Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_010700

Experiment: 4-Aminobutyric (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_010690 and TX73_010695 are separated by 87 nucleotidesTX73_010695 and TX73_010700 are separated by 142 nucleotidesTX73_010700 and TX73_010705 are separated by 5 nucleotides TX73_010690: TX73_010690 - PAS domain S-box protein, at 2,333,797 to 2,335,698 _010690 TX73_010695: TX73_010695 - EscE/YscE/SsaE family type III secretion system needle protein co-chaperone, at 2,335,786 to 2,335,983 _010695 TX73_010700: TX73_010700 - HWE histidine kinase domain-containing protein, at 2,336,126 to 2,336,803 _010700 TX73_010705: TX73_010705 - Crp/Fnr family transcriptional regulator, at 2,336,809 to 2,337,735 _010705 Position (kb) 2336 2337Strain fitness (log2 ratio) -2 -1 0 1 2at 2335.280 kb on - strand, within TX73_010690at 2335.288 kb on - strand, within TX73_010690at 2335.290 kb on + strand, within TX73_010690at 2335.341 kb on - strand, within TX73_010690at 2335.394 kb on + strand, within TX73_010690at 2335.394 kb on + strand, within TX73_010690at 2335.426 kb on + strand, within TX73_010690at 2335.426 kb on + strand, within TX73_010690at 2335.441 kb on - strand, within TX73_010690at 2335.562 kb on - strandat 2335.807 kb on - strand, within TX73_010695at 2335.826 kb on - strand, within TX73_010695at 2335.875 kb on + strand, within TX73_010695at 2335.997 kb on - strandat 2336.143 kb on + strandat 2336.169 kb on - strandat 2336.187 kb on + strandat 2336.243 kb on + strand, within TX73_010700at 2336.251 kb on - strand, within TX73_010700at 2336.326 kb on - strand, within TX73_010700at 2336.352 kb on + strand, within TX73_010700at 2336.381 kb on + strand, within TX73_010700at 2336.389 kb on - strand, within TX73_010700at 2336.393 kb on + strand, within TX73_010700at 2336.453 kb on + strand, within TX73_010700at 2336.513 kb on + strand, within TX73_010700at 2336.593 kb on - strand, within TX73_010700at 2336.685 kb on + strand, within TX73_010700at 2336.690 kb on + strand, within TX73_010700at 2336.693 kb on - strand, within TX73_010700at 2336.693 kb on - strand, within TX73_010700at 2336.703 kb on - strand, within TX73_010700at 2336.703 kb on - strand, within TX73_010700at 2336.727 kb on - strand, within TX73_010700at 2336.786 kb on - strandat 2336.808 kb on - strandat 2336.829 kb on + strandat 2336.851 kb on - strandat 2336.869 kb on - strandat 2336.987 kb on + strand, within TX73_010705at 2337.112 kb on + strand, within TX73_010705at 2337.202 kb on + strand, within TX73_010705at 2337.212 kb on + strand, within TX73_010705at 2337.215 kb on - strand, within TX73_010705at 2337.224 kb on + strand, within TX73_010705at 2337.224 kb on + strand, within TX73_010705at 2337.229 kb on + strand, within TX73_010705at 2337.229 kb on + strand, within TX73_010705at 2337.229 kb on + strand, within TX73_010705at 2337.229 kb on + strand, within TX73_010705at 2337.237 kb on - strand, within TX73_010705at 2337.239 kb on - strand, within TX73_010705at 2337.242 kb on - strand, within TX73_010705at 2337.257 kb on + strand, within TX73_010705at 2337.284 kb on - strand, within TX73_010705at 2337.323 kb on + strand, within TX73_010705at 2337.376 kb on - strand, within TX73_010705at 2337.406 kb on + strand, within TX73_010705at 2337.479 kb on + strand, within TX73_010705at 2337.503 kb on - strand, within TX73_010705at 2337.645 kb on + strandat 2337.658 kb on - strandat 2337.687 kb on + strandat 2337.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic
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2,335,280 - TX73_010690 0.78 -0.2
2,335,288 - TX73_010690 0.78 +0.0
2,335,290 + TX73_010690 0.78 -0.1
2,335,341 - TX73_010690 0.81 -0.3
2,335,394 + TX73_010690 0.84 -0.7
2,335,394 + TX73_010690 0.84 +0.1
2,335,426 + TX73_010690 0.86 +2.0
2,335,426 + TX73_010690 0.86 -0.6
2,335,441 - TX73_010690 0.86 +0.3
2,335,562 - +0.4
2,335,807 - TX73_010695 0.11 -0.3
2,335,826 - TX73_010695 0.20 -0.8
2,335,875 + TX73_010695 0.45 +1.3
2,335,997 - +0.3
2,336,143 + +1.1
2,336,169 - +0.1
2,336,187 + +0.5
2,336,243 + TX73_010700 0.17 -0.3
2,336,251 - TX73_010700 0.18 -0.3
2,336,326 - TX73_010700 0.29 +0.6
2,336,352 + TX73_010700 0.33 -0.2
2,336,381 + TX73_010700 0.38 -0.3
2,336,389 - TX73_010700 0.39 -0.3
2,336,393 + TX73_010700 0.39 +1.4
2,336,453 + TX73_010700 0.48 +0.7
2,336,513 + TX73_010700 0.57 +1.8
2,336,593 - TX73_010700 0.69 -0.1
2,336,685 + TX73_010700 0.82 +0.2
2,336,690 + TX73_010700 0.83 +0.8
2,336,693 - TX73_010700 0.84 +0.9
2,336,693 - TX73_010700 0.84 +0.1
2,336,703 - TX73_010700 0.85 +0.7
2,336,703 - TX73_010700 0.85 +0.5
2,336,727 - TX73_010700 0.89 -0.4
2,336,786 - -0.1
2,336,808 - -0.3
2,336,829 + +0.2
2,336,851 - -0.0
2,336,869 - -0.8
2,336,987 + TX73_010705 0.19 -0.2
2,337,112 + TX73_010705 0.33 +0.4
2,337,202 + TX73_010705 0.42 +0.1
2,337,212 + TX73_010705 0.43 -0.4
2,337,215 - TX73_010705 0.44 -0.5
2,337,224 + TX73_010705 0.45 -0.1
2,337,224 + TX73_010705 0.45 -0.7
2,337,229 + TX73_010705 0.45 -1.3
2,337,229 + TX73_010705 0.45 +0.7
2,337,229 + TX73_010705 0.45 -0.5
2,337,229 + TX73_010705 0.45 -0.4
2,337,237 - TX73_010705 0.46 -0.2
2,337,239 - TX73_010705 0.46 +0.2
2,337,242 - TX73_010705 0.47 +0.2
2,337,257 + TX73_010705 0.48 -0.0
2,337,284 - TX73_010705 0.51 +1.7
2,337,323 + TX73_010705 0.55 +0.3
2,337,376 - TX73_010705 0.61 -2.4
2,337,406 + TX73_010705 0.64 -1.0
2,337,479 + TX73_010705 0.72 +0.4
2,337,503 - TX73_010705 0.75 +0.7
2,337,645 + -0.8
2,337,658 - -0.3
2,337,687 + -0.1
2,337,733 - -0.0

Or see this region's nucleotide sequence