX73_024740 0.20 +0.5 5,373,062 + TX73_024740 0.22 -0.1 5,373,062 + TX73_024740 0.22 -0.3 5,373,065 - TX73_024740 0.23 -0.0 5,373,091 - TX73_024740 0.28 -0.2 5,373,093 + TX73_024740 0.28 -1.3 5,373,093 + TX73_024740 0.28 -0.5 5,373,093 + TX73_024740 0.28 -0.3 5,373,096 - TX73_024740 0.29 +0.4 5,373,097 - TX73_024740 0.29 -0.1 5,373,101 - TX73_024740 0.30 -0.6 5,373,186 + TX73_024740 0.46 +0.0 5,373,186 + TX73_024740 0.46 +0.3 5,373,225 + TX73_024740 0.53 -0.1 5,373,225 + TX73_024740 0.53 +0.6 5,373,233 - TX73_024740 0.54 +0.0 5,373,233 - TX73_024740 0.54 +0.0 5,373,241 + TX73_024740 0.56 +0.0 5,373,246 + TX73_024740 0.57 -1.0 5,373,256 + TX73_024740 0.59 +0.4 5,373,259 - TX73_024740 0.59 +0.2 5,373,281 + TX73_024740 0.63 -1.1 5,373,301 - TX73_024740 0.67 -0.7 5,373,301 - TX73_024740 0.67 -0.7 5,373,310 + TX73_024740 0.69 -1.8 5,373,333 + TX73_024740 0.73 -0.5 5,373,342 - TX73_024740 0.75 +0.6 5,373,356 + TX73_024740 0.77 -1.6 5,373,401 - TX73_024740 0.86 -0.2 5,373,403 + TX73_024740 0.86 +0.2 5,373,406 + TX73_024740 0.87 -0.1 5,373,414 - TX73_024740 0.88 +1.0 5,373,424 + -0.5
Or see this region's nucleotide sequence