Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002600

Experiment: Butyric Acid (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002590 and TX73_002595 are separated by 64 nucleotidesTX73_002595 and TX73_002600 are separated by 120 nucleotidesTX73_002600 and TX73_002605 are separated by 17 nucleotides TX73_002590: TX73_002590 - DedA family protein, at 554,831 to 555,448 _002590 TX73_002595: TX73_002595 - DnaJ domain-containing protein, at 555,513 to 556,157 _002595 TX73_002600: TX73_002600 - BolA family transcriptional regulator, at 556,278 to 556,547 _002600 TX73_002605: TX73_002605 - hemolysin family protein, at 556,565 to 557,926 _002605 Position (kb) 556 557Strain fitness (log2 ratio) -2 -1 0 1 2 3at 555.284 kb on - strand, within TX73_002590at 555.284 kb on - strand, within TX73_002590at 555.289 kb on - strand, within TX73_002590at 555.291 kb on - strand, within TX73_002590at 555.294 kb on - strand, within TX73_002590at 555.310 kb on + strand, within TX73_002590at 555.328 kb on - strand, within TX73_002590at 555.338 kb on + strand, within TX73_002590at 555.343 kb on + strand, within TX73_002590at 555.346 kb on - strand, within TX73_002590at 555.353 kb on + strand, within TX73_002590at 555.353 kb on + strand, within TX73_002590at 555.356 kb on + strand, within TX73_002590at 555.356 kb on + strand, within TX73_002590at 555.369 kb on - strand, within TX73_002590at 555.407 kb on + strandat 555.408 kb on + strandat 555.424 kb on + strandat 555.432 kb on - strandat 555.435 kb on - strandat 555.457 kb on + strandat 555.457 kb on + strandat 555.476 kb on - strandat 555.497 kb on + strandat 555.510 kb on - strandat 555.510 kb on - strandat 555.510 kb on - strandat 555.519 kb on + strandat 555.524 kb on - strandat 555.532 kb on - strandat 555.548 kb on - strandat 555.549 kb on - strandat 555.555 kb on - strandat 555.570 kb on + strandat 555.578 kb on - strand, within TX73_002595at 555.578 kb on - strand, within TX73_002595at 555.612 kb on - strand, within TX73_002595at 555.614 kb on + strand, within TX73_002595at 555.621 kb on - strand, within TX73_002595at 555.637 kb on + strand, within TX73_002595at 555.637 kb on + strand, within TX73_002595at 555.645 kb on - strand, within TX73_002595at 555.645 kb on - strand, within TX73_002595at 555.645 kb on - strand, within TX73_002595at 555.645 kb on - strand, within TX73_002595at 555.647 kb on + strand, within TX73_002595at 555.655 kb on - strand, within TX73_002595at 555.666 kb on + strand, within TX73_002595at 555.666 kb on + strand, within TX73_002595at 555.673 kb on + strand, within TX73_002595at 555.674 kb on - strand, within TX73_002595at 555.678 kb on + strand, within TX73_002595at 555.681 kb on - strand, within TX73_002595at 555.686 kb on - strand, within TX73_002595at 555.688 kb on + strand, within TX73_002595at 555.696 kb on - strand, within TX73_002595at 555.700 kb on + strand, within TX73_002595at 555.700 kb on + strand, within TX73_002595at 555.708 kb on - strand, within TX73_002595at 555.710 kb on - strand, within TX73_002595at 555.717 kb on - strand, within TX73_002595at 555.743 kb on + strand, within TX73_002595at 555.743 kb on + strand, within TX73_002595at 555.743 kb on + strand, within TX73_002595at 555.743 kb on + strand, within TX73_002595at 555.751 kb on - strand, within TX73_002595at 555.821 kb on + strand, within TX73_002595at 555.847 kb on + strand, within TX73_002595at 555.852 kb on + strand, within TX73_002595at 555.852 kb on + strand, within TX73_002595at 555.852 kb on + strand, within TX73_002595at 555.860 kb on - strand, within TX73_002595at 555.860 kb on - strand, within TX73_002595at 555.860 kb on - strand, within TX73_002595at 555.860 kb on - strand, within TX73_002595at 555.864 kb on + strand, within TX73_002595at 555.872 kb on - strand, within TX73_002595at 555.872 kb on - strand, within TX73_002595at 555.875 kb on + strand, within TX73_002595at 555.884 kb on - strand, within TX73_002595at 555.904 kb on - strand, within TX73_002595at 555.951 kb on - strand, within TX73_002595at 555.957 kb on - strand, within TX73_002595at 555.988 kb on + strand, within TX73_002595at 555.994 kb on + strand, within TX73_002595at 556.011 kb on + strand, within TX73_002595at 556.011 kb on + strand, within TX73_002595at 556.011 kb on + strand, within TX73_002595at 556.011 kb on + strand, within TX73_002595at 556.019 kb on - strand, within TX73_002595at 556.019 kb on - strand, within TX73_002595at 556.019 kb on - strand, within TX73_002595at 556.019 kb on - strand, within TX73_002595at 556.019 kb on - strand, within TX73_002595at 556.019 kb on - strand, within TX73_002595at 556.021 kb on - strand, within TX73_002595at 556.036 kb on - strand, within TX73_002595at 556.042 kb on + strand, within TX73_002595at 556.044 kb on - strand, within TX73_002595at 556.046 kb on + strand, within TX73_002595at 556.047 kb on + strand, within TX73_002595at 556.050 kb on - strand, within TX73_002595at 556.050 kb on - strand, within TX73_002595at 556.050 kb on - strand, within TX73_002595at 556.050 kb on - strand, within TX73_002595at 556.055 kb on - strand, within TX73_002595at 556.055 kb on - strand, within TX73_002595at 556.062 kb on - strand, within TX73_002595at 556.070 kb on - strand, within TX73_002595at 556.085 kb on - strand, within TX73_002595at 556.085 kb on - strand, within TX73_002595at 556.090 kb on - strand, within TX73_002595at 556.094 kb on - strandat 556.144 kb on + strandat 556.163 kb on + strandat 556.171 kb on - strandat 556.173 kb on + strandat 556.188 kb on - strandat 556.193 kb on + strandat 556.194 kb on + strandat 556.212 kb on + strandat 556.213 kb on + strandat 556.213 kb on + strandat 556.218 kb on + strandat 556.220 kb on - strandat 556.220 kb on - strandat 556.220 kb on - strandat 556.220 kb on - strandat 556.223 kb on - strandat 556.274 kb on - strandat 556.274 kb on - strandat 556.291 kb on + strandat 556.293 kb on - strandat 556.333 kb on + strand, within TX73_002600at 556.352 kb on + strand, within TX73_002600at 556.352 kb on + strand, within TX73_002600at 556.359 kb on - strand, within TX73_002600at 556.361 kb on + strand, within TX73_002600at 556.366 kb on - strand, within TX73_002600at 556.368 kb on + strand, within TX73_002600at 556.369 kb on - strand, within TX73_002600at 556.437 kb on + strand, within TX73_002600at 556.437 kb on + strand, within TX73_002600at 556.442 kb on + strand, within TX73_002600at 556.445 kb on - strand, within TX73_002600at 556.445 kb on - strand, within TX73_002600at 556.459 kb on + strand, within TX73_002600at 556.467 kb on + strand, within TX73_002600at 556.467 kb on + strand, within TX73_002600at 556.482 kb on - strand, within TX73_002600at 556.491 kb on - strand, within TX73_002600at 556.491 kb on - strand, within TX73_002600at 556.509 kb on - strand, within TX73_002600at 556.512 kb on + strand, within TX73_002600at 556.518 kb on + strand, within TX73_002600at 556.522 kb on + strandat 556.530 kb on - strandat 556.531 kb on - strandat 556.531 kb on - strandat 556.531 kb on - strandat 556.536 kb on + strandat 556.541 kb on + strandat 556.541 kb on + strandat 556.541 kb on + strandat 556.541 kb on + strandat 556.553 kb on + strandat 556.561 kb on - strandat 556.563 kb on + strandat 556.570 kb on - strandat 556.580 kb on - strandat 556.580 kb on - strandat 556.603 kb on - strandat 556.609 kb on + strandat 556.617 kb on - strandat 556.638 kb on - strandat 556.640 kb on + strandat 556.640 kb on + strandat 556.650 kb on + strandat 556.650 kb on + strandat 556.686 kb on - strandat 556.695 kb on + strandat 556.704 kb on + strand, within TX73_002605at 556.709 kb on + strand, within TX73_002605at 556.729 kb on - strand, within TX73_002605at 556.731 kb on - strand, within TX73_002605at 556.733 kb on - strand, within TX73_002605at 556.746 kb on - strand, within TX73_002605at 556.755 kb on - strand, within TX73_002605at 556.762 kb on + strand, within TX73_002605at 556.764 kb on + strand, within TX73_002605at 556.764 kb on + strand, within TX73_002605at 556.764 kb on + strand, within TX73_002605at 556.770 kb on - strand, within TX73_002605at 556.772 kb on - strand, within TX73_002605at 556.787 kb on + strand, within TX73_002605at 556.805 kb on + strand, within TX73_002605at 556.813 kb on - strand, within TX73_002605at 556.817 kb on + strand, within TX73_002605at 556.817 kb on - strand, within TX73_002605at 556.825 kb on - strand, within TX73_002605at 556.825 kb on - strand, within TX73_002605at 556.840 kb on + strand, within TX73_002605at 556.840 kb on + strand, within TX73_002605at 556.840 kb on + strand, within TX73_002605at 556.850 kb on + strand, within TX73_002605at 556.881 kb on + strand, within TX73_002605at 556.899 kb on - strand, within TX73_002605at 556.935 kb on - strand, within TX73_002605at 556.951 kb on - strand, within TX73_002605at 556.951 kb on - strand, within TX73_002605at 556.965 kb on + strand, within TX73_002605at 556.973 kb on - strand, within TX73_002605at 556.993 kb on - strand, within TX73_002605at 557.012 kb on - strand, within TX73_002605at 557.030 kb on + strand, within TX73_002605at 557.051 kb on - strand, within TX73_002605at 557.061 kb on + strand, within TX73_002605at 557.100 kb on - strand, within TX73_002605at 557.105 kb on - strand, within TX73_002605at 557.129 kb on - strand, within TX73_002605at 557.147 kb on + strand, within TX73_002605at 557.150 kb on - strand, within TX73_002605at 557.155 kb on - strand, within TX73_002605at 557.155 kb on - strand, within TX73_002605at 557.173 kb on - strand, within TX73_002605at 557.178 kb on + strand, within TX73_002605at 557.180 kb on + strand, within TX73_002605at 557.180 kb on + strand, within TX73_002605at 557.180 kb on + strand, within TX73_002605at 557.180 kb on + strand, within TX73_002605at 557.183 kb on + strand, within TX73_002605at 557.186 kb on - strand, within TX73_002605at 557.188 kb on - strand, within TX73_002605at 557.191 kb on - strand, within TX73_002605at 557.222 kb on + strand, within TX73_002605at 557.232 kb on + strand, within TX73_002605at 557.235 kb on - strand, within TX73_002605at 557.253 kb on + strand, within TX73_002605at 557.263 kb on - strand, within TX73_002605at 557.294 kb on + strand, within TX73_002605at 557.309 kb on + strand, within TX73_002605at 557.314 kb on + strand, within TX73_002605at 557.384 kb on + strand, within TX73_002605at 557.415 kb on + strand, within TX73_002605at 557.426 kb on + strand, within TX73_002605at 557.426 kb on + strand, within TX73_002605at 557.426 kb on + strand, within TX73_002605at 557.428 kb on + strand, within TX73_002605at 557.432 kb on - strand, within TX73_002605at 557.434 kb on - strand, within TX73_002605at 557.434 kb on - strand, within TX73_002605at 557.445 kb on + strand, within TX73_002605at 557.455 kb on + strand, within TX73_002605at 557.470 kb on - strand, within TX73_002605at 557.483 kb on - strand, within TX73_002605at 557.513 kb on + strand, within TX73_002605at 557.523 kb on + strand, within TX73_002605at 557.532 kb on - strand, within TX73_002605

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Per-strain Table

Position Strand Gene LocusTag Fraction Butyric Acid (C); anaerobic
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555,284 - TX73_002590 0.73 -0.4
555,284 - TX73_002590 0.73 +0.9
555,289 - TX73_002590 0.74 +0.6
555,291 - TX73_002590 0.74 +0.5
555,294 - TX73_002590 0.75 -0.8
555,310 + TX73_002590 0.78 -0.6
555,328 - TX73_002590 0.80 +0.9
555,338 + TX73_002590 0.82 +0.2
555,343 + TX73_002590 0.83 -0.3
555,346 - TX73_002590 0.83 +1.3
555,353 + TX73_002590 0.84 +0.2
555,353 + TX73_002590 0.84 +0.3
555,356 + TX73_002590 0.85 +0.9
555,356 + TX73_002590 0.85 +0.5
555,369 - TX73_002590 0.87 -0.2
555,407 + -1.0
555,408 + -0.7
555,424 + +0.2
555,432 - +1.2
555,435 - -0.8
555,457 + +0.1
555,457 + +0.0
555,476 - -0.7
555,497 + -0.7
555,510 - -0.3
555,510 - +0.6
555,510 - +0.0
555,519 + -0.5
555,524 - -0.4
555,532 - -1.0
555,548 - +0.1
555,549 - +0.1
555,555 - +0.6
555,570 + +1.1
555,578 - TX73_002595 0.10 +1.0
555,578 - TX73_002595 0.10 +0.9
555,612 - TX73_002595 0.15 -0.1
555,614 + TX73_002595 0.16 +2.0
555,621 - TX73_002595 0.17 +0.9
555,637 + TX73_002595 0.19 -0.3
555,637 + TX73_002595 0.19 +0.7
555,645 - TX73_002595 0.20 +0.5
555,645 - TX73_002595 0.20 +0.4
555,645 - TX73_002595 0.20 +1.6
555,645 - TX73_002595 0.20 +0.8
555,647 + TX73_002595 0.21 -0.2
555,655 - TX73_002595 0.22 +0.4
555,666 + TX73_002595 0.24 +0.2
555,666 + TX73_002595 0.24 -0.7
555,673 + TX73_002595 0.25 +0.5
555,674 - TX73_002595 0.25 -0.2
555,678 + TX73_002595 0.26 +0.4
555,681 - TX73_002595 0.26 +1.0
555,686 - TX73_002595 0.27 +0.7
555,688 + TX73_002595 0.27 +0.2
555,696 - TX73_002595 0.28 +1.1
555,700 + TX73_002595 0.29 -0.7
555,700 + TX73_002595 0.29 +0.7
555,708 - TX73_002595 0.30 -0.3
555,710 - TX73_002595 0.31 +0.0
555,717 - TX73_002595 0.32 +0.5
555,743 + TX73_002595 0.36 +1.7
555,743 + TX73_002595 0.36 +0.6
555,743 + TX73_002595 0.36 +0.6
555,743 + TX73_002595 0.36 +0.2
555,751 - TX73_002595 0.37 +1.1
555,821 + TX73_002595 0.48 +1.0
555,847 + TX73_002595 0.52 +0.3
555,852 + TX73_002595 0.53 -0.9
555,852 + TX73_002595 0.53 +0.3
555,852 + TX73_002595 0.53 -0.2
555,860 - TX73_002595 0.54 +0.0
555,860 - TX73_002595 0.54 +0.4
555,860 - TX73_002595 0.54 -0.5
555,860 - TX73_002595 0.54 +1.3
555,864 + TX73_002595 0.54 +1.3
555,872 - TX73_002595 0.56 +1.2
555,872 - TX73_002595 0.56 +0.9
555,875 + TX73_002595 0.56 -0.2
555,884 - TX73_002595 0.58 +0.8
555,904 - TX73_002595 0.61 -0.3
555,951 - TX73_002595 0.68 +0.3
555,957 - TX73_002595 0.69 +0.7
555,988 + TX73_002595 0.74 +0.0
555,994 + TX73_002595 0.75 +1.3
556,011 + TX73_002595 0.77 -1.3
556,011 + TX73_002595 0.77 -0.1
556,011 + TX73_002595 0.77 +0.7
556,011 + TX73_002595 0.77 +1.8
556,019 - TX73_002595 0.78 +1.5
556,019 - TX73_002595 0.78 +0.0
556,019 - TX73_002595 0.78 -0.1
556,019 - TX73_002595 0.78 +1.7
556,019 - TX73_002595 0.78 +1.3
556,019 - TX73_002595 0.78 +0.9
556,021 - TX73_002595 0.79 +0.9
556,036 - TX73_002595 0.81 +2.1
556,042 + TX73_002595 0.82 -0.6
556,044 - TX73_002595 0.82 +0.6
556,046 + TX73_002595 0.83 +3.1
556,047 + TX73_002595 0.83 +1.0
556,050 - TX73_002595 0.83 -0.4
556,050 - TX73_002595 0.83 +1.0
556,050 - TX73_002595 0.83 +0.5
556,050 - TX73_002595 0.83 +0.2
556,055 - TX73_002595 0.84 +0.3
556,055 - TX73_002595 0.84 +1.0
556,062 - TX73_002595 0.85 +0.9
556,070 - TX73_002595 0.86 +0.3
556,085 - TX73_002595 0.89 +0.1
556,085 - TX73_002595 0.89 -0.1
556,090 - TX73_002595 0.89 -0.3
556,094 - +1.4
556,144 + +0.8
556,163 + +0.4
556,171 - +0.3
556,173 + +1.6
556,188 - +0.4
556,193 + -1.0
556,194 + +0.0
556,212 + +0.4
556,213 + -1.2
556,213 + +0.1
556,218 + +0.0
556,220 - +0.3
556,220 - -0.0
556,220 - +1.2
556,220 - -0.3
556,223 - +0.1
556,274 - +0.9
556,274 - +0.2
556,291 + -0.1
556,293 - +0.2
556,333 + TX73_002600 0.20 -0.8
556,352 + TX73_002600 0.27 +0.2
556,352 + TX73_002600 0.27 -0.9
556,359 - TX73_002600 0.30 -0.2
556,361 + TX73_002600 0.31 -0.0
556,366 - TX73_002600 0.33 -1.0
556,368 + TX73_002600 0.33 +0.1
556,369 - TX73_002600 0.34 -0.2
556,437 + TX73_002600 0.59 -0.7
556,437 + TX73_002600 0.59 +0.5
556,442 + TX73_002600 0.61 +0.4
556,445 - TX73_002600 0.62 -0.3
556,445 - TX73_002600 0.62 -0.2
556,459 + TX73_002600 0.67 -1.0
556,467 + TX73_002600 0.70 -0.4
556,467 + TX73_002600 0.70 -0.4
556,482 - TX73_002600 0.76 -0.1
556,491 - TX73_002600 0.79 -1.1
556,491 - TX73_002600 0.79 +0.3
556,509 - TX73_002600 0.86 -0.3
556,512 + TX73_002600 0.87 +0.4
556,518 + TX73_002600 0.89 +0.1
556,522 + -0.4
556,530 - -0.1
556,531 - -0.2
556,531 - -0.1
556,531 - -0.1
556,536 + -0.0
556,541 + +0.1
556,541 + -0.4
556,541 + +0.7
556,541 + +0.2
556,553 + -0.1
556,561 - +0.4
556,563 + -0.2
556,570 - -0.1
556,580 - -0.2
556,580 - +0.6
556,603 - -0.6
556,609 + -0.0
556,617 - -1.3
556,638 - -0.4
556,640 + +0.8
556,640 + -0.5
556,650 + -1.1
556,650 + -1.0
556,686 - -0.8
556,695 + +0.1
556,704 + TX73_002605 0.10 -1.9
556,709 + TX73_002605 0.11 -0.4
556,729 - TX73_002605 0.12 +0.3
556,731 - TX73_002605 0.12 +0.1
556,733 - TX73_002605 0.12 +1.0
556,746 - TX73_002605 0.13 +0.1
556,755 - TX73_002605 0.14 -0.4
556,762 + TX73_002605 0.14 +0.3
556,764 + TX73_002605 0.15 -0.9
556,764 + TX73_002605 0.15 +0.2
556,764 + TX73_002605 0.15 -0.3
556,770 - TX73_002605 0.15 +0.3
556,772 - TX73_002605 0.15 -0.0
556,787 + TX73_002605 0.16 -0.9
556,805 + TX73_002605 0.18 +0.0
556,813 - TX73_002605 0.18 +0.5
556,817 + TX73_002605 0.19 +0.5
556,817 - TX73_002605 0.19 -0.6
556,825 - TX73_002605 0.19 +0.0
556,825 - TX73_002605 0.19 +0.5
556,840 + TX73_002605 0.20 -0.3
556,840 + TX73_002605 0.20 +0.7
556,840 + TX73_002605 0.20 +0.5
556,850 + TX73_002605 0.21 +0.2
556,881 + TX73_002605 0.23 +0.6
556,899 - TX73_002605 0.25 -0.0
556,935 - TX73_002605 0.27 -0.0
556,951 - TX73_002605 0.28 +0.1
556,951 - TX73_002605 0.28 +0.6
556,965 + TX73_002605 0.29 -1.7
556,973 - TX73_002605 0.30 +0.1
556,993 - TX73_002605 0.31 +0.6
557,012 - TX73_002605 0.33 +0.2
557,030 + TX73_002605 0.34 -0.4
557,051 - TX73_002605 0.36 -0.9
557,061 + TX73_002605 0.36 -0.3
557,100 - TX73_002605 0.39 -0.2
557,105 - TX73_002605 0.40 +0.2
557,129 - TX73_002605 0.41 +0.3
557,147 + TX73_002605 0.43 +0.5
557,150 - TX73_002605 0.43 -0.2
557,155 - TX73_002605 0.43 -0.8
557,155 - TX73_002605 0.43 -0.9
557,173 - TX73_002605 0.45 +0.7
557,178 + TX73_002605 0.45 +0.4
557,180 + TX73_002605 0.45 +0.6
557,180 + TX73_002605 0.45 +1.9
557,180 + TX73_002605 0.45 -0.3
557,180 + TX73_002605 0.45 -0.2
557,183 + TX73_002605 0.45 +1.3
557,186 - TX73_002605 0.46 -0.3
557,188 - TX73_002605 0.46 -0.7
557,191 - TX73_002605 0.46 -1.2
557,222 + TX73_002605 0.48 -0.4
557,232 + TX73_002605 0.49 +0.2
557,235 - TX73_002605 0.49 +1.3
557,253 + TX73_002605 0.51 +1.1
557,263 - TX73_002605 0.51 -0.1
557,294 + TX73_002605 0.54 -0.1
557,309 + TX73_002605 0.55 -0.1
557,314 + TX73_002605 0.55 +0.2
557,384 + TX73_002605 0.60 -0.5
557,415 + TX73_002605 0.62 -0.9
557,426 + TX73_002605 0.63 -0.1
557,426 + TX73_002605 0.63 -0.4
557,426 + TX73_002605 0.63 -0.2
557,428 + TX73_002605 0.63 -0.4
557,432 - TX73_002605 0.64 +0.1
557,434 - TX73_002605 0.64 +0.2
557,434 - TX73_002605 0.64 -0.1
557,445 + TX73_002605 0.65 -0.5
557,455 + TX73_002605 0.65 +0.3
557,470 - TX73_002605 0.66 +0.1
557,483 - TX73_002605 0.67 -0.7
557,513 + TX73_002605 0.70 +0.1
557,523 + TX73_002605 0.70 -0.4
557,532 - TX73_002605 0.71 +0.8

Or see this region's nucleotide sequence