Experiment: Azelaic (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001635 and TX73_001640 are separated by 188 nucleotides TX73_001640 and TX73_001645 are separated by 160 nucleotides
TX73_001635: TX73_001635 - type I pantothenate kinase, at 342,457 to 343,413
_001635
TX73_001640: TX73_001640 - GNAT family N-acetyltransferase, at 343,602 to 344,552
_001640
TX73_001645: TX73_001645 - ATP-binding protein, at 344,713 to 346,623
_001645
Position (kb) 343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.494 kb on + strand at 343.500 kb on - strand at 343.517 kb on - strand at 343.549 kb on - strand at 343.554 kb on - strand at 343.594 kb on - strand at 343.743 kb on - strand, within TX73_001640 at 343.952 kb on - strand, within TX73_001640 at 344.011 kb on - strand, within TX73_001640 at 344.116 kb on + strand, within TX73_001640 at 344.124 kb on - strand, within TX73_001640 at 344.124 kb on - strand, within TX73_001640 at 344.228 kb on + strand, within TX73_001640 at 344.236 kb on - strand, within TX73_001640 at 344.276 kb on - strand, within TX73_001640 at 344.306 kb on + strand, within TX73_001640 at 344.308 kb on + strand, within TX73_001640 at 344.384 kb on + strand, within TX73_001640 at 344.431 kb on - strand, within TX73_001640 at 344.494 kb on + strand at 344.557 kb on - strand at 344.695 kb on + strand at 344.705 kb on - strand at 344.743 kb on + strand at 344.798 kb on + strand at 344.798 kb on + strand at 344.893 kb on - strand at 344.894 kb on + strand at 344.894 kb on + strand at 344.894 kb on + strand at 344.902 kb on - strand at 344.921 kb on + strand, within TX73_001645 at 344.955 kb on - strand, within TX73_001645 at 344.977 kb on + strand, within TX73_001645 at 344.977 kb on + strand, within TX73_001645 at 344.982 kb on - strand, within TX73_001645 at 345.049 kb on + strand, within TX73_001645 at 345.049 kb on + strand, within TX73_001645 at 345.112 kb on + strand, within TX73_001645 at 345.175 kb on - strand, within TX73_001645 at 345.185 kb on + strand, within TX73_001645 at 345.193 kb on - strand, within TX73_001645 at 345.205 kb on - strand, within TX73_001645 at 345.226 kb on + strand, within TX73_001645 at 345.232 kb on - strand, within TX73_001645 at 345.328 kb on + strand, within TX73_001645 at 345.328 kb on + strand, within TX73_001645 at 345.328 kb on + strand, within TX73_001645 at 345.328 kb on + strand, within TX73_001645 at 345.336 kb on - strand, within TX73_001645 at 345.336 kb on - strand, within TX73_001645 at 345.336 kb on - strand, within TX73_001645 at 345.360 kb on + strand, within TX73_001645 at 345.368 kb on - strand, within TX73_001645 at 345.390 kb on - strand, within TX73_001645 at 345.395 kb on + strand, within TX73_001645 at 345.398 kb on - strand, within TX73_001645 at 345.447 kb on + strand, within TX73_001645 at 345.455 kb on - strand, within TX73_001645 at 345.469 kb on - strand, within TX73_001645 at 345.486 kb on - strand, within TX73_001645 at 345.497 kb on - strand, within TX73_001645 at 345.503 kb on - strand, within TX73_001645 at 345.530 kb on - strand, within TX73_001645
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C); anaerobic remove 343,494 + +0.8 343,500 - -0.2 343,517 - +0.2 343,549 - +0.5 343,554 - +0.1 343,594 - -1.2 343,743 - TX73_001640 0.15 +0.2 343,952 - TX73_001640 0.37 +0.3 344,011 - TX73_001640 0.43 -0.4 344,116 + TX73_001640 0.54 +0.8 344,124 - TX73_001640 0.55 +0.2 344,124 - TX73_001640 0.55 +0.3 344,228 + TX73_001640 0.66 -0.6 344,236 - TX73_001640 0.67 -0.4 344,276 - TX73_001640 0.71 -0.0 344,306 + TX73_001640 0.74 +1.2 344,308 + TX73_001640 0.74 +0.7 344,384 + TX73_001640 0.82 -0.4 344,431 - TX73_001640 0.87 +0.4 344,494 + +0.3 344,557 - -1.1 344,695 + +0.2 344,705 - +0.4 344,743 + -0.5 344,798 + -0.3 344,798 + +0.1 344,893 - +0.1 344,894 + +0.8 344,894 + -0.2 344,894 + -0.4 344,902 - -0.0 344,921 + TX73_001645 0.11 -1.2 344,955 - TX73_001645 0.13 +1.7 344,977 + TX73_001645 0.14 +0.5 344,977 + TX73_001645 0.14 -0.3 344,982 - TX73_001645 0.14 +0.1 345,049 + TX73_001645 0.18 +0.2 345,049 + TX73_001645 0.18 +1.0 345,112 + TX73_001645 0.21 -0.2 345,175 - TX73_001645 0.24 +0.2 345,185 + TX73_001645 0.25 -0.5 345,193 - TX73_001645 0.25 +0.4 345,205 - TX73_001645 0.26 -0.2 345,226 + TX73_001645 0.27 +0.4 345,232 - TX73_001645 0.27 -0.1 345,328 + TX73_001645 0.32 -0.1 345,328 + TX73_001645 0.32 -0.1 345,328 + TX73_001645 0.32 +0.0 345,328 + TX73_001645 0.32 +0.5 345,336 - TX73_001645 0.33 -0.2 345,336 - TX73_001645 0.33 +1.0 345,336 - TX73_001645 0.33 +0.2 345,360 + TX73_001645 0.34 -1.0 345,368 - TX73_001645 0.34 +0.1 345,390 - TX73_001645 0.35 -0.9 345,395 + TX73_001645 0.36 +0.1 345,398 - TX73_001645 0.36 +0.6 345,447 + TX73_001645 0.38 -0.6 345,455 - TX73_001645 0.39 -0.4 345,469 - TX73_001645 0.40 +0.3 345,486 - TX73_001645 0.40 +0.6 345,497 - TX73_001645 0.41 +2.1 345,503 - TX73_001645 0.41 +0.3 345,530 - TX73_001645 0.43 -1.8
Or see this region's nucleotide sequence