Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_024230

Experiment: Citraconic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_024225 and TX73_024230 are separated by 156 nucleotidesTX73_024230 and TX73_024235 overlap by 4 nucleotides TX73_024225: TX73_024225 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 5,252,630 to 5,254,111 _024225 TX73_024230: TX73_024230 - trehalose-phosphatase, at 5,254,268 to 5,255,065 _024230 TX73_024235: TX73_024235 - MFS transporter, at 5,255,062 to 5,256,549 _024235 Position (kb) 5254 5255 5256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5253.269 kb on - strand, within TX73_024225at 5253.279 kb on + strand, within TX73_024225at 5253.288 kb on - strand, within TX73_024225at 5253.288 kb on - strand, within TX73_024225at 5253.293 kb on + strand, within TX73_024225at 5253.335 kb on - strand, within TX73_024225at 5253.337 kb on + strand, within TX73_024225at 5253.355 kb on - strand, within TX73_024225at 5253.362 kb on - strand, within TX73_024225at 5253.362 kb on - strand, within TX73_024225at 5253.373 kb on + strand, within TX73_024225at 5253.373 kb on + strand, within TX73_024225at 5253.381 kb on - strand, within TX73_024225at 5253.383 kb on + strand, within TX73_024225at 5253.383 kb on + strand, within TX73_024225at 5253.384 kb on + strand, within TX73_024225at 5253.391 kb on - strand, within TX73_024225at 5253.392 kb on + strand, within TX73_024225at 5253.440 kb on + strand, within TX73_024225at 5253.467 kb on + strand, within TX73_024225at 5253.476 kb on - strand, within TX73_024225at 5253.491 kb on - strand, within TX73_024225at 5253.516 kb on + strand, within TX73_024225at 5253.519 kb on - strand, within TX73_024225at 5253.562 kb on + strand, within TX73_024225at 5253.562 kb on + strand, within TX73_024225at 5253.562 kb on + strand, within TX73_024225at 5253.562 kb on + strand, within TX73_024225at 5253.562 kb on + strand, within TX73_024225at 5253.569 kb on + strand, within TX73_024225at 5253.570 kb on - strand, within TX73_024225at 5253.570 kb on - strand, within TX73_024225at 5253.580 kb on - strand, within TX73_024225at 5253.582 kb on - strand, within TX73_024225at 5253.587 kb on - strand, within TX73_024225at 5253.597 kb on - strand, within TX73_024225at 5253.598 kb on + strand, within TX73_024225at 5253.615 kb on + strand, within TX73_024225at 5253.615 kb on + strand, within TX73_024225at 5253.617 kb on - strand, within TX73_024225at 5253.631 kb on + strand, within TX73_024225at 5253.631 kb on + strand, within TX73_024225at 5253.633 kb on - strand, within TX73_024225at 5253.636 kb on + strand, within TX73_024225at 5253.639 kb on - strand, within TX73_024225at 5253.639 kb on - strand, within TX73_024225at 5253.639 kb on - strand, within TX73_024225at 5253.639 kb on - strand, within TX73_024225at 5253.654 kb on - strand, within TX73_024225at 5253.670 kb on - strand, within TX73_024225at 5253.685 kb on + strand, within TX73_024225at 5253.715 kb on + strand, within TX73_024225at 5253.715 kb on + strand, within TX73_024225at 5253.720 kb on + strand, within TX73_024225at 5253.740 kb on - strand, within TX73_024225at 5253.740 kb on - strand, within TX73_024225at 5253.749 kb on + strand, within TX73_024225at 5253.773 kb on + strand, within TX73_024225at 5253.818 kb on + strand, within TX73_024225at 5253.821 kb on - strand, within TX73_024225at 5253.826 kb on - strand, within TX73_024225at 5253.826 kb on - strand, within TX73_024225at 5253.826 kb on - strand, within TX73_024225at 5253.831 kb on - strand, within TX73_024225at 5253.849 kb on - strand, within TX73_024225at 5253.904 kb on + strand, within TX73_024225at 5253.905 kb on + strand, within TX73_024225at 5253.913 kb on - strand, within TX73_024225at 5253.922 kb on + strand, within TX73_024225at 5253.927 kb on + strand, within TX73_024225at 5253.930 kb on - strand, within TX73_024225at 5253.960 kb on + strand, within TX73_024225at 5253.995 kb on + strandat 5253.999 kb on - strandat 5254.003 kb on - strandat 5254.072 kb on - strandat 5254.072 kb on - strandat 5254.075 kb on - strandat 5254.088 kb on + strandat 5254.088 kb on + strandat 5254.124 kb on + strandat 5254.124 kb on + strandat 5254.124 kb on + strandat 5254.131 kb on + strandat 5254.132 kb on - strandat 5254.141 kb on - strandat 5254.147 kb on + strandat 5254.170 kb on - strandat 5254.195 kb on - strandat 5254.257 kb on - strandat 5254.278 kb on + strandat 5254.291 kb on - strandat 5254.340 kb on + strandat 5254.347 kb on + strandat 5254.373 kb on + strand, within TX73_024230at 5254.446 kb on + strand, within TX73_024230at 5254.446 kb on + strand, within TX73_024230at 5254.456 kb on + strand, within TX73_024230at 5254.456 kb on - strand, within TX73_024230at 5254.464 kb on - strand, within TX73_024230at 5254.490 kb on - strand, within TX73_024230at 5254.552 kb on + strand, within TX73_024230at 5254.630 kb on + strand, within TX73_024230at 5254.630 kb on + strand, within TX73_024230at 5254.638 kb on - strand, within TX73_024230at 5254.683 kb on + strand, within TX73_024230at 5254.739 kb on + strand, within TX73_024230at 5254.837 kb on - strand, within TX73_024230at 5254.866 kb on + strand, within TX73_024230at 5254.866 kb on - strand, within TX73_024230at 5254.910 kb on + strand, within TX73_024230at 5254.910 kb on + strand, within TX73_024230at 5254.918 kb on - strand, within TX73_024230at 5254.961 kb on + strand, within TX73_024230at 5254.989 kb on - strandat 5254.994 kb on - strandat 5255.030 kb on + strandat 5255.038 kb on - strandat 5255.038 kb on - strandat 5255.078 kb on + strandat 5255.109 kb on - strandat 5255.111 kb on - strandat 5255.116 kb on - strandat 5255.132 kb on + strandat 5255.140 kb on - strandat 5255.164 kb on + strandat 5255.164 kb on + strandat 5255.172 kb on - strandat 5255.172 kb on - strandat 5255.177 kb on - strandat 5255.211 kb on + strand, within TX73_024235at 5255.216 kb on + strand, within TX73_024235at 5255.219 kb on - strand, within TX73_024235at 5255.221 kb on + strand, within TX73_024235at 5255.224 kb on - strand, within TX73_024235at 5255.228 kb on + strand, within TX73_024235at 5255.228 kb on + strand, within TX73_024235at 5255.236 kb on - strand, within TX73_024235at 5255.257 kb on + strand, within TX73_024235at 5255.272 kb on - strand, within TX73_024235at 5255.276 kb on + strand, within TX73_024235at 5255.331 kb on + strand, within TX73_024235at 5255.331 kb on + strand, within TX73_024235at 5255.343 kb on - strand, within TX73_024235at 5255.345 kb on + strand, within TX73_024235at 5255.400 kb on - strand, within TX73_024235at 5255.405 kb on - strand, within TX73_024235at 5255.440 kb on - strand, within TX73_024235at 5255.472 kb on - strand, within TX73_024235at 5255.521 kb on - strand, within TX73_024235at 5255.559 kb on + strand, within TX73_024235at 5255.567 kb on - strand, within TX73_024235at 5255.603 kb on + strand, within TX73_024235at 5255.607 kb on + strand, within TX73_024235at 5255.613 kb on + strand, within TX73_024235at 5255.616 kb on - strand, within TX73_024235at 5255.646 kb on - strand, within TX73_024235at 5255.659 kb on + strand, within TX73_024235at 5255.665 kb on - strand, within TX73_024235at 5255.667 kb on - strand, within TX73_024235at 5255.669 kb on + strand, within TX73_024235at 5255.669 kb on + strand, within TX73_024235at 5255.685 kb on + strand, within TX73_024235at 5255.685 kb on + strand, within TX73_024235at 5255.686 kb on - strand, within TX73_024235at 5255.696 kb on + strand, within TX73_024235at 5255.707 kb on + strand, within TX73_024235at 5255.717 kb on + strand, within TX73_024235at 5255.725 kb on - strand, within TX73_024235at 5255.738 kb on - strand, within TX73_024235at 5255.738 kb on - strand, within TX73_024235at 5255.753 kb on - strand, within TX73_024235at 5255.810 kb on - strand, within TX73_024235at 5255.817 kb on - strand, within TX73_024235at 5255.841 kb on + strand, within TX73_024235at 5255.841 kb on + strand, within TX73_024235at 5255.850 kb on + strand, within TX73_024235at 5255.858 kb on - strand, within TX73_024235at 5255.858 kb on - strand, within TX73_024235at 5255.859 kb on + strand, within TX73_024235at 5255.898 kb on + strand, within TX73_024235at 5255.898 kb on + strand, within TX73_024235at 5255.898 kb on + strand, within TX73_024235at 5255.898 kb on + strand, within TX73_024235at 5255.906 kb on - strand, within TX73_024235at 5255.906 kb on - strand, within TX73_024235at 5255.906 kb on - strand, within TX73_024235at 5255.906 kb on - strand, within TX73_024235at 5255.906 kb on - strand, within TX73_024235at 5255.906 kb on - strand, within TX73_024235at 5255.932 kb on - strand, within TX73_024235at 5255.951 kb on + strand, within TX73_024235at 5255.951 kb on + strand, within TX73_024235at 5255.961 kb on + strand, within TX73_024235at 5255.966 kb on + strand, within TX73_024235at 5255.969 kb on - strand, within TX73_024235at 5255.974 kb on - strand, within TX73_024235at 5256.011 kb on + strand, within TX73_024235at 5256.045 kb on + strand, within TX73_024235at 5256.049 kb on - strand, within TX73_024235

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Per-strain Table

Position Strand Gene LocusTag Fraction Citraconic (C); anaerobic
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5,253,269 - TX73_024225 0.43 -0.8
5,253,279 + TX73_024225 0.44 +0.6
5,253,288 - TX73_024225 0.44 +0.4
5,253,288 - TX73_024225 0.44 -0.1
5,253,293 + TX73_024225 0.45 +1.3
5,253,335 - TX73_024225 0.48 +0.7
5,253,337 + TX73_024225 0.48 -0.0
5,253,355 - TX73_024225 0.49 -0.1
5,253,362 - TX73_024225 0.49 -1.1
5,253,362 - TX73_024225 0.49 -0.5
5,253,373 + TX73_024225 0.50 +0.3
5,253,373 + TX73_024225 0.50 +0.1
5,253,381 - TX73_024225 0.51 +0.5
5,253,383 + TX73_024225 0.51 -0.1
5,253,383 + TX73_024225 0.51 +0.7
5,253,384 + TX73_024225 0.51 -0.1
5,253,391 - TX73_024225 0.51 +0.1
5,253,392 + TX73_024225 0.51 -2.2
5,253,440 + TX73_024225 0.55 +0.2
5,253,467 + TX73_024225 0.56 -0.1
5,253,476 - TX73_024225 0.57 -2.0
5,253,491 - TX73_024225 0.58 +1.0
5,253,516 + TX73_024225 0.60 -0.2
5,253,519 - TX73_024225 0.60 +0.9
5,253,562 + TX73_024225 0.63 +0.1
5,253,562 + TX73_024225 0.63 +0.3
5,253,562 + TX73_024225 0.63 -0.1
5,253,562 + TX73_024225 0.63 +1.0
5,253,562 + TX73_024225 0.63 -0.2
5,253,569 + TX73_024225 0.63 -0.9
5,253,570 - TX73_024225 0.63 -1.1
5,253,570 - TX73_024225 0.63 -0.2
5,253,580 - TX73_024225 0.64 -0.4
5,253,582 - TX73_024225 0.64 -1.5
5,253,587 - TX73_024225 0.65 +2.0
5,253,597 - TX73_024225 0.65 +0.2
5,253,598 + TX73_024225 0.65 +0.2
5,253,615 + TX73_024225 0.66 -0.0
5,253,615 + TX73_024225 0.66 -0.1
5,253,617 - TX73_024225 0.67 -0.3
5,253,631 + TX73_024225 0.68 -1.1
5,253,631 + TX73_024225 0.68 +0.3
5,253,633 - TX73_024225 0.68 -0.8
5,253,636 + TX73_024225 0.68 -0.5
5,253,639 - TX73_024225 0.68 -0.0
5,253,639 - TX73_024225 0.68 +0.9
5,253,639 - TX73_024225 0.68 +0.1
5,253,639 - TX73_024225 0.68 -0.5
5,253,654 - TX73_024225 0.69 +0.3
5,253,670 - TX73_024225 0.70 -0.3
5,253,685 + TX73_024225 0.71 +0.2
5,253,715 + TX73_024225 0.73 -1.1
5,253,715 + TX73_024225 0.73 +0.4
5,253,720 + TX73_024225 0.74 +0.2
5,253,740 - TX73_024225 0.75 -0.6
5,253,740 - TX73_024225 0.75 -0.0
5,253,749 + TX73_024225 0.76 -0.4
5,253,773 + TX73_024225 0.77 -0.5
5,253,818 + TX73_024225 0.80 -0.6
5,253,821 - TX73_024225 0.80 +1.5
5,253,826 - TX73_024225 0.81 +0.5
5,253,826 - TX73_024225 0.81 -0.1
5,253,826 - TX73_024225 0.81 +0.7
5,253,831 - TX73_024225 0.81 -1.2
5,253,849 - TX73_024225 0.82 +0.7
5,253,904 + TX73_024225 0.86 -0.9
5,253,905 + TX73_024225 0.86 +0.8
5,253,913 - TX73_024225 0.87 -0.4
5,253,922 + TX73_024225 0.87 -0.2
5,253,927 + TX73_024225 0.88 +0.4
5,253,930 - TX73_024225 0.88 +0.3
5,253,960 + TX73_024225 0.90 +0.6
5,253,995 + -0.5
5,253,999 - -0.1
5,254,003 - -0.6
5,254,072 - +0.9
5,254,072 - +0.6
5,254,075 - -0.7
5,254,088 + -0.5
5,254,088 + -0.3
5,254,124 + -2.0
5,254,124 + +1.0
5,254,124 + -0.6
5,254,131 + +0.1
5,254,132 - -0.4
5,254,141 - +0.0
5,254,147 + -0.1
5,254,170 - -0.1
5,254,195 - -1.5
5,254,257 - -0.1
5,254,278 + -0.3
5,254,291 - -2.0
5,254,340 + -2.0
5,254,347 + -0.0
5,254,373 + TX73_024230 0.13 -1.3
5,254,446 + TX73_024230 0.22 -1.2
5,254,446 + TX73_024230 0.22 -0.6
5,254,456 + TX73_024230 0.24 -1.5
5,254,456 - TX73_024230 0.24 -0.6
5,254,464 - TX73_024230 0.25 -1.0
5,254,490 - TX73_024230 0.28 -1.0
5,254,552 + TX73_024230 0.36 -1.3
5,254,630 + TX73_024230 0.45 -1.3
5,254,630 + TX73_024230 0.45 +0.4
5,254,638 - TX73_024230 0.46 -0.3
5,254,683 + TX73_024230 0.52 -1.2
5,254,739 + TX73_024230 0.59 -0.6
5,254,837 - TX73_024230 0.71 -1.3
5,254,866 + TX73_024230 0.75 -1.7
5,254,866 - TX73_024230 0.75 -1.7
5,254,910 + TX73_024230 0.80 -1.7
5,254,910 + TX73_024230 0.80 -0.8
5,254,918 - TX73_024230 0.81 -1.2
5,254,961 + TX73_024230 0.87 -1.2
5,254,989 - -0.3
5,254,994 - -0.5
5,255,030 + -1.8
5,255,038 - -0.3
5,255,038 - -0.8
5,255,078 + -0.0
5,255,109 - +0.0
5,255,111 - -0.8
5,255,116 - -0.7
5,255,132 + -1.5
5,255,140 - -0.1
5,255,164 + -0.0
5,255,164 + -0.1
5,255,172 - -0.5
5,255,172 - -0.0
5,255,177 - -0.6
5,255,211 + TX73_024235 0.10 -0.0
5,255,216 + TX73_024235 0.10 -0.1
5,255,219 - TX73_024235 0.11 +0.4
5,255,221 + TX73_024235 0.11 +0.4
5,255,224 - TX73_024235 0.11 +0.5
5,255,228 + TX73_024235 0.11 -0.0
5,255,228 + TX73_024235 0.11 -1.6
5,255,236 - TX73_024235 0.12 -1.1
5,255,257 + TX73_024235 0.13 +0.6
5,255,272 - TX73_024235 0.14 +0.1
5,255,276 + TX73_024235 0.14 +0.1
5,255,331 + TX73_024235 0.18 +0.2
5,255,331 + TX73_024235 0.18 +0.3
5,255,343 - TX73_024235 0.19 +0.9
5,255,345 + TX73_024235 0.19 +0.3
5,255,400 - TX73_024235 0.23 +0.6
5,255,405 - TX73_024235 0.23 +0.6
5,255,440 - TX73_024235 0.25 -0.7
5,255,472 - TX73_024235 0.28 -0.1
5,255,521 - TX73_024235 0.31 -1.2
5,255,559 + TX73_024235 0.33 +0.7
5,255,567 - TX73_024235 0.34 -0.5
5,255,603 + TX73_024235 0.36 -0.4
5,255,607 + TX73_024235 0.37 +0.1
5,255,613 + TX73_024235 0.37 -0.3
5,255,616 - TX73_024235 0.37 +0.0
5,255,646 - TX73_024235 0.39 +0.4
5,255,659 + TX73_024235 0.40 +0.5
5,255,665 - TX73_024235 0.41 -1.3
5,255,667 - TX73_024235 0.41 -0.6
5,255,669 + TX73_024235 0.41 +0.8
5,255,669 + TX73_024235 0.41 +0.5
5,255,685 + TX73_024235 0.42 +0.8
5,255,685 + TX73_024235 0.42 +0.5
5,255,686 - TX73_024235 0.42 -0.0
5,255,696 + TX73_024235 0.43 -0.3
5,255,707 + TX73_024235 0.43 -1.4
5,255,717 + TX73_024235 0.44 +0.0
5,255,725 - TX73_024235 0.45 -1.6
5,255,738 - TX73_024235 0.45 -0.7
5,255,738 - TX73_024235 0.45 +1.1
5,255,753 - TX73_024235 0.46 -0.3
5,255,810 - TX73_024235 0.50 +0.3
5,255,817 - TX73_024235 0.51 -2.8
5,255,841 + TX73_024235 0.52 +0.0
5,255,841 + TX73_024235 0.52 -0.4
5,255,850 + TX73_024235 0.53 -0.2
5,255,858 - TX73_024235 0.53 +0.2
5,255,858 - TX73_024235 0.53 -1.1
5,255,859 + TX73_024235 0.54 -0.3
5,255,898 + TX73_024235 0.56 -0.4
5,255,898 + TX73_024235 0.56 -1.0
5,255,898 + TX73_024235 0.56 +0.0
5,255,898 + TX73_024235 0.56 -1.6
5,255,906 - TX73_024235 0.57 +1.7
5,255,906 - TX73_024235 0.57 +2.1
5,255,906 - TX73_024235 0.57 -0.3
5,255,906 - TX73_024235 0.57 +0.4
5,255,906 - TX73_024235 0.57 -0.7
5,255,906 - TX73_024235 0.57 -0.6
5,255,932 - TX73_024235 0.58 -0.1
5,255,951 + TX73_024235 0.60 -0.1
5,255,951 + TX73_024235 0.60 +0.6
5,255,961 + TX73_024235 0.60 +2.0
5,255,966 + TX73_024235 0.61 -0.0
5,255,969 - TX73_024235 0.61 +0.1
5,255,974 - TX73_024235 0.61 -1.0
5,256,011 + TX73_024235 0.64 +0.4
5,256,045 + TX73_024235 0.66 -0.5
5,256,049 - TX73_024235 0.66 +0.3

Or see this region's nucleotide sequence