Experiment: 4-Aminobutyric (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_010690 and TX73_010695 are separated by 87 nucleotides TX73_010695 and TX73_010700 are separated by 142 nucleotides TX73_010700 and TX73_010705 are separated by 5 nucleotides
TX73_010690: TX73_010690 - PAS domain S-box protein, at 2,333,797 to 2,335,698
_010690
TX73_010695: TX73_010695 - EscE/YscE/SsaE family type III secretion system needle protein co-chaperone, at 2,335,786 to 2,335,983
_010695
TX73_010700: TX73_010700 - HWE histidine kinase domain-containing protein, at 2,336,126 to 2,336,803
_010700
TX73_010705: TX73_010705 - Crp/Fnr family transcriptional regulator, at 2,336,809 to 2,337,735
_010705
Position (kb)
2336
2337 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2335.280 kb on - strand, within TX73_010690 at 2335.288 kb on - strand, within TX73_010690 at 2335.290 kb on + strand, within TX73_010690 at 2335.341 kb on - strand, within TX73_010690 at 2335.394 kb on + strand, within TX73_010690 at 2335.394 kb on + strand, within TX73_010690 at 2335.426 kb on + strand, within TX73_010690 at 2335.426 kb on + strand, within TX73_010690 at 2335.441 kb on - strand, within TX73_010690 at 2335.562 kb on - strand at 2335.807 kb on - strand, within TX73_010695 at 2335.826 kb on - strand, within TX73_010695 at 2335.875 kb on + strand, within TX73_010695 at 2335.997 kb on - strand at 2336.143 kb on + strand at 2336.169 kb on - strand at 2336.187 kb on + strand at 2336.243 kb on + strand, within TX73_010700 at 2336.251 kb on - strand, within TX73_010700 at 2336.326 kb on - strand, within TX73_010700 at 2336.352 kb on + strand, within TX73_010700 at 2336.381 kb on + strand, within TX73_010700 at 2336.389 kb on - strand, within TX73_010700 at 2336.393 kb on + strand, within TX73_010700 at 2336.453 kb on + strand, within TX73_010700 at 2336.513 kb on + strand, within TX73_010700 at 2336.593 kb on - strand, within TX73_010700 at 2336.685 kb on + strand, within TX73_010700 at 2336.690 kb on + strand, within TX73_010700 at 2336.693 kb on - strand, within TX73_010700 at 2336.693 kb on - strand, within TX73_010700 at 2336.703 kb on - strand, within TX73_010700 at 2336.703 kb on - strand, within TX73_010700 at 2336.727 kb on - strand, within TX73_010700 at 2336.786 kb on - strand at 2336.808 kb on - strand at 2336.829 kb on + strand at 2336.851 kb on - strand at 2336.869 kb on - strand at 2336.987 kb on + strand, within TX73_010705 at 2337.112 kb on + strand, within TX73_010705 at 2337.202 kb on + strand, within TX73_010705 at 2337.212 kb on + strand, within TX73_010705 at 2337.215 kb on - strand, within TX73_010705 at 2337.224 kb on + strand, within TX73_010705 at 2337.224 kb on + strand, within TX73_010705 at 2337.229 kb on + strand, within TX73_010705 at 2337.229 kb on + strand, within TX73_010705 at 2337.229 kb on + strand, within TX73_010705 at 2337.229 kb on + strand, within TX73_010705 at 2337.237 kb on - strand, within TX73_010705 at 2337.239 kb on - strand, within TX73_010705 at 2337.242 kb on - strand, within TX73_010705 at 2337.257 kb on + strand, within TX73_010705 at 2337.284 kb on - strand, within TX73_010705 at 2337.323 kb on + strand, within TX73_010705 at 2337.376 kb on - strand, within TX73_010705 at 2337.406 kb on + strand, within TX73_010705 at 2337.479 kb on + strand, within TX73_010705 at 2337.503 kb on - strand, within TX73_010705 at 2337.645 kb on + strand at 2337.658 kb on - strand at 2337.687 kb on + strand at 2337.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic remove 2,335,280 - TX73_010690 0.78 -0.2 2,335,288 - TX73_010690 0.78 +0.0 2,335,290 + TX73_010690 0.78 -0.1 2,335,341 - TX73_010690 0.81 -0.3 2,335,394 + TX73_010690 0.84 -0.7 2,335,394 + TX73_010690 0.84 +0.1 2,335,426 + TX73_010690 0.86 +2.0 2,335,426 + TX73_010690 0.86 -0.6 2,335,441 - TX73_010690 0.86 +0.3 2,335,562 - +0.4 2,335,807 - TX73_010695 0.11 -0.3 2,335,826 - TX73_010695 0.20 -0.8 2,335,875 + TX73_010695 0.45 +1.3 2,335,997 - +0.3 2,336,143 + +1.1 2,336,169 - +0.1 2,336,187 + +0.5 2,336,243 + TX73_010700 0.17 -0.3 2,336,251 - TX73_010700 0.18 -0.3 2,336,326 - TX73_010700 0.29 +0.6 2,336,352 + TX73_010700 0.33 -0.2 2,336,381 + TX73_010700 0.38 -0.3 2,336,389 - TX73_010700 0.39 -0.3 2,336,393 + TX73_010700 0.39 +1.4 2,336,453 + TX73_010700 0.48 +0.7 2,336,513 + TX73_010700 0.57 +1.8 2,336,593 - TX73_010700 0.69 -0.1 2,336,685 + TX73_010700 0.82 +0.2 2,336,690 + TX73_010700 0.83 +0.8 2,336,693 - TX73_010700 0.84 +0.9 2,336,693 - TX73_010700 0.84 +0.1 2,336,703 - TX73_010700 0.85 +0.7 2,336,703 - TX73_010700 0.85 +0.5 2,336,727 - TX73_010700 0.89 -0.4 2,336,786 - -0.1 2,336,808 - -0.3 2,336,829 + +0.2 2,336,851 - -0.0 2,336,869 - -0.8 2,336,987 + TX73_010705 0.19 -0.2 2,337,112 + TX73_010705 0.33 +0.4 2,337,202 + TX73_010705 0.42 +0.1 2,337,212 + TX73_010705 0.43 -0.4 2,337,215 - TX73_010705 0.44 -0.5 2,337,224 + TX73_010705 0.45 -0.1 2,337,224 + TX73_010705 0.45 -0.7 2,337,229 + TX73_010705 0.45 -1.3 2,337,229 + TX73_010705 0.45 +0.7 2,337,229 + TX73_010705 0.45 -0.5 2,337,229 + TX73_010705 0.45 -0.4 2,337,237 - TX73_010705 0.46 -0.2 2,337,239 - TX73_010705 0.46 +0.2 2,337,242 - TX73_010705 0.47 +0.2 2,337,257 + TX73_010705 0.48 -0.0 2,337,284 - TX73_010705 0.51 +1.7 2,337,323 + TX73_010705 0.55 +0.3 2,337,376 - TX73_010705 0.61 -2.4 2,337,406 + TX73_010705 0.64 -1.0 2,337,479 + TX73_010705 0.72 +0.4 2,337,503 - TX73_010705 0.75 +0.7 2,337,645 + -0.8 2,337,658 - -0.3 2,337,687 + -0.1 2,337,733 - -0.0
Or see this region's nucleotide sequence