Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014980

Experiment: Citraconic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_014975 and TX73_014980 are separated by 36 nucleotidesTX73_014980 and TX73_014985 are separated by 130 nucleotidesTX73_014985 and TX73_014990 are separated by 10 nucleotides TX73_014975: TX73_014975 - SurA N-terminal domain-containing protein, at 3,266,040 to 3,267,941 _014975 TX73_014980: TX73_014980 - anthranilate phosphoribosyltransferase, at 3,267,978 to 3,268,994 _014980 TX73_014985: TX73_014985 - indole-3-glycerol phosphate synthase TrpC, at 3,269,125 to 3,269,922 _014985 TX73_014990: TX73_014990 - cyclic pyranopterin monophosphate synthase MoaC, at 3,269,933 to 3,270,463 _014990 Position (kb) 3267 3268 3269Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3266.999 kb on + strand, within TX73_014975at 3266.999 kb on + strand, within TX73_014975at 3267.069 kb on + strand, within TX73_014975at 3267.080 kb on + strand, within TX73_014975at 3267.080 kb on + strand, within TX73_014975at 3267.080 kb on + strand, within TX73_014975at 3267.085 kb on + strand, within TX73_014975at 3267.095 kb on + strand, within TX73_014975at 3267.103 kb on - strand, within TX73_014975at 3267.132 kb on + strand, within TX73_014975at 3267.132 kb on + strand, within TX73_014975at 3267.132 kb on + strand, within TX73_014975at 3267.169 kb on - strand, within TX73_014975at 3267.172 kb on - strand, within TX73_014975at 3267.217 kb on - strand, within TX73_014975at 3267.223 kb on - strand, within TX73_014975at 3267.482 kb on + strand, within TX73_014975at 3267.490 kb on - strand, within TX73_014975at 3267.521 kb on + strand, within TX73_014975at 3267.567 kb on + strand, within TX73_014975at 3267.567 kb on + strand, within TX73_014975at 3267.584 kb on + strand, within TX73_014975at 3267.679 kb on + strand, within TX73_014975at 3267.684 kb on + strand, within TX73_014975at 3267.701 kb on + strand, within TX73_014975at 3267.716 kb on + strand, within TX73_014975at 3267.717 kb on + strand, within TX73_014975at 3267.868 kb on + strandat 3267.872 kb on + strandat 3267.886 kb on + strandat 3267.889 kb on - strandat 3267.930 kb on + strandat 3268.989 kb on + strandat 3269.007 kb on + strandat 3269.007 kb on + strandat 3269.014 kb on - strandat 3269.015 kb on - strandat 3269.036 kb on - strandat 3269.053 kb on - strandat 3269.069 kb on - strandat 3269.099 kb on + strandat 3269.107 kb on - strandat 3269.113 kb on + strandat 3269.895 kb on - strandat 3269.910 kb on - strandat 3269.916 kb on + strandat 3269.935 kb on + strandat 3269.947 kb on + strandat 3269.963 kb on - strandat 3269.964 kb on - strandat 3269.964 kb on - strandat 3269.975 kb on + strandat 3269.976 kb on - strandat 3269.984 kb on - strandat 3269.994 kb on - strand, within TX73_014990

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Per-strain Table

Position Strand Gene LocusTag Fraction Citraconic (C); anaerobic
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3,266,999 + TX73_014975 0.50 +0.1
3,266,999 + TX73_014975 0.50 -2.3
3,267,069 + TX73_014975 0.54 -1.5
3,267,080 + TX73_014975 0.55 +1.3
3,267,080 + TX73_014975 0.55 -0.3
3,267,080 + TX73_014975 0.55 +0.3
3,267,085 + TX73_014975 0.55 +0.3
3,267,095 + TX73_014975 0.55 +3.7
3,267,103 - TX73_014975 0.56 -0.2
3,267,132 + TX73_014975 0.57 -0.9
3,267,132 + TX73_014975 0.57 +0.1
3,267,132 + TX73_014975 0.57 -0.1
3,267,169 - TX73_014975 0.59 +0.7
3,267,172 - TX73_014975 0.60 +1.3
3,267,217 - TX73_014975 0.62 -0.3
3,267,223 - TX73_014975 0.62 -0.5
3,267,482 + TX73_014975 0.76 +2.1
3,267,490 - TX73_014975 0.76 -0.9
3,267,521 + TX73_014975 0.78 -0.9
3,267,567 + TX73_014975 0.80 -0.7
3,267,567 + TX73_014975 0.80 -1.1
3,267,584 + TX73_014975 0.81 +1.1
3,267,679 + TX73_014975 0.86 -0.8
3,267,684 + TX73_014975 0.86 -0.5
3,267,701 + TX73_014975 0.87 +0.3
3,267,716 + TX73_014975 0.88 +0.1
3,267,717 + TX73_014975 0.88 +0.1
3,267,868 + +0.9
3,267,872 + +0.1
3,267,886 + +0.7
3,267,889 - -0.5
3,267,930 + +0.6
3,268,989 + -1.6
3,269,007 + -0.6
3,269,007 + -0.9
3,269,014 - +0.0
3,269,015 - -2.5
3,269,036 - -1.0
3,269,053 - -0.2
3,269,069 - -0.1
3,269,099 + +0.3
3,269,107 - +0.6
3,269,113 + +0.4
3,269,895 - +0.3
3,269,910 - -0.4
3,269,916 + -1.4
3,269,935 + +0.5
3,269,947 + +0.4
3,269,963 - -0.1
3,269,964 - +0.8
3,269,964 - -1.3
3,269,975 + -0.1
3,269,976 - +0.3
3,269,984 - +0.1
3,269,994 - TX73_014990 0.11 -0.1

Or see this region's nucleotide sequence