Experiment: Butyric Acid (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002175 and TX73_002180 are separated by 120 nucleotides TX73_002180 and TX73_002185 are separated by 182 nucleotides TX73_002185 and TX73_002190 are separated by 136 nucleotides
TX73_002175: TX73_002175 - glutamine amidotransferase, at 460,131 to 460,928
_002175
TX73_002180: TX73_002180 - SDR family oxidoreductase, at 461,049 to 461,828
_002180
TX73_002185: TX73_002185 - TerB family tellurite resistance protein, at 462,011 to 462,538
_002185
TX73_002190: TX73_002190 - cytochrome P450, at 462,675 to 464,060
_002190
Position (kb) 461
462 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.051 kb on - strand at 460.056 kb on - strand at 460.093 kb on + strand at 460.095 kb on + strand at 460.136 kb on - strand at 460.136 kb on - strand at 460.230 kb on + strand, within TX73_002175 at 460.230 kb on + strand, within TX73_002175 at 460.238 kb on - strand, within TX73_002175 at 460.306 kb on - strand, within TX73_002175 at 460.345 kb on - strand, within TX73_002175 at 460.349 kb on + strand, within TX73_002175 at 460.364 kb on - strand, within TX73_002175 at 460.370 kb on - strand, within TX73_002175 at 460.504 kb on - strand, within TX73_002175 at 460.529 kb on + strand, within TX73_002175 at 460.628 kb on - strand, within TX73_002175 at 460.662 kb on + strand, within TX73_002175 at 460.663 kb on + strand, within TX73_002175 at 460.699 kb on + strand, within TX73_002175 at 460.706 kb on - strand, within TX73_002175 at 460.707 kb on - strand, within TX73_002175 at 460.709 kb on - strand, within TX73_002175 at 460.775 kb on + strand, within TX73_002175 at 460.796 kb on + strand, within TX73_002175 at 460.804 kb on - strand, within TX73_002175 at 460.929 kb on + strand at 460.929 kb on + strand at 460.932 kb on - strand at 460.932 kb on - strand at 460.934 kb on + strand at 460.934 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.939 kb on + strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.947 kb on - strand at 460.962 kb on - strand at 460.970 kb on + strand at 461.005 kb on + strand at 461.066 kb on - strand at 461.071 kb on - strand at 461.135 kb on + strand, within TX73_002180 at 461.135 kb on + strand, within TX73_002180 at 461.143 kb on - strand, within TX73_002180 at 461.153 kb on - strand, within TX73_002180 at 461.155 kb on + strand, within TX73_002180 at 461.174 kb on + strand, within TX73_002180 at 461.174 kb on + strand, within TX73_002180 at 461.174 kb on + strand, within TX73_002180 at 461.179 kb on + strand, within TX73_002180 at 461.182 kb on - strand, within TX73_002180 at 461.182 kb on - strand, within TX73_002180 at 461.199 kb on - strand, within TX73_002180 at 461.200 kb on - strand, within TX73_002180 at 461.207 kb on - strand, within TX73_002180 at 461.209 kb on - strand, within TX73_002180 at 461.212 kb on + strand, within TX73_002180 at 461.212 kb on + strand, within TX73_002180 at 461.214 kb on + strand, within TX73_002180 at 461.225 kb on - strand, within TX73_002180 at 461.229 kb on + strand, within TX73_002180 at 461.232 kb on - strand, within TX73_002180 at 461.237 kb on - strand, within TX73_002180 at 461.237 kb on - strand, within TX73_002180 at 461.281 kb on - strand, within TX73_002180 at 461.287 kb on - strand, within TX73_002180 at 461.287 kb on - strand, within TX73_002180 at 461.287 kb on - strand, within TX73_002180 at 461.292 kb on - strand, within TX73_002180 at 461.297 kb on - strand, within TX73_002180 at 461.338 kb on + strand, within TX73_002180 at 461.351 kb on + strand, within TX73_002180 at 461.359 kb on - strand, within TX73_002180 at 461.373 kb on + strand, within TX73_002180 at 461.387 kb on - strand, within TX73_002180 at 461.427 kb on - strand, within TX73_002180 at 461.427 kb on - strand, within TX73_002180 at 461.429 kb on - strand, within TX73_002180 at 461.498 kb on - strand, within TX73_002180 at 461.534 kb on - strand, within TX73_002180 at 461.552 kb on - strand, within TX73_002180 at 461.560 kb on - strand, within TX73_002180 at 461.575 kb on + strand, within TX73_002180 at 461.577 kb on + strand, within TX73_002180 at 461.606 kb on + strand, within TX73_002180 at 461.629 kb on - strand, within TX73_002180 at 461.643 kb on - strand, within TX73_002180 at 461.666 kb on + strand, within TX73_002180 at 461.666 kb on + strand, within TX73_002180 at 461.666 kb on + strand, within TX73_002180 at 461.680 kb on - strand, within TX73_002180 at 461.688 kb on + strand, within TX73_002180 at 461.691 kb on - strand, within TX73_002180 at 461.696 kb on - strand, within TX73_002180 at 461.696 kb on - strand, within TX73_002180 at 461.782 kb on - strand at 461.792 kb on - strand at 461.799 kb on - strand at 461.810 kb on + strand at 461.875 kb on - strand at 461.875 kb on - strand at 461.880 kb on - strand at 461.882 kb on + strand at 461.883 kb on + strand at 461.885 kb on - strand at 461.885 kb on - strand at 461.885 kb on - strand at 461.904 kb on + strand at 461.912 kb on - strand at 461.913 kb on + strand at 461.917 kb on - strand at 461.920 kb on - strand at 461.921 kb on - strand at 461.930 kb on + strand at 461.953 kb on + strand at 461.957 kb on + strand at 461.960 kb on + strand at 461.960 kb on + strand at 461.960 kb on - strand at 461.965 kb on + strand at 461.968 kb on - strand at 461.968 kb on - strand at 461.970 kb on + strand at 461.975 kb on + strand at 461.992 kb on + strand at 462.029 kb on - strand at 462.039 kb on - strand at 462.041 kb on + strand at 462.049 kb on - strand at 462.051 kb on + strand at 462.051 kb on + strand at 462.056 kb on + strand at 462.059 kb on - strand at 462.069 kb on - strand, within TX73_002185 at 462.074 kb on - strand, within TX73_002185 at 462.097 kb on - strand, within TX73_002185 at 462.109 kb on + strand, within TX73_002185 at 462.109 kb on + strand, within TX73_002185 at 462.111 kb on - strand, within TX73_002185 at 462.111 kb on - strand, within TX73_002185 at 462.117 kb on - strand, within TX73_002185 at 462.117 kb on - strand, within TX73_002185 at 462.157 kb on + strand, within TX73_002185 at 462.160 kb on - strand, within TX73_002185 at 462.169 kb on + strand, within TX73_002185 at 462.169 kb on + strand, within TX73_002185 at 462.170 kb on - strand, within TX73_002185 at 462.176 kb on + strand, within TX73_002185 at 462.178 kb on + strand, within TX73_002185 at 462.184 kb on - strand, within TX73_002185 at 462.195 kb on + strand, within TX73_002185 at 462.195 kb on + strand, within TX73_002185 at 462.195 kb on + strand, within TX73_002185 at 462.203 kb on - strand, within TX73_002185 at 462.225 kb on + strand, within TX73_002185 at 462.235 kb on + strand, within TX73_002185 at 462.252 kb on + strand, within TX73_002185 at 462.263 kb on - strand, within TX73_002185 at 462.297 kb on + strand, within TX73_002185 at 462.299 kb on - strand, within TX73_002185 at 462.305 kb on - strand, within TX73_002185 at 462.352 kb on - strand, within TX73_002185 at 462.359 kb on - strand, within TX73_002185 at 462.413 kb on + strand, within TX73_002185 at 462.428 kb on + strand, within TX73_002185 at 462.436 kb on - strand, within TX73_002185 at 462.466 kb on + strand, within TX73_002185 at 462.481 kb on + strand, within TX73_002185 at 462.481 kb on + strand, within TX73_002185 at 462.489 kb on - strand at 462.524 kb on - strand at 462.526 kb on + strand at 462.543 kb on - strand at 462.567 kb on - strand at 462.574 kb on + strand at 462.574 kb on + strand at 462.582 kb on - strand at 462.590 kb on - strand at 462.595 kb on - strand at 462.599 kb on + strand at 462.599 kb on + strand at 462.612 kb on - strand at 462.655 kb on + strand at 462.655 kb on + strand at 462.655 kb on + strand at 462.656 kb on + strand at 462.664 kb on - strand at 462.671 kb on + strand at 462.675 kb on - strand at 462.679 kb on - strand at 462.679 kb on - strand at 462.679 kb on - strand at 462.688 kb on + strand at 462.688 kb on + strand at 462.689 kb on + strand at 462.696 kb on - strand at 462.696 kb on - strand at 462.696 kb on - strand at 462.696 kb on - strand at 462.716 kb on + strand at 462.751 kb on + strand at 462.751 kb on + strand at 462.751 kb on + strand at 462.751 kb on + strand at 462.753 kb on + strand at 462.754 kb on - strand at 462.759 kb on - strand at 462.769 kb on - strand at 462.794 kb on + strand at 462.795 kb on + strand at 462.795 kb on + strand at 462.795 kb on + strand at 462.800 kb on + strand at 462.802 kb on - strand at 462.805 kb on + strand at 462.813 kb on - strand at 462.816 kb on + strand, within TX73_002190 at 462.823 kb on - strand, within TX73_002190 at 462.823 kb on - strand, within TX73_002190
Per-strain Table
Position Strand Gene LocusTag Fraction Butyric Acid (C); anaerobic remove 460,051 - +0.7 460,056 - +1.0 460,093 + +1.4 460,095 + -1.5 460,136 - +0.6 460,136 - +0.3 460,230 + TX73_002175 0.12 -0.0 460,230 + TX73_002175 0.12 +0.9 460,238 - TX73_002175 0.13 -0.6 460,306 - TX73_002175 0.22 +0.2 460,345 - TX73_002175 0.27 +0.1 460,349 + TX73_002175 0.27 +0.3 460,364 - TX73_002175 0.29 +1.3 460,370 - TX73_002175 0.30 +0.2 460,504 - TX73_002175 0.47 +0.4 460,529 + TX73_002175 0.50 -1.0 460,628 - TX73_002175 0.62 +1.1 460,662 + TX73_002175 0.67 -0.2 460,663 + TX73_002175 0.67 +0.0 460,699 + TX73_002175 0.71 +0.6 460,706 - TX73_002175 0.72 -0.2 460,707 - TX73_002175 0.72 +1.0 460,709 - TX73_002175 0.72 +0.0 460,775 + TX73_002175 0.81 +0.5 460,796 + TX73_002175 0.83 -0.3 460,804 - TX73_002175 0.84 -0.1 460,929 + -0.3 460,929 + -0.2 460,932 - +0.9 460,932 - -0.9 460,934 + -1.0 460,934 + +0.6 460,939 + +0.2 460,939 + +0.2 460,939 + -0.3 460,939 + -0.8 460,939 + +0.6 460,939 + +0.6 460,939 + +1.0 460,939 + -0.3 460,939 + -0.3 460,939 + +0.3 460,939 + +0.4 460,939 + +0.1 460,939 + -0.6 460,939 + +0.2 460,939 + +0.4 460,939 + -0.4 460,947 - -0.3 460,947 - +1.5 460,947 - +0.7 460,947 - +0.4 460,947 - -0.3 460,947 - -0.4 460,947 - +0.5 460,947 - -0.2 460,947 - -0.0 460,947 - +0.2 460,947 - -0.0 460,962 - +1.2 460,970 + -0.0 461,005 + -0.7 461,066 - +0.1 461,071 - -0.6 461,135 + TX73_002180 0.11 +0.1 461,135 + TX73_002180 0.11 -0.0 461,143 - TX73_002180 0.12 -0.1 461,153 - TX73_002180 0.13 -0.9 461,155 + TX73_002180 0.14 +0.1 461,174 + TX73_002180 0.16 -0.6 461,174 + TX73_002180 0.16 -0.5 461,174 + TX73_002180 0.16 -0.7 461,179 + TX73_002180 0.17 -0.4 461,182 - TX73_002180 0.17 -2.3 461,182 - TX73_002180 0.17 -0.9 461,199 - TX73_002180 0.19 -0.3 461,200 - TX73_002180 0.19 -0.7 461,207 - TX73_002180 0.20 -0.0 461,209 - TX73_002180 0.21 +0.4 461,212 + TX73_002180 0.21 +0.8 461,212 + TX73_002180 0.21 +0.6 461,214 + TX73_002180 0.21 +0.2 461,225 - TX73_002180 0.23 +0.4 461,229 + TX73_002180 0.23 -0.2 461,232 - TX73_002180 0.23 -0.4 461,237 - TX73_002180 0.24 -0.2 461,237 - TX73_002180 0.24 -1.1 461,281 - TX73_002180 0.30 -2.4 461,287 - TX73_002180 0.31 +1.6 461,287 - TX73_002180 0.31 +0.2 461,287 - TX73_002180 0.31 -1.2 461,292 - TX73_002180 0.31 +0.1 461,297 - TX73_002180 0.32 -0.2 461,338 + TX73_002180 0.37 -1.4 461,351 + TX73_002180 0.39 +0.6 461,359 - TX73_002180 0.40 -0.4 461,373 + TX73_002180 0.42 +0.6 461,387 - TX73_002180 0.43 -0.0 461,427 - TX73_002180 0.48 -1.8 461,427 - TX73_002180 0.48 -0.7 461,429 - TX73_002180 0.49 -0.6 461,498 - TX73_002180 0.58 +0.1 461,534 - TX73_002180 0.62 -1.3 461,552 - TX73_002180 0.64 +0.5 461,560 - TX73_002180 0.66 -1.0 461,575 + TX73_002180 0.67 -0.3 461,577 + TX73_002180 0.68 +0.2 461,606 + TX73_002180 0.71 +1.2 461,629 - TX73_002180 0.74 +0.3 461,643 - TX73_002180 0.76 +0.0 461,666 + TX73_002180 0.79 +0.7 461,666 + TX73_002180 0.79 +0.1 461,666 + TX73_002180 0.79 -0.0 461,680 - TX73_002180 0.81 +0.5 461,688 + TX73_002180 0.82 +0.6 461,691 - TX73_002180 0.82 -0.2 461,696 - TX73_002180 0.83 -0.4 461,696 - TX73_002180 0.83 -1.5 461,782 - -0.0 461,792 - +0.3 461,799 - -0.2 461,810 + +0.3 461,875 - -0.3 461,875 - -0.0 461,880 - +0.1 461,882 + +0.6 461,883 + +0.3 461,885 - +0.8 461,885 - -0.0 461,885 - -0.2 461,904 + -0.7 461,912 - +0.4 461,913 + +0.6 461,917 - -1.0 461,920 - +0.6 461,921 - +0.3 461,930 + +0.6 461,953 + -0.0 461,957 + +0.2 461,960 + +0.5 461,960 + -0.5 461,960 - -0.1 461,965 + -0.5 461,968 - +0.4 461,968 - -0.5 461,970 + -0.4 461,975 + +0.9 461,992 + +0.6 462,029 - +0.7 462,039 - +1.3 462,041 + +0.2 462,049 - +0.5 462,051 + -0.2 462,051 + +0.5 462,056 + +0.1 462,059 - +0.0 462,069 - TX73_002185 0.11 +0.7 462,074 - TX73_002185 0.12 -1.2 462,097 - TX73_002185 0.16 -0.0 462,109 + TX73_002185 0.19 +0.6 462,109 + TX73_002185 0.19 +0.3 462,111 - TX73_002185 0.19 +0.2 462,111 - TX73_002185 0.19 -0.7 462,117 - TX73_002185 0.20 +0.8 462,117 - TX73_002185 0.20 -0.2 462,157 + TX73_002185 0.28 +0.7 462,160 - TX73_002185 0.28 +0.0 462,169 + TX73_002185 0.30 +0.5 462,169 + TX73_002185 0.30 +1.4 462,170 - TX73_002185 0.30 -0.9 462,176 + TX73_002185 0.31 +1.0 462,178 + TX73_002185 0.32 -0.7 462,184 - TX73_002185 0.33 +0.0 462,195 + TX73_002185 0.35 -0.3 462,195 + TX73_002185 0.35 -0.1 462,195 + TX73_002185 0.35 +0.2 462,203 - TX73_002185 0.36 +2.0 462,225 + TX73_002185 0.41 -1.2 462,235 + TX73_002185 0.42 -0.1 462,252 + TX73_002185 0.46 +0.3 462,263 - TX73_002185 0.48 +0.7 462,297 + TX73_002185 0.54 +0.7 462,299 - TX73_002185 0.55 +0.2 462,305 - TX73_002185 0.56 -0.7 462,352 - TX73_002185 0.65 +0.0 462,359 - TX73_002185 0.66 -0.3 462,413 + TX73_002185 0.76 -1.2 462,428 + TX73_002185 0.79 -0.3 462,436 - TX73_002185 0.80 -0.8 462,466 + TX73_002185 0.86 +0.8 462,481 + TX73_002185 0.89 +0.2 462,481 + TX73_002185 0.89 -0.2 462,489 - -0.2 462,524 - -0.5 462,526 + +0.0 462,543 - +0.5 462,567 - +0.2 462,574 + +1.2 462,574 + +0.1 462,582 - +0.4 462,590 - -0.1 462,595 - -0.5 462,599 + +0.2 462,599 + +1.3 462,612 - +0.5 462,655 + -0.3 462,655 + -0.4 462,655 + +0.7 462,656 + -0.0 462,664 - -0.1 462,671 + +0.1 462,675 - +0.3 462,679 - -0.0 462,679 - -0.0 462,679 - -1.1 462,688 + +0.9 462,688 + -0.3 462,689 + +0.7 462,696 - +0.6 462,696 - -0.8 462,696 - -0.6 462,696 - +0.6 462,716 + +0.7 462,751 + +0.7 462,751 + -1.6 462,751 + +0.9 462,751 + +0.7 462,753 + -0.2 462,754 - -0.1 462,759 - +1.0 462,769 - +0.7 462,794 + +0.5 462,795 + -0.0 462,795 + +1.1 462,795 + +0.6 462,800 + -0.7 462,802 - +0.6 462,805 + -1.3 462,813 - +0.2 462,816 + TX73_002190 0.10 +0.1 462,823 - TX73_002190 0.11 -0.0 462,823 - TX73_002190 0.11 +0.7
Or see this region's nucleotide sequence