Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003925

Experiment: Citraconic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003915 and TX73_003920 are separated by 4 nucleotidesTX73_003920 and TX73_003925 are separated by 19 nucleotidesTX73_003925 and TX73_003930 are separated by 197 nucleotides TX73_003915: TX73_003915 - ATP-binding cassette domain-containing protein, at 838,917 to 839,975 _003915 TX73_003920: TX73_003920 - ABC transporter permease, at 839,980 to 840,870 _003920 TX73_003925: TX73_003925 - ABC transporter permease, at 840,890 to 841,843 _003925 TX73_003930: TX73_003930 - ABC transporter substrate-binding protein, at 842,041 to 843,702 _003930 Position (kb) 840 841 842Strain fitness (log2 ratio) -1 0 1 2 3at 839.895 kb on - strandat 840.007 kb on - strandat 840.032 kb on - strandat 840.056 kb on + strandat 840.149 kb on - strand, within TX73_003920at 840.154 kb on - strand, within TX73_003920at 840.196 kb on + strand, within TX73_003920at 840.204 kb on - strand, within TX73_003920at 840.330 kb on - strand, within TX73_003920at 840.330 kb on - strand, within TX73_003920at 840.381 kb on - strand, within TX73_003920at 840.435 kb on + strand, within TX73_003920at 840.443 kb on - strand, within TX73_003920at 840.449 kb on + strand, within TX73_003920at 840.457 kb on - strand, within TX73_003920at 840.524 kb on - strand, within TX73_003920at 840.524 kb on - strand, within TX73_003920at 840.624 kb on + strand, within TX73_003920at 840.624 kb on + strand, within TX73_003920at 840.624 kb on + strand, within TX73_003920at 840.632 kb on - strand, within TX73_003920at 840.632 kb on - strand, within TX73_003920at 840.701 kb on - strand, within TX73_003920at 840.737 kb on + strand, within TX73_003920at 840.825 kb on - strandat 840.881 kb on + strandat 840.896 kb on - strandat 840.896 kb on - strandat 840.896 kb on - strandat 841.020 kb on + strand, within TX73_003925at 841.033 kb on + strand, within TX73_003925at 841.033 kb on + strand, within TX73_003925at 841.033 kb on + strand, within TX73_003925at 841.041 kb on - strand, within TX73_003925at 841.077 kb on - strand, within TX73_003925at 841.096 kb on + strand, within TX73_003925at 841.104 kb on - strand, within TX73_003925at 841.154 kb on - strand, within TX73_003925at 841.156 kb on + strand, within TX73_003925at 841.181 kb on - strand, within TX73_003925at 841.285 kb on + strand, within TX73_003925at 841.293 kb on - strand, within TX73_003925at 841.310 kb on + strand, within TX73_003925at 841.310 kb on + strand, within TX73_003925at 841.318 kb on - strand, within TX73_003925at 841.573 kb on + strand, within TX73_003925at 841.686 kb on + strand, within TX73_003925at 841.712 kb on - strand, within TX73_003925at 841.790 kb on + strandat 841.812 kb on - strandat 841.828 kb on + strandat 841.835 kb on + strandat 841.838 kb on - strandat 841.851 kb on - strandat 841.873 kb on - strandat 841.886 kb on - strandat 841.904 kb on - strandat 841.971 kb on + strandat 841.973 kb on + strandat 842.002 kb on + strandat 842.002 kb on + strandat 842.007 kb on + strandat 842.010 kb on - strandat 842.023 kb on + strandat 842.036 kb on + strandat 842.063 kb on - strandat 842.107 kb on - strandat 842.126 kb on - strandat 842.127 kb on + strandat 842.135 kb on - strandat 842.144 kb on + strandat 842.152 kb on - strandat 842.177 kb on + strandat 842.185 kb on - strandat 842.273 kb on + strand, within TX73_003930at 842.509 kb on + strand, within TX73_003930at 842.517 kb on - strand, within TX73_003930at 842.533 kb on + strand, within TX73_003930at 842.541 kb on - strand, within TX73_003930at 842.655 kb on + strand, within TX73_003930at 842.779 kb on - strand, within TX73_003930at 842.795 kb on + strand, within TX73_003930at 842.803 kb on - strand, within TX73_003930

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Per-strain Table

Position Strand Gene LocusTag Fraction Citraconic (C); anaerobic
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839,895 - -0.0
840,007 - +1.0
840,032 - +0.3
840,056 + +0.4
840,149 - TX73_003920 0.19 +0.5
840,154 - TX73_003920 0.20 -0.9
840,196 + TX73_003920 0.24 +0.5
840,204 - TX73_003920 0.25 +0.2
840,330 - TX73_003920 0.39 -1.0
840,330 - TX73_003920 0.39 -0.1
840,381 - TX73_003920 0.45 +1.3
840,435 + TX73_003920 0.51 +1.0
840,443 - TX73_003920 0.52 +0.2
840,449 + TX73_003920 0.53 +0.3
840,457 - TX73_003920 0.54 -0.0
840,524 - TX73_003920 0.61 +0.6
840,524 - TX73_003920 0.61 -0.5
840,624 + TX73_003920 0.72 -0.3
840,624 + TX73_003920 0.72 -1.0
840,624 + TX73_003920 0.72 -0.6
840,632 - TX73_003920 0.73 +0.4
840,632 - TX73_003920 0.73 +0.9
840,701 - TX73_003920 0.81 +0.4
840,737 + TX73_003920 0.85 +0.3
840,825 - -0.4
840,881 + +1.0
840,896 - -0.4
840,896 - +0.1
840,896 - +0.2
841,020 + TX73_003925 0.14 +0.6
841,033 + TX73_003925 0.15 +0.9
841,033 + TX73_003925 0.15 +0.2
841,033 + TX73_003925 0.15 -0.1
841,041 - TX73_003925 0.16 -0.7
841,077 - TX73_003925 0.20 +0.7
841,096 + TX73_003925 0.22 +0.4
841,104 - TX73_003925 0.22 +0.6
841,154 - TX73_003925 0.28 +0.9
841,156 + TX73_003925 0.28 -0.3
841,181 - TX73_003925 0.31 +0.5
841,285 + TX73_003925 0.41 -0.4
841,293 - TX73_003925 0.42 +0.3
841,310 + TX73_003925 0.44 -0.5
841,310 + TX73_003925 0.44 -0.4
841,318 - TX73_003925 0.45 +0.0
841,573 + TX73_003925 0.72 -0.1
841,686 + TX73_003925 0.83 +1.0
841,712 - TX73_003925 0.86 -0.1
841,790 + +0.8
841,812 - -0.0
841,828 + -1.3
841,835 + +0.3
841,838 - +0.6
841,851 - -0.2
841,873 - +0.3
841,886 - +0.2
841,904 - +0.8
841,971 + -0.2
841,973 + -1.2
842,002 + -0.7
842,002 + +0.5
842,007 + +0.9
842,010 - +0.3
842,023 + -0.7
842,036 + +0.8
842,063 - -0.1
842,107 - +0.0
842,126 - -0.8
842,127 + +0.1
842,135 - -0.1
842,144 + +2.9
842,152 - -0.8
842,177 + -0.1
842,185 - +0.7
842,273 + TX73_003930 0.14 -0.9
842,509 + TX73_003930 0.28 +0.4
842,517 - TX73_003930 0.29 -0.1
842,533 + TX73_003930 0.30 -0.4
842,541 - TX73_003930 0.30 +0.2
842,655 + TX73_003930 0.37 -0.4
842,779 - TX73_003930 0.44 -1.0
842,795 + TX73_003930 0.45 -0.8
842,803 - TX73_003930 0.46 +0.8

Or see this region's nucleotide sequence