Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023660

Experiment: Azelaic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_023655 and TX73_023660 are separated by 53 nucleotidesTX73_023660 and TX73_023665 are separated by 11 nucleotidesTX73_023665 and TX73_023670 are separated by 33 nucleotides TX73_023655: TX73_023655 - acyl-CoA/acyl-ACP dehydrogenase, at 5,132,919 to 5,134,085 _023655 TX73_023660: TX73_023660 - TRAP transporter large permease, at 5,134,139 to 5,135,428 _023660 TX73_023665: TX73_023665 - TRAP transporter small permease, at 5,135,440 to 5,135,991 _023665 TX73_023670: TX73_023670 - TRAP transporter substrate-binding protein DctP, at 5,136,025 to 5,137,050 _023670 Position (kb) 5134 5135 5136Strain fitness (log2 ratio) -2 -1 0 1 2at 5133.141 kb on - strand, within TX73_023655at 5133.205 kb on + strand, within TX73_023655at 5133.213 kb on - strand, within TX73_023655at 5133.235 kb on + strand, within TX73_023655at 5133.243 kb on - strand, within TX73_023655at 5133.258 kb on + strand, within TX73_023655at 5133.258 kb on + strand, within TX73_023655at 5133.283 kb on - strand, within TX73_023655at 5133.369 kb on - strand, within TX73_023655at 5133.390 kb on - strand, within TX73_023655at 5133.458 kb on - strand, within TX73_023655at 5133.488 kb on - strand, within TX73_023655at 5133.504 kb on + strand, within TX73_023655at 5133.514 kb on + strand, within TX73_023655at 5133.522 kb on - strand, within TX73_023655at 5133.522 kb on - strand, within TX73_023655at 5133.524 kb on + strand, within TX73_023655at 5133.651 kb on + strand, within TX73_023655at 5133.657 kb on - strand, within TX73_023655at 5133.657 kb on - strand, within TX73_023655at 5133.659 kb on - strand, within TX73_023655at 5133.667 kb on + strand, within TX73_023655at 5133.667 kb on + strand, within TX73_023655at 5133.689 kb on + strand, within TX73_023655at 5133.694 kb on + strand, within TX73_023655at 5133.740 kb on - strand, within TX73_023655at 5133.767 kb on + strand, within TX73_023655at 5133.775 kb on + strand, within TX73_023655at 5133.775 kb on + strand, within TX73_023655at 5133.783 kb on - strand, within TX73_023655at 5133.809 kb on + strand, within TX73_023655at 5133.906 kb on + strand, within TX73_023655at 5133.956 kb on - strand, within TX73_023655at 5133.967 kb on - strand, within TX73_023655at 5133.999 kb on - strandat 5134.123 kb on - strandat 5134.124 kb on + strandat 5134.136 kb on + strandat 5134.144 kb on - strandat 5134.211 kb on - strandat 5134.236 kb on - strandat 5134.353 kb on - strand, within TX73_023660at 5134.368 kb on - strand, within TX73_023660at 5134.402 kb on - strand, within TX73_023660at 5134.408 kb on + strand, within TX73_023660at 5134.462 kb on + strand, within TX73_023660at 5134.470 kb on - strand, within TX73_023660at 5134.470 kb on - strand, within TX73_023660at 5134.528 kb on - strand, within TX73_023660at 5134.538 kb on - strand, within TX73_023660at 5134.540 kb on + strand, within TX73_023660at 5134.579 kb on - strand, within TX73_023660at 5134.608 kb on + strand, within TX73_023660at 5134.611 kb on - strand, within TX73_023660at 5134.613 kb on + strand, within TX73_023660at 5134.620 kb on + strand, within TX73_023660at 5134.620 kb on + strand, within TX73_023660at 5134.620 kb on + strand, within TX73_023660at 5134.620 kb on + strand, within TX73_023660at 5134.620 kb on + strand, within TX73_023660at 5134.622 kb on + strand, within TX73_023660at 5134.628 kb on - strand, within TX73_023660at 5134.633 kb on - strand, within TX73_023660at 5134.633 kb on - strand, within TX73_023660at 5134.638 kb on + strand, within TX73_023660at 5134.650 kb on + strand, within TX73_023660at 5134.652 kb on - strand, within TX73_023660at 5134.751 kb on - strand, within TX73_023660at 5134.759 kb on + strand, within TX73_023660at 5134.786 kb on - strand, within TX73_023660at 5134.852 kb on - strand, within TX73_023660at 5134.852 kb on - strand, within TX73_023660at 5135.028 kb on + strand, within TX73_023660at 5135.036 kb on - strand, within TX73_023660at 5135.061 kb on + strand, within TX73_023660at 5135.061 kb on + strand, within TX73_023660at 5135.069 kb on - strand, within TX73_023660at 5135.155 kb on + strand, within TX73_023660at 5135.155 kb on + strand, within TX73_023660at 5135.166 kb on + strand, within TX73_023660at 5135.169 kb on - strand, within TX73_023660at 5135.181 kb on + strand, within TX73_023660at 5135.189 kb on - strand, within TX73_023660at 5135.210 kb on + strand, within TX73_023660at 5135.270 kb on - strand, within TX73_023660at 5135.271 kb on + strand, within TX73_023660at 5135.308 kb on - strandat 5135.325 kb on + strandat 5135.333 kb on - strandat 5135.357 kb on - strandat 5135.359 kb on + strandat 5135.359 kb on + strandat 5135.393 kb on + strandat 5135.394 kb on + strandat 5135.421 kb on - strandat 5135.421 kb on - strandat 5135.486 kb on + strandat 5135.512 kb on - strand, within TX73_023665at 5135.711 kb on - strand, within TX73_023665at 5135.738 kb on + strand, within TX73_023665at 5135.829 kb on + strand, within TX73_023665at 5135.833 kb on - strand, within TX73_023665at 5135.837 kb on - strand, within TX73_023665at 5135.842 kb on - strand, within TX73_023665at 5135.844 kb on + strand, within TX73_023665at 5135.852 kb on - strand, within TX73_023665at 5135.869 kb on + strand, within TX73_023665at 5135.892 kb on - strand, within TX73_023665at 5135.957 kb on - strandat 5136.016 kb on + strandat 5136.097 kb on + strandat 5136.105 kb on - strandat 5136.136 kb on - strand, within TX73_023670at 5136.153 kb on + strand, within TX73_023670at 5136.181 kb on + strand, within TX73_023670at 5136.189 kb on - strand, within TX73_023670at 5136.212 kb on - strand, within TX73_023670at 5136.304 kb on - strand, within TX73_023670at 5136.311 kb on - strand, within TX73_023670at 5136.424 kb on + strand, within TX73_023670at 5136.428 kb on + strand, within TX73_023670

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C); anaerobic
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5,133,141 - TX73_023655 0.19 +1.2
5,133,205 + TX73_023655 0.25 +0.2
5,133,213 - TX73_023655 0.25 -0.1
5,133,235 + TX73_023655 0.27 +0.6
5,133,243 - TX73_023655 0.28 -0.8
5,133,258 + TX73_023655 0.29 -1.2
5,133,258 + TX73_023655 0.29 +0.7
5,133,283 - TX73_023655 0.31 +0.8
5,133,369 - TX73_023655 0.39 +0.8
5,133,390 - TX73_023655 0.40 +0.8
5,133,458 - TX73_023655 0.46 -0.4
5,133,488 - TX73_023655 0.49 +1.4
5,133,504 + TX73_023655 0.50 +0.2
5,133,514 + TX73_023655 0.51 +0.2
5,133,522 - TX73_023655 0.52 +0.4
5,133,522 - TX73_023655 0.52 -0.2
5,133,524 + TX73_023655 0.52 +0.0
5,133,651 + TX73_023655 0.63 +0.4
5,133,657 - TX73_023655 0.63 +0.6
5,133,657 - TX73_023655 0.63 -0.5
5,133,659 - TX73_023655 0.63 +1.1
5,133,667 + TX73_023655 0.64 +1.1
5,133,667 + TX73_023655 0.64 -1.5
5,133,689 + TX73_023655 0.66 +0.4
5,133,694 + TX73_023655 0.66 -0.3
5,133,740 - TX73_023655 0.70 -0.6
5,133,767 + TX73_023655 0.73 +0.2
5,133,775 + TX73_023655 0.73 +1.0
5,133,775 + TX73_023655 0.73 +0.2
5,133,783 - TX73_023655 0.74 +0.6
5,133,809 + TX73_023655 0.76 +0.3
5,133,906 + TX73_023655 0.85 +0.1
5,133,956 - TX73_023655 0.89 +0.3
5,133,967 - TX73_023655 0.90 -0.3
5,133,999 - +0.3
5,134,123 - +0.8
5,134,124 + +0.7
5,134,136 + +0.9
5,134,144 - -0.2
5,134,211 - +0.1
5,134,236 - -0.2
5,134,353 - TX73_023660 0.17 +0.9
5,134,368 - TX73_023660 0.18 -0.1
5,134,402 - TX73_023660 0.20 -0.6
5,134,408 + TX73_023660 0.21 +0.1
5,134,462 + TX73_023660 0.25 +2.4
5,134,470 - TX73_023660 0.26 -0.5
5,134,470 - TX73_023660 0.26 +0.5
5,134,528 - TX73_023660 0.30 +1.0
5,134,538 - TX73_023660 0.31 -2.0
5,134,540 + TX73_023660 0.31 -0.6
5,134,579 - TX73_023660 0.34 +0.1
5,134,608 + TX73_023660 0.36 +0.0
5,134,611 - TX73_023660 0.37 -0.2
5,134,613 + TX73_023660 0.37 +0.0
5,134,620 + TX73_023660 0.37 +1.0
5,134,620 + TX73_023660 0.37 -0.9
5,134,620 + TX73_023660 0.37 -0.4
5,134,620 + TX73_023660 0.37 +0.0
5,134,620 + TX73_023660 0.37 -0.7
5,134,622 + TX73_023660 0.37 -0.1
5,134,628 - TX73_023660 0.38 +0.1
5,134,633 - TX73_023660 0.38 +0.4
5,134,633 - TX73_023660 0.38 -0.9
5,134,638 + TX73_023660 0.39 +1.2
5,134,650 + TX73_023660 0.40 -0.8
5,134,652 - TX73_023660 0.40 +0.5
5,134,751 - TX73_023660 0.47 +0.8
5,134,759 + TX73_023660 0.48 +1.0
5,134,786 - TX73_023660 0.50 +0.6
5,134,852 - TX73_023660 0.55 +0.4
5,134,852 - TX73_023660 0.55 +0.6
5,135,028 + TX73_023660 0.69 -1.8
5,135,036 - TX73_023660 0.70 +0.4
5,135,061 + TX73_023660 0.71 +0.9
5,135,061 + TX73_023660 0.71 -0.4
5,135,069 - TX73_023660 0.72 -1.8
5,135,155 + TX73_023660 0.79 +0.6
5,135,155 + TX73_023660 0.79 +0.2
5,135,166 + TX73_023660 0.80 +0.9
5,135,169 - TX73_023660 0.80 +0.8
5,135,181 + TX73_023660 0.81 +0.0
5,135,189 - TX73_023660 0.81 +2.2
5,135,210 + TX73_023660 0.83 -0.3
5,135,270 - TX73_023660 0.88 +0.1
5,135,271 + TX73_023660 0.88 +1.0
5,135,308 - +0.2
5,135,325 + +0.3
5,135,333 - -0.5
5,135,357 - +0.3
5,135,359 + +0.6
5,135,359 + +0.6
5,135,393 + +0.1
5,135,394 + -0.2
5,135,421 - +0.3
5,135,421 - +0.4
5,135,486 + -0.7
5,135,512 - TX73_023665 0.13 -0.2
5,135,711 - TX73_023665 0.49 -0.9
5,135,738 + TX73_023665 0.54 +1.2
5,135,829 + TX73_023665 0.70 +0.4
5,135,833 - TX73_023665 0.71 -0.3
5,135,837 - TX73_023665 0.72 +0.3
5,135,842 - TX73_023665 0.73 -0.3
5,135,844 + TX73_023665 0.73 +0.6
5,135,852 - TX73_023665 0.75 +0.5
5,135,869 + TX73_023665 0.78 +0.9
5,135,892 - TX73_023665 0.82 +0.2
5,135,957 - +0.2
5,136,016 + -0.3
5,136,097 + +0.0
5,136,105 - +0.6
5,136,136 - TX73_023670 0.11 -0.3
5,136,153 + TX73_023670 0.12 -0.5
5,136,181 + TX73_023670 0.15 -0.1
5,136,189 - TX73_023670 0.16 +0.0
5,136,212 - TX73_023670 0.18 -0.0
5,136,304 - TX73_023670 0.27 -0.3
5,136,311 - TX73_023670 0.28 -0.2
5,136,424 + TX73_023670 0.39 +1.0
5,136,428 + TX73_023670 0.39 -0.8

Or see this region's nucleotide sequence