Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011080

Experiment: Butyric Acid (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_011075 and TX73_011080 are separated by 95 nucleotidesTX73_011080 and TX73_011085 are separated by 230 nucleotides TX73_011075: TX73_011075 - hypothetical protein, at 2,415,376 to 2,416,821 _011075 TX73_011080: TX73_011080 - serine hydrolase, at 2,416,917 to 2,418,185 _011080 TX73_011085: TX73_011085 - intradiol ring-cleavage dioxygenase, at 2,418,416 to 2,419,321 _011085 Position (kb) 2416 2417 2418 2419Strain fitness (log2 ratio) -2 -1 0 1 2at 2415.919 kb on + strand, within TX73_011075at 2415.919 kb on + strand, within TX73_011075at 2415.956 kb on - strand, within TX73_011075at 2415.981 kb on + strand, within TX73_011075at 2415.994 kb on - strand, within TX73_011075at 2415.995 kb on - strand, within TX73_011075at 2416.025 kb on + strand, within TX73_011075at 2416.028 kb on - strand, within TX73_011075at 2416.028 kb on - strand, within TX73_011075at 2416.064 kb on - strand, within TX73_011075at 2416.069 kb on + strand, within TX73_011075at 2416.074 kb on + strand, within TX73_011075at 2416.077 kb on - strand, within TX73_011075at 2416.077 kb on - strand, within TX73_011075at 2416.077 kb on - strand, within TX73_011075at 2416.093 kb on - strand, within TX73_011075at 2416.183 kb on - strand, within TX73_011075at 2416.200 kb on + strand, within TX73_011075at 2416.218 kb on - strand, within TX73_011075at 2416.223 kb on + strand, within TX73_011075at 2416.228 kb on + strand, within TX73_011075at 2416.266 kb on + strand, within TX73_011075at 2416.295 kb on + strand, within TX73_011075at 2416.303 kb on - strand, within TX73_011075at 2416.346 kb on - strand, within TX73_011075at 2416.429 kb on + strand, within TX73_011075at 2416.479 kb on - strand, within TX73_011075at 2416.578 kb on - strand, within TX73_011075at 2416.779 kb on + strandat 2416.779 kb on + strandat 2416.780 kb on - strandat 2416.787 kb on - strandat 2416.787 kb on - strandat 2416.844 kb on - strandat 2416.887 kb on - strandat 2416.889 kb on + strandat 2416.944 kb on + strandat 2416.946 kb on + strandat 2416.946 kb on + strandat 2416.949 kb on - strandat 2416.970 kb on + strandat 2416.989 kb on - strandat 2416.998 kb on - strandat 2417.002 kb on + strandat 2417.046 kb on - strand, within TX73_011080at 2417.101 kb on - strand, within TX73_011080at 2417.239 kb on - strand, within TX73_011080at 2417.278 kb on + strand, within TX73_011080at 2417.351 kb on + strand, within TX73_011080at 2417.619 kb on - strand, within TX73_011080at 2417.722 kb on + strand, within TX73_011080at 2417.722 kb on + strand, within TX73_011080at 2417.727 kb on + strand, within TX73_011080at 2417.727 kb on + strand, within TX73_011080at 2417.727 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.732 kb on + strand, within TX73_011080at 2417.735 kb on - strand, within TX73_011080at 2417.740 kb on - strand, within TX73_011080at 2417.740 kb on - strand, within TX73_011080at 2417.740 kb on - strand, within TX73_011080at 2417.812 kb on + strand, within TX73_011080at 2417.828 kb on + strand, within TX73_011080at 2417.881 kb on - strand, within TX73_011080at 2417.884 kb on + strand, within TX73_011080at 2417.892 kb on - strand, within TX73_011080at 2417.906 kb on + strand, within TX73_011080at 2418.094 kb on + strandat 2418.119 kb on + strandat 2418.127 kb on - strandat 2418.156 kb on + strandat 2418.164 kb on - strandat 2418.166 kb on + strandat 2418.195 kb on + strandat 2418.201 kb on - strandat 2418.201 kb on - strandat 2418.203 kb on - strandat 2418.224 kb on + strandat 2418.232 kb on - strandat 2418.280 kb on + strandat 2418.290 kb on + strandat 2418.376 kb on + strandat 2418.412 kb on + strandat 2418.420 kb on - strandat 2418.544 kb on + strand, within TX73_011085at 2418.545 kb on + strand, within TX73_011085at 2418.553 kb on - strand, within TX73_011085at 2418.553 kb on - strand, within TX73_011085at 2418.553 kb on - strand, within TX73_011085at 2418.596 kb on + strand, within TX73_011085at 2418.596 kb on + strand, within TX73_011085at 2418.596 kb on + strand, within TX73_011085at 2418.604 kb on - strand, within TX73_011085at 2418.604 kb on - strand, within TX73_011085at 2418.672 kb on + strand, within TX73_011085at 2418.724 kb on + strand, within TX73_011085at 2418.724 kb on + strand, within TX73_011085at 2418.801 kb on - strand, within TX73_011085at 2418.816 kb on - strand, within TX73_011085at 2418.919 kb on - strand, within TX73_011085at 2418.924 kb on - strand, within TX73_011085at 2418.948 kb on + strand, within TX73_011085at 2418.957 kb on + strand, within TX73_011085at 2418.957 kb on + strand, within TX73_011085at 2418.967 kb on + strand, within TX73_011085at 2418.980 kb on + strand, within TX73_011085at 2419.001 kb on - strand, within TX73_011085at 2419.022 kb on + strand, within TX73_011085at 2419.027 kb on + strand, within TX73_011085at 2419.162 kb on + strand, within TX73_011085

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Per-strain Table

Position Strand Gene LocusTag Fraction Butyric Acid (C); anaerobic
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2,415,919 + TX73_011075 0.38 -0.6
2,415,919 + TX73_011075 0.38 -1.0
2,415,956 - TX73_011075 0.40 -1.2
2,415,981 + TX73_011075 0.42 +0.0
2,415,994 - TX73_011075 0.43 -1.0
2,415,995 - TX73_011075 0.43 -0.4
2,416,025 + TX73_011075 0.45 +0.3
2,416,028 - TX73_011075 0.45 -0.8
2,416,028 - TX73_011075 0.45 +0.2
2,416,064 - TX73_011075 0.48 +0.2
2,416,069 + TX73_011075 0.48 +0.0
2,416,074 + TX73_011075 0.48 -0.8
2,416,077 - TX73_011075 0.48 -0.3
2,416,077 - TX73_011075 0.48 +0.1
2,416,077 - TX73_011075 0.48 +0.4
2,416,093 - TX73_011075 0.50 +0.2
2,416,183 - TX73_011075 0.56 +0.7
2,416,200 + TX73_011075 0.57 -0.4
2,416,218 - TX73_011075 0.58 +0.5
2,416,223 + TX73_011075 0.59 +1.0
2,416,228 + TX73_011075 0.59 +1.6
2,416,266 + TX73_011075 0.62 +0.1
2,416,295 + TX73_011075 0.64 -0.2
2,416,303 - TX73_011075 0.64 +1.0
2,416,346 - TX73_011075 0.67 -2.5
2,416,429 + TX73_011075 0.73 +0.8
2,416,479 - TX73_011075 0.76 -0.0
2,416,578 - TX73_011075 0.83 -0.1
2,416,779 + +0.2
2,416,779 + +1.0
2,416,780 - +0.4
2,416,787 - +1.5
2,416,787 - +1.2
2,416,844 - -0.2
2,416,887 - +0.5
2,416,889 + -0.1
2,416,944 + +0.9
2,416,946 + +0.0
2,416,946 + +0.1
2,416,949 - -0.9
2,416,970 + +1.1
2,416,989 - +0.4
2,416,998 - +0.7
2,417,002 + +0.9
2,417,046 - TX73_011080 0.10 +2.5
2,417,101 - TX73_011080 0.14 +1.0
2,417,239 - TX73_011080 0.25 -0.5
2,417,278 + TX73_011080 0.28 -0.1
2,417,351 + TX73_011080 0.34 +1.4
2,417,619 - TX73_011080 0.55 +0.1
2,417,722 + TX73_011080 0.63 -0.4
2,417,722 + TX73_011080 0.63 -0.2
2,417,727 + TX73_011080 0.64 -1.5
2,417,727 + TX73_011080 0.64 -0.0
2,417,727 + TX73_011080 0.64 +0.4
2,417,732 + TX73_011080 0.64 -0.2
2,417,732 + TX73_011080 0.64 +1.3
2,417,732 + TX73_011080 0.64 -0.1
2,417,732 + TX73_011080 0.64 +0.6
2,417,732 + TX73_011080 0.64 -0.2
2,417,732 + TX73_011080 0.64 +0.6
2,417,732 + TX73_011080 0.64 +0.1
2,417,732 + TX73_011080 0.64 +0.0
2,417,732 + TX73_011080 0.64 -0.7
2,417,735 - TX73_011080 0.64 -0.3
2,417,740 - TX73_011080 0.65 -0.2
2,417,740 - TX73_011080 0.65 -0.7
2,417,740 - TX73_011080 0.65 +0.5
2,417,812 + TX73_011080 0.71 -1.7
2,417,828 + TX73_011080 0.72 -0.3
2,417,881 - TX73_011080 0.76 -0.7
2,417,884 + TX73_011080 0.76 -0.3
2,417,892 - TX73_011080 0.77 -0.0
2,417,906 + TX73_011080 0.78 +0.5
2,418,094 + -1.8
2,418,119 + +0.2
2,418,127 - +0.2
2,418,156 + +0.7
2,418,164 - +0.2
2,418,166 + -1.3
2,418,195 + -0.1
2,418,201 - +1.5
2,418,201 - -0.4
2,418,203 - +0.0
2,418,224 + +1.0
2,418,232 - +0.5
2,418,280 + +1.1
2,418,290 + -0.7
2,418,376 + +0.3
2,418,412 + -0.1
2,418,420 - +0.2
2,418,544 + TX73_011085 0.14 +0.3
2,418,545 + TX73_011085 0.14 -0.1
2,418,553 - TX73_011085 0.15 -1.1
2,418,553 - TX73_011085 0.15 +0.3
2,418,553 - TX73_011085 0.15 -0.6
2,418,596 + TX73_011085 0.20 +0.4
2,418,596 + TX73_011085 0.20 +0.4
2,418,596 + TX73_011085 0.20 +0.2
2,418,604 - TX73_011085 0.21 +0.4
2,418,604 - TX73_011085 0.21 -1.1
2,418,672 + TX73_011085 0.28 +0.2
2,418,724 + TX73_011085 0.34 +0.2
2,418,724 + TX73_011085 0.34 +0.0
2,418,801 - TX73_011085 0.42 +0.7
2,418,816 - TX73_011085 0.44 -0.2
2,418,919 - TX73_011085 0.56 -0.2
2,418,924 - TX73_011085 0.56 +1.1
2,418,948 + TX73_011085 0.59 -0.1
2,418,957 + TX73_011085 0.60 -1.5
2,418,957 + TX73_011085 0.60 +0.5
2,418,967 + TX73_011085 0.61 +0.3
2,418,980 + TX73_011085 0.62 +0.1
2,419,001 - TX73_011085 0.65 +0.5
2,419,022 + TX73_011085 0.67 +0.5
2,419,027 + TX73_011085 0.67 +0.2
2,419,162 + TX73_011085 0.82 +0.2

Or see this region's nucleotide sequence