Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002960

Experiment: Butyric Acid (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002950 and TX73_002955 are separated by 155 nucleotidesTX73_002955 and TX73_002960 are separated by 125 nucleotidesTX73_002960 and TX73_002965 are separated by 91 nucleotides TX73_002950: TX73_002950 - VWA domain-containing protein, at 631,701 to 632,819 _002950 TX73_002955: TX73_002955 - MmcB family DNA repair protein, at 632,975 to 633,454 _002955 TX73_002960: TX73_002960 - ActR/PrrA/RegA family redox response regulator transcription factor, at 633,580 to 634,134 _002960 TX73_002965: TX73_002965 - ActS/PrrB/RegB family redox-sensitive histidine kinase, at 634,226 to 635,548 _002965 Position (kb) 633 634 635Strain fitness (log2 ratio) -2 -1 0 1 2 3at 632.591 kb on - strand, within TX73_002950at 632.667 kb on - strand, within TX73_002950at 632.686 kb on - strand, within TX73_002950at 632.696 kb on + strand, within TX73_002950at 632.704 kb on - strand, within TX73_002950at 632.787 kb on + strandat 632.790 kb on - strandat 632.790 kb on - strandat 632.795 kb on - strandat 632.826 kb on + strandat 632.837 kb on - strandat 632.841 kb on + strandat 632.841 kb on + strandat 632.854 kb on + strandat 632.869 kb on + strandat 632.916 kb on + strandat 632.921 kb on + strandat 632.921 kb on + strandat 632.926 kb on + strandat 632.929 kb on - strandat 632.936 kb on + strandat 632.958 kb on + strandat 632.964 kb on + strandat 632.998 kb on - strandat 633.032 kb on + strand, within TX73_002955at 633.032 kb on + strand, within TX73_002955at 633.037 kb on + strand, within TX73_002955at 633.071 kb on + strand, within TX73_002955at 633.085 kb on - strand, within TX73_002955at 633.085 kb on - strand, within TX73_002955at 633.125 kb on + strand, within TX73_002955at 633.135 kb on + strand, within TX73_002955at 633.162 kb on - strand, within TX73_002955at 633.162 kb on - strand, within TX73_002955at 633.169 kb on + strand, within TX73_002955at 633.169 kb on + strand, within TX73_002955at 633.253 kb on + strand, within TX73_002955at 633.253 kb on + strand, within TX73_002955at 633.254 kb on + strand, within TX73_002955at 633.259 kb on + strand, within TX73_002955at 633.284 kb on + strand, within TX73_002955at 633.289 kb on + strand, within TX73_002955at 633.298 kb on + strand, within TX73_002955at 633.323 kb on + strand, within TX73_002955at 633.328 kb on + strand, within TX73_002955at 633.328 kb on + strand, within TX73_002955at 633.331 kb on - strand, within TX73_002955at 633.351 kb on + strand, within TX73_002955at 633.374 kb on - strand, within TX73_002955at 633.392 kb on + strand, within TX73_002955at 633.399 kb on + strand, within TX73_002955at 633.405 kb on - strand, within TX73_002955at 633.470 kb on + strandat 633.498 kb on - strandat 633.540 kb on + strandat 633.571 kb on + strandat 633.571 kb on + strandat 633.571 kb on + strandat 633.618 kb on - strandat 633.623 kb on - strandat 633.655 kb on - strand, within TX73_002960at 633.716 kb on - strand, within TX73_002960at 633.763 kb on - strand, within TX73_002960at 633.770 kb on + strand, within TX73_002960at 633.794 kb on + strand, within TX73_002960at 633.797 kb on - strand, within TX73_002960at 633.802 kb on - strand, within TX73_002960at 633.802 kb on - strand, within TX73_002960at 633.853 kb on + strand, within TX73_002960at 633.873 kb on - strand, within TX73_002960at 633.899 kb on - strand, within TX73_002960at 633.969 kb on - strand, within TX73_002960at 634.043 kb on + strand, within TX73_002960at 634.051 kb on - strand, within TX73_002960at 634.136 kb on + strandat 634.136 kb on + strandat 634.144 kb on - strandat 634.144 kb on - strandat 634.144 kb on - strandat 634.144 kb on - strandat 634.171 kb on + strandat 634.176 kb on + strandat 634.200 kb on - strandat 634.207 kb on - strandat 634.214 kb on + strandat 634.227 kb on - strandat 634.270 kb on + strandat 634.346 kb on - strandat 634.349 kb on + strandat 634.357 kb on + strandat 634.357 kb on - strandat 634.358 kb on + strandat 634.366 kb on - strand, within TX73_002965at 634.366 kb on - strand, within TX73_002965at 634.367 kb on - strand, within TX73_002965at 634.375 kb on + strand, within TX73_002965at 634.382 kb on + strand, within TX73_002965at 634.386 kb on + strand, within TX73_002965at 634.419 kb on - strand, within TX73_002965at 634.435 kb on + strand, within TX73_002965at 634.443 kb on - strand, within TX73_002965at 634.470 kb on - strand, within TX73_002965at 634.515 kb on + strand, within TX73_002965at 634.568 kb on + strand, within TX73_002965at 634.576 kb on - strand, within TX73_002965at 634.589 kb on + strand, within TX73_002965at 634.597 kb on - strand, within TX73_002965at 634.602 kb on + strand, within TX73_002965at 634.602 kb on + strand, within TX73_002965at 634.615 kb on - strand, within TX73_002965at 634.634 kb on + strand, within TX73_002965at 634.644 kb on + strand, within TX73_002965at 634.678 kb on - strand, within TX73_002965at 634.678 kb on - strand, within TX73_002965at 634.722 kb on - strand, within TX73_002965at 634.750 kb on - strand, within TX73_002965at 634.776 kb on - strand, within TX73_002965at 634.778 kb on + strand, within TX73_002965at 634.781 kb on - strand, within TX73_002965at 634.806 kb on - strand, within TX73_002965at 634.807 kb on + strand, within TX73_002965at 634.833 kb on + strand, within TX73_002965at 634.860 kb on - strand, within TX73_002965at 634.923 kb on + strand, within TX73_002965at 634.925 kb on - strand, within TX73_002965at 634.930 kb on - strand, within TX73_002965at 634.999 kb on + strand, within TX73_002965at 634.999 kb on + strand, within TX73_002965at 635.007 kb on + strand, within TX73_002965at 635.007 kb on + strand, within TX73_002965at 635.007 kb on + strand, within TX73_002965at 635.007 kb on - strand, within TX73_002965at 635.015 kb on - strand, within TX73_002965at 635.015 kb on - strand, within TX73_002965at 635.015 kb on - strand, within TX73_002965at 635.015 kb on - strand, within TX73_002965at 635.061 kb on + strand, within TX73_002965at 635.061 kb on + strand, within TX73_002965at 635.067 kb on + strand, within TX73_002965at 635.097 kb on + strand, within TX73_002965at 635.097 kb on + strand, within TX73_002965at 635.097 kb on + strand, within TX73_002965at 635.105 kb on - strand, within TX73_002965at 635.116 kb on + strand, within TX73_002965at 635.116 kb on - strand, within TX73_002965

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Per-strain Table

Position Strand Gene LocusTag Fraction Butyric Acid (C); anaerobic
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632,591 - TX73_002950 0.80 -0.2
632,667 - TX73_002950 0.86 -0.1
632,686 - TX73_002950 0.88 -0.5
632,696 + TX73_002950 0.89 +0.2
632,704 - TX73_002950 0.90 +0.1
632,787 + -0.3
632,790 - +1.2
632,790 - +0.4
632,795 - -1.0
632,826 + +0.5
632,837 - +0.3
632,841 + +0.7
632,841 + -0.6
632,854 + -0.4
632,869 + +0.5
632,916 + -0.1
632,921 + -0.7
632,921 + -0.4
632,926 + -0.3
632,929 - -0.2
632,936 + +0.1
632,958 + +0.2
632,964 + -0.2
632,998 - -1.0
633,032 + TX73_002955 0.12 -0.3
633,032 + TX73_002955 0.12 +1.2
633,037 + TX73_002955 0.13 -0.5
633,071 + TX73_002955 0.20 +0.7
633,085 - TX73_002955 0.23 -0.4
633,085 - TX73_002955 0.23 -0.3
633,125 + TX73_002955 0.31 -1.2
633,135 + TX73_002955 0.33 +0.0
633,162 - TX73_002955 0.39 +0.1
633,162 - TX73_002955 0.39 +0.4
633,169 + TX73_002955 0.40 -0.8
633,169 + TX73_002955 0.40 +0.2
633,253 + TX73_002955 0.58 +0.9
633,253 + TX73_002955 0.58 -0.1
633,254 + TX73_002955 0.58 -0.2
633,259 + TX73_002955 0.59 -0.1
633,284 + TX73_002955 0.64 -0.1
633,289 + TX73_002955 0.65 +1.3
633,298 + TX73_002955 0.67 +0.4
633,323 + TX73_002955 0.72 +0.1
633,328 + TX73_002955 0.74 -0.5
633,328 + TX73_002955 0.74 +0.4
633,331 - TX73_002955 0.74 +0.6
633,351 + TX73_002955 0.78 +2.3
633,374 - TX73_002955 0.83 -0.5
633,392 + TX73_002955 0.87 +1.3
633,399 + TX73_002955 0.88 +0.4
633,405 - TX73_002955 0.90 +0.3
633,470 + +0.6
633,498 - +0.1
633,540 + -0.8
633,571 + +1.4
633,571 + -1.6
633,571 + +0.9
633,618 - +0.8
633,623 - -1.0
633,655 - TX73_002960 0.14 +0.9
633,716 - TX73_002960 0.25 +1.0
633,763 - TX73_002960 0.33 -1.9
633,770 + TX73_002960 0.34 -0.7
633,794 + TX73_002960 0.39 +0.1
633,797 - TX73_002960 0.39 +1.1
633,802 - TX73_002960 0.40 +0.2
633,802 - TX73_002960 0.40 +1.0
633,853 + TX73_002960 0.49 +0.4
633,873 - TX73_002960 0.53 -1.3
633,899 - TX73_002960 0.57 -1.6
633,969 - TX73_002960 0.70 +1.1
634,043 + TX73_002960 0.83 +1.9
634,051 - TX73_002960 0.85 +1.5
634,136 + -0.1
634,136 + +0.6
634,144 - +0.6
634,144 - +0.5
634,144 - +0.3
634,144 - -0.3
634,171 + -0.0
634,176 + -1.0
634,200 - -0.3
634,207 - +0.5
634,214 + -0.2
634,227 - -0.9
634,270 + -0.1
634,346 - +0.2
634,349 + -0.0
634,357 + -1.1
634,357 - +2.0
634,358 + +0.5
634,366 - TX73_002965 0.11 +0.1
634,366 - TX73_002965 0.11 -0.1
634,367 - TX73_002965 0.11 +0.2
634,375 + TX73_002965 0.11 -0.8
634,382 + TX73_002965 0.12 -0.5
634,386 + TX73_002965 0.12 +0.5
634,419 - TX73_002965 0.15 +0.9
634,435 + TX73_002965 0.16 +1.6
634,443 - TX73_002965 0.16 -0.2
634,470 - TX73_002965 0.18 +0.9
634,515 + TX73_002965 0.22 +0.3
634,568 + TX73_002965 0.26 +2.0
634,576 - TX73_002965 0.26 +0.8
634,589 + TX73_002965 0.27 +1.3
634,597 - TX73_002965 0.28 +0.0
634,602 + TX73_002965 0.28 -0.7
634,602 + TX73_002965 0.28 +0.8
634,615 - TX73_002965 0.29 +0.5
634,634 + TX73_002965 0.31 +1.1
634,644 + TX73_002965 0.32 -1.3
634,678 - TX73_002965 0.34 -0.8
634,678 - TX73_002965 0.34 +1.4
634,722 - TX73_002965 0.37 +1.2
634,750 - TX73_002965 0.40 +0.1
634,776 - TX73_002965 0.42 +0.3
634,778 + TX73_002965 0.42 +0.7
634,781 - TX73_002965 0.42 +3.1
634,806 - TX73_002965 0.44 +1.2
634,807 + TX73_002965 0.44 +1.6
634,833 + TX73_002965 0.46 +1.1
634,860 - TX73_002965 0.48 -0.7
634,923 + TX73_002965 0.53 +0.6
634,925 - TX73_002965 0.53 +0.7
634,930 - TX73_002965 0.53 +2.0
634,999 + TX73_002965 0.58 +1.1
634,999 + TX73_002965 0.58 +2.0
635,007 + TX73_002965 0.59 -0.0
635,007 + TX73_002965 0.59 -1.5
635,007 + TX73_002965 0.59 +0.3
635,007 - TX73_002965 0.59 +1.0
635,015 - TX73_002965 0.60 +1.4
635,015 - TX73_002965 0.60 +0.6
635,015 - TX73_002965 0.60 -0.0
635,015 - TX73_002965 0.60 +0.4
635,061 + TX73_002965 0.63 -0.5
635,061 + TX73_002965 0.63 +0.5
635,067 + TX73_002965 0.64 -1.3
635,097 + TX73_002965 0.66 +1.7
635,097 + TX73_002965 0.66 +0.1
635,097 + TX73_002965 0.66 +0.2
635,105 - TX73_002965 0.66 +1.7
635,116 + TX73_002965 0.67 +0.8
635,116 - TX73_002965 0.67 -0.5

Or see this region's nucleotide sequence