Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002305

Experiment: Citraconic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002295 and TX73_002300 are separated by 128 nucleotidesTX73_002300 and TX73_002305 are separated by 200 nucleotidesTX73_002305 and TX73_002310 overlap by 4 nucleotides TX73_002295: TX73_002295 - tRNA (guanine(46)-N(7))-methyltransferase TrmB, at 488,670 to 489,413 _002295 TX73_002300: TX73_002300 - helix-turn-helix domain-containing protein, at 489,542 to 489,961 _002300 TX73_002305: TX73_002305 - apolipoprotein N-acyltransferase, at 490,162 to 491,772 _002305 TX73_002310: TX73_002310 - hemolysin family protein, at 491,769 to 492,914 _002310 Position (kb) 490 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 489.163 kb on - strand, within TX73_002295at 489.197 kb on + strand, within TX73_002295at 489.197 kb on - strand, within TX73_002295at 489.205 kb on + strand, within TX73_002295at 489.227 kb on + strand, within TX73_002295at 489.288 kb on + strand, within TX73_002295at 489.296 kb on - strand, within TX73_002295at 489.313 kb on + strand, within TX73_002295at 489.343 kb on - strandat 489.343 kb on - strandat 489.356 kb on - strandat 489.358 kb on + strandat 489.373 kb on + strandat 489.381 kb on - strandat 489.432 kb on + strandat 489.432 kb on + strandat 489.440 kb on - strandat 489.440 kb on - strandat 489.446 kb on + strandat 489.451 kb on + strandat 489.451 kb on + strandat 489.459 kb on - strandat 489.459 kb on - strandat 489.631 kb on + strand, within TX73_002300at 489.643 kb on + strand, within TX73_002300at 489.643 kb on + strand, within TX73_002300at 489.699 kb on + strand, within TX73_002300at 489.710 kb on - strand, within TX73_002300at 489.722 kb on - strand, within TX73_002300at 489.726 kb on - strand, within TX73_002300at 489.738 kb on - strand, within TX73_002300at 489.767 kb on + strand, within TX73_002300at 489.767 kb on + strand, within TX73_002300at 489.787 kb on + strand, within TX73_002300at 489.795 kb on - strand, within TX73_002300at 489.810 kb on + strand, within TX73_002300at 489.849 kb on + strand, within TX73_002300at 489.882 kb on + strand, within TX73_002300at 489.890 kb on - strand, within TX73_002300at 489.947 kb on - strandat 489.970 kb on + strandat 489.972 kb on + strandat 489.972 kb on + strandat 489.972 kb on + strandat 489.980 kb on - strandat 489.980 kb on - strandat 489.995 kb on + strandat 489.995 kb on + strandat 489.997 kb on - strandat 490.010 kb on + strandat 490.133 kb on - strandat 491.138 kb on + strand, within TX73_002305at 491.146 kb on - strand, within TX73_002305at 491.146 kb on - strand, within TX73_002305at 491.146 kb on - strand, within TX73_002305at 491.146 kb on - strand, within TX73_002305at 491.146 kb on - strand, within TX73_002305at 491.146 kb on - strand, within TX73_002305at 491.161 kb on - strand, within TX73_002305at 491.719 kb on - strandat 491.749 kb on + strandat 491.749 kb on + strandat 491.782 kb on + strandat 491.798 kb on + strandat 491.805 kb on - strandat 491.806 kb on - strandat 491.832 kb on - strandat 491.842 kb on + strandat 491.850 kb on - strandat 491.857 kb on + strandat 491.865 kb on - strandat 491.907 kb on - strand, within TX73_002310at 491.931 kb on - strand, within TX73_002310at 491.934 kb on + strand, within TX73_002310at 491.952 kb on - strand, within TX73_002310at 491.952 kb on - strand, within TX73_002310at 491.979 kb on + strand, within TX73_002310at 492.056 kb on - strand, within TX73_002310at 492.056 kb on - strand, within TX73_002310at 492.101 kb on + strand, within TX73_002310at 492.101 kb on + strand, within TX73_002310at 492.101 kb on + strand, within TX73_002310at 492.106 kb on + strand, within TX73_002310at 492.109 kb on - strand, within TX73_002310at 492.110 kb on - strand, within TX73_002310at 492.177 kb on - strand, within TX73_002310at 492.227 kb on + strand, within TX73_002310at 492.235 kb on - strand, within TX73_002310at 492.271 kb on + strand, within TX73_002310at 492.288 kb on - strand, within TX73_002310at 492.288 kb on - strand, within TX73_002310at 492.299 kb on - strand, within TX73_002310at 492.331 kb on + strand, within TX73_002310at 492.336 kb on - strand, within TX73_002310at 492.339 kb on - strand, within TX73_002310at 492.339 kb on - strand, within TX73_002310at 492.375 kb on + strand, within TX73_002310at 492.383 kb on - strand, within TX73_002310at 492.395 kb on + strand, within TX73_002310at 492.418 kb on + strand, within TX73_002310at 492.423 kb on - strand, within TX73_002310at 492.433 kb on + strand, within TX73_002310at 492.448 kb on + strand, within TX73_002310at 492.448 kb on + strand, within TX73_002310at 492.448 kb on + strand, within TX73_002310at 492.456 kb on - strand, within TX73_002310at 492.456 kb on - strand, within TX73_002310at 492.473 kb on + strand, within TX73_002310at 492.494 kb on - strand, within TX73_002310at 492.494 kb on - strand, within TX73_002310at 492.530 kb on - strand, within TX73_002310at 492.537 kb on - strand, within TX73_002310at 492.557 kb on + strand, within TX73_002310at 492.557 kb on + strand, within TX73_002310at 492.561 kb on - strand, within TX73_002310at 492.575 kb on - strand, within TX73_002310at 492.621 kb on + strand, within TX73_002310at 492.651 kb on - strand, within TX73_002310at 492.666 kb on + strand, within TX73_002310at 492.669 kb on - strand, within TX73_002310at 492.679 kb on - strand, within TX73_002310at 492.721 kb on - strand, within TX73_002310at 492.732 kb on - strand, within TX73_002310at 492.738 kb on - strand, within TX73_002310at 492.739 kb on + strand, within TX73_002310at 492.745 kb on - strand, within TX73_002310

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Per-strain Table

Position Strand Gene LocusTag Fraction Citraconic (C); anaerobic
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489,163 - TX73_002295 0.66 -1.4
489,197 + TX73_002295 0.71 +0.7
489,197 - TX73_002295 0.71 -0.1
489,205 + TX73_002295 0.72 -1.8
489,227 + TX73_002295 0.75 -2.5
489,288 + TX73_002295 0.83 -0.9
489,296 - TX73_002295 0.84 -0.7
489,313 + TX73_002295 0.86 -1.1
489,343 - +0.1
489,343 - -1.1
489,356 - +0.2
489,358 + -0.4
489,373 + -0.3
489,381 - +0.5
489,432 + +0.1
489,432 + -0.7
489,440 - +0.1
489,440 - -0.3
489,446 + +0.3
489,451 + +1.5
489,451 + -0.3
489,459 - +0.7
489,459 - -1.2
489,631 + TX73_002300 0.21 -0.7
489,643 + TX73_002300 0.24 -1.8
489,643 + TX73_002300 0.24 -0.1
489,699 + TX73_002300 0.37 -0.0
489,710 - TX73_002300 0.40 -1.6
489,722 - TX73_002300 0.43 -0.0
489,726 - TX73_002300 0.44 -0.5
489,738 - TX73_002300 0.47 -1.1
489,767 + TX73_002300 0.54 +0.3
489,767 + TX73_002300 0.54 +2.4
489,787 + TX73_002300 0.58 -3.0
489,795 - TX73_002300 0.60 -0.9
489,810 + TX73_002300 0.64 -0.9
489,849 + TX73_002300 0.73 -1.8
489,882 + TX73_002300 0.81 -1.5
489,890 - TX73_002300 0.83 -1.1
489,947 - +0.9
489,970 + +1.4
489,972 + -1.1
489,972 + -1.5
489,972 + +3.4
489,980 - -0.1
489,980 - -2.0
489,995 + +0.4
489,995 + -0.1
489,997 - +0.5
490,010 + -0.2
490,133 - +0.2
491,138 + TX73_002305 0.61 +0.0
491,146 - TX73_002305 0.61 -0.0
491,146 - TX73_002305 0.61 +0.9
491,146 - TX73_002305 0.61 +1.0
491,146 - TX73_002305 0.61 +0.8
491,146 - TX73_002305 0.61 -0.6
491,146 - TX73_002305 0.61 +0.9
491,161 - TX73_002305 0.62 -0.6
491,719 - +0.9
491,749 + -0.8
491,749 + -0.0
491,782 + +1.1
491,798 + +0.8
491,805 - +0.4
491,806 - +0.2
491,832 - -0.2
491,842 + +1.6
491,850 - +0.4
491,857 + +1.0
491,865 - +0.8
491,907 - TX73_002310 0.12 +0.2
491,931 - TX73_002310 0.14 +0.9
491,934 + TX73_002310 0.14 +1.1
491,952 - TX73_002310 0.16 +0.1
491,952 - TX73_002310 0.16 -0.1
491,979 + TX73_002310 0.18 +0.6
492,056 - TX73_002310 0.25 +2.9
492,056 - TX73_002310 0.25 +1.6
492,101 + TX73_002310 0.29 +0.2
492,101 + TX73_002310 0.29 -0.2
492,101 + TX73_002310 0.29 +0.6
492,106 + TX73_002310 0.29 -0.6
492,109 - TX73_002310 0.30 +0.9
492,110 - TX73_002310 0.30 +0.7
492,177 - TX73_002310 0.36 +1.1
492,227 + TX73_002310 0.40 +1.4
492,235 - TX73_002310 0.41 +0.8
492,271 + TX73_002310 0.44 +0.9
492,288 - TX73_002310 0.45 -0.6
492,288 - TX73_002310 0.45 +0.9
492,299 - TX73_002310 0.46 +1.8
492,331 + TX73_002310 0.49 -0.3
492,336 - TX73_002310 0.49 +0.5
492,339 - TX73_002310 0.50 +1.0
492,339 - TX73_002310 0.50 -0.7
492,375 + TX73_002310 0.53 +0.5
492,383 - TX73_002310 0.54 +1.2
492,395 + TX73_002310 0.55 -0.3
492,418 + TX73_002310 0.57 +1.4
492,423 - TX73_002310 0.57 +0.6
492,433 + TX73_002310 0.58 +0.5
492,448 + TX73_002310 0.59 -0.6
492,448 + TX73_002310 0.59 +0.9
492,448 + TX73_002310 0.59 +1.1
492,456 - TX73_002310 0.60 +1.7
492,456 - TX73_002310 0.60 +0.6
492,473 + TX73_002310 0.61 -0.0
492,494 - TX73_002310 0.63 +1.3
492,494 - TX73_002310 0.63 +0.5
492,530 - TX73_002310 0.66 +0.4
492,537 - TX73_002310 0.67 +0.8
492,557 + TX73_002310 0.69 +1.6
492,557 + TX73_002310 0.69 +0.4
492,561 - TX73_002310 0.69 +1.1
492,575 - TX73_002310 0.70 +1.4
492,621 + TX73_002310 0.74 +1.0
492,651 - TX73_002310 0.77 +0.6
492,666 + TX73_002310 0.78 +1.0
492,669 - TX73_002310 0.79 +0.5
492,679 - TX73_002310 0.79 +0.6
492,721 - TX73_002310 0.83 +1.6
492,732 - TX73_002310 0.84 +0.9
492,738 - TX73_002310 0.85 +0.2
492,739 + TX73_002310 0.85 +0.1
492,745 - TX73_002310 0.85 +0.2

Or see this region's nucleotide sequence