Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_010005

Experiment: Azelaic (C); anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Azelaic (C); anaerobic
2,182,988	-				+0.0
2,182,988	-				+0.2
2,183,004	-				-1.3
2,183,006	+				+1.6
2,183,027	-				+0.4
2,183,041	+		TX73_010000	0.10	+0.4
2,183,041	+		TX73_010000	0.10	-0.0
2,183,055	-		TX73_010000	0.12	-0.1
2,183,107	+		TX73_010000	0.17	+0.3
2,183,196	+		TX73_010000	0.26	+0.3
2,183,226	-		TX73_010000	0.29	-0.2
2,183,297	-		TX73_010000	0.37	+0.2
2,183,318	+		TX73_010000	0.39	-0.3
2,183,334	-		TX73_010000	0.40	+1.2
2,183,336	+		TX73_010000	0.41	+0.3
2,183,339	-		TX73_010000	0.41	-0.2
2,183,349	-		TX73_010000	0.42	+0.9
2,183,354	-		TX73_010000	0.42	-0.5
2,183,356	-		TX73_010000	0.43	-1.0
2,183,365	-		TX73_010000	0.44	-0.9
2,183,377	+		TX73_010000	0.45	-0.0
2,183,383	-		TX73_010000	0.45	-0.1
2,183,433	+		TX73_010000	0.51	+0.3
2,183,433	+		TX73_010000	0.51	+0.2
2,183,433	+		TX73_010000	0.51	+3.2
2,183,435	+		TX73_010000	0.51	+0.8
2,183,441	-		TX73_010000	0.51	+0.2
2,183,441	-		TX73_010000	0.51	+0.2
2,183,441	-		TX73_010000	0.51	+1.0
2,183,441	-		TX73_010000	0.51	-0.2
2,183,443	-		TX73_010000	0.52	-0.1
2,183,458	+		TX73_010000	0.53	+0.4
2,183,462	-		TX73_010000	0.54	+1.0
2,183,489	+		TX73_010000	0.56	-0.2
2,183,492	-		TX73_010000	0.57	+0.4
2,183,506	-		TX73_010000	0.58	-0.6
2,183,554	+		TX73_010000	0.63	-0.8
2,183,556	+		TX73_010000	0.63	+0.9
2,183,557	-		TX73_010000	0.63	+0.1
2,183,564	-		TX73_010000	0.64	+0.3
2,183,574	-		TX73_010000	0.65	+1.0
2,183,593	-		TX73_010000	0.67	+0.3
2,183,593	-		TX73_010000	0.67	+0.6
2,183,630	+		TX73_010000	0.71	-1.7
2,183,638	-		TX73_010000	0.72	+0.9
2,183,638	-		TX73_010000	0.72	-0.3
2,183,638	-		TX73_010000	0.72	-0.4
2,183,653	-		TX73_010000	0.73	+0.1
2,183,682	-		TX73_010000	0.76	+0.2
2,183,687	+		TX73_010000	0.77	-1.7
2,183,687	+		TX73_010000	0.77	+0.3
2,183,695	-		TX73_010000	0.78	-0.1
2,183,696	-		TX73_010000	0.78	-0.1
2,183,701	-		TX73_010000	0.78	+0.3
2,183,735	+		TX73_010000	0.82	-0.4
2,183,735	+		TX73_010000	0.82	-1.2
2,183,743	-		TX73_010000	0.83	-0.4
2,183,753	-		TX73_010000	0.84	-0.3
2,183,766	+		TX73_010000	0.85	+0.4
2,183,785	-		TX73_010000	0.87	-0.2
2,183,786	-		TX73_010000	0.87	-0.4
2,183,794	+		TX73_010000	0.88	+0.2
2,183,828	+				+0.7
2,183,828	+				+0.9
2,183,828	+				-2.2
2,183,833	+				-0.7
2,183,836	-				+0.6
2,183,859	-				-0.6
2,183,864	-				-0.6
2,183,916	+				+0.2
2,183,917	+				+0.1
2,183,950	+				+0.6
2,183,951	+				-0.1
2,183,979	+				-0.2
2,183,987	-				+0.5
2,183,991	+				-0.9
2,184,041	-				-0.2
2,184,064	-		TX73_010005	0.11	+0.2
2,184,076	+		TX73_010005	0.12	-0.1
2,184,085	-		TX73_010005	0.13	-0.9
2,184,085	-		TX73_010005	0.13	-0.6
2,184,098	+		TX73_010005	0.14	+0.5
2,184,106	-		TX73_010005	0.15	-0.1
2,184,134	-		TX73_010005	0.18	-0.1
2,184,162	+		TX73_010005	0.21	+0.0
2,184,162	+		TX73_010005	0.21	-0.2
2,184,172	+		TX73_010005	0.22	-0.5
2,184,197	-		TX73_010005	0.24	+0.8
2,184,219	+		TX73_010005	0.27	-0.9
2,184,243	+		TX73_010005	0.29	+0.6
2,184,251	-		TX73_010005	0.30	+0.3
2,184,253	+		TX73_010005	0.30	+0.1
2,184,253	+		TX73_010005	0.30	+0.1
2,184,263	+		TX73_010005	0.31	+0.3
2,184,263	-		TX73_010005	0.31	+0.5
2,184,268	+		TX73_010005	0.32	+1.3
2,184,276	-		TX73_010005	0.32	-0.0
2,184,279	+		TX73_010005	0.33	+0.1
2,184,310	-		TX73_010005	0.36	-0.5
2,184,331	+		TX73_010005	0.38	-0.0
2,184,332	-		TX73_010005	0.38	+0.5
2,184,340	+		TX73_010005	0.39	-0.1
2,184,428	+		TX73_010005	0.48	+0.1
2,184,438	+		TX73_010005	0.49	-1.3
2,184,464	+		TX73_010005	0.51	-0.3
2,184,469	+		TX73_010005	0.52	-0.6
2,184,472	-		TX73_010005	0.52	-1.0
2,184,475	+		TX73_010005	0.52	-0.5
2,184,477	-		TX73_010005	0.53	+1.4
2,184,483	-		TX73_010005	0.53	-0.7
2,184,483	-		TX73_010005	0.53	-0.4
2,184,488	+		TX73_010005	0.54	-0.0
2,184,548	-		TX73_010005	0.60	-0.3
2,184,582	-		TX73_010005	0.63	-2.1
2,184,603	-		TX73_010005	0.65	-0.4
2,184,625	-		TX73_010005	0.67	-0.5
2,184,653	+		TX73_010005	0.70	+0.4
2,184,694	+		TX73_010005	0.74	-1.0
2,184,707	-		TX73_010005	0.76	-0.2
2,184,707	-		TX73_010005	0.76	-2.0
2,184,744	-		TX73_010005	0.79	+0.3
2,184,759	-		TX73_010005	0.81	-0.7
2,184,759	-		TX73_010005	0.81	-0.4
2,184,796	-		TX73_010005	0.85	+0.2
2,184,855	+				-1.0
2,184,938	+				-1.0
2,184,949	+				-0.4
2,184,958	+				+0.4
2,184,958	+				-0.3
2,184,958	+				+0.8
2,184,966	-				+1.1
2,184,966	-				+0.5
2,184,966	-				-1.3
2,184,966	-				+0.5
2,184,966	-				-0.6
2,184,966	-				-0.5
2,184,966	-				-0.5
2,184,966	-				-0.5
2,184,968	+				+1.1
2,185,054	-				-0.1
2,185,093	-				-0.3
2,185,271	+		TX73_010010	0.10	-1.3
2,185,335	-		TX73_010010	0.18	-0.4
2,185,335	-		TX73_010010	0.18	-0.1
2,185,349	+		TX73_010010	0.20	+0.1
2,185,412	+		TX73_010010	0.28	-0.8
2,185,412	+		TX73_010010	0.28	+0.5
2,185,412	+		TX73_010010	0.28	+0.3
2,185,420	-		TX73_010010	0.29	-1.0
2,185,433	-		TX73_010010	0.31	-0.3
2,185,457	-		TX73_010010	0.34	+0.8
2,185,458	-		TX73_010010	0.34	+0.6
2,185,502	-		TX73_010010	0.40	+0.8
2,185,693	-		TX73_010010	0.64	-0.8
2,185,832	-		TX73_010010	0.82	+0.9
2,185,842	+		TX73_010010	0.83	-1.4