Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000170

Experiment: 4-Aminobutyric (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000160 and TX73_000165 are separated by 85 nucleotidesTX73_000165 and TX73_000170 are separated by 3 nucleotidesTX73_000170 and TX73_000175 are separated by 347 nucleotides TX73_000160: TX73_000160 - DUF1674 domain-containing protein, at 37,325 to 37,543 _000160 TX73_000165: TX73_000165 - thermonuclease family protein, at 37,629 to 38,204 _000165 TX73_000170: TX73_000170 - YiiX/YebB-like N1pC/P60 family cysteine hydrolase, at 38,208 to 39,092 _000170 TX73_000175: TX73_000175 - NAD(P)/FAD-dependent oxidoreductase, at 39,440 to 40,897 _000175 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.222 kb on - strandat 37.224 kb on + strandat 37.229 kb on + strandat 37.232 kb on - strandat 37.232 kb on - strandat 37.237 kb on - strandat 37.283 kb on + strandat 37.283 kb on + strandat 37.283 kb on + strandat 37.283 kb on + strandat 37.283 kb on + strandat 37.291 kb on - strandat 37.352 kb on + strand, within TX73_000160at 37.415 kb on + strand, within TX73_000160at 37.459 kb on + strand, within TX73_000160at 37.484 kb on - strand, within TX73_000160at 37.484 kb on - strand, within TX73_000160at 37.484 kb on - strand, within TX73_000160at 37.484 kb on - strand, within TX73_000160at 37.485 kb on + strand, within TX73_000160at 37.485 kb on + strand, within TX73_000160at 37.485 kb on + strand, within TX73_000160at 37.485 kb on + strand, within TX73_000160at 37.485 kb on + strand, within TX73_000160at 37.485 kb on - strand, within TX73_000160at 37.493 kb on - strand, within TX73_000160at 37.493 kb on - strand, within TX73_000160at 37.493 kb on - strand, within TX73_000160at 37.517 kb on + strand, within TX73_000160at 37.517 kb on + strand, within TX73_000160at 37.538 kb on + strandat 37.551 kb on - strandat 37.564 kb on - strandat 37.626 kb on + strandat 37.627 kb on + strandat 37.634 kb on - strandat 37.668 kb on - strandat 37.681 kb on - strandat 37.682 kb on - strandat 37.693 kb on + strand, within TX73_000165at 37.693 kb on + strand, within TX73_000165at 37.695 kb on + strand, within TX73_000165at 37.701 kb on - strand, within TX73_000165at 37.707 kb on + strand, within TX73_000165at 37.722 kb on - strand, within TX73_000165at 37.763 kb on + strand, within TX73_000165at 37.787 kb on + strand, within TX73_000165at 37.797 kb on + strand, within TX73_000165at 37.797 kb on + strand, within TX73_000165at 37.815 kb on + strand, within TX73_000165at 37.823 kb on - strand, within TX73_000165at 37.823 kb on - strand, within TX73_000165at 37.828 kb on + strand, within TX73_000165at 37.860 kb on - strand, within TX73_000165at 37.862 kb on + strand, within TX73_000165at 37.862 kb on + strand, within TX73_000165at 37.862 kb on + strand, within TX73_000165at 37.865 kb on + strand, within TX73_000165at 37.870 kb on - strand, within TX73_000165at 37.870 kb on - strand, within TX73_000165at 37.870 kb on - strand, within TX73_000165at 37.870 kb on - strand, within TX73_000165at 37.870 kb on - strand, within TX73_000165at 37.870 kb on - strand, within TX73_000165at 37.885 kb on + strand, within TX73_000165at 37.893 kb on - strand, within TX73_000165at 37.903 kb on + strand, within TX73_000165at 37.912 kb on - strand, within TX73_000165at 37.914 kb on + strand, within TX73_000165at 37.915 kb on + strand, within TX73_000165at 37.923 kb on - strand, within TX73_000165at 37.923 kb on - strand, within TX73_000165at 37.923 kb on - strand, within TX73_000165at 37.956 kb on - strand, within TX73_000165at 38.008 kb on + strand, within TX73_000165at 38.062 kb on - strand, within TX73_000165at 38.062 kb on - strand, within TX73_000165at 38.076 kb on + strand, within TX73_000165at 38.076 kb on + strand, within TX73_000165at 38.084 kb on - strand, within TX73_000165at 38.089 kb on - strand, within TX73_000165at 38.144 kb on - strand, within TX73_000165at 38.146 kb on - strand, within TX73_000165at 38.167 kb on + strandat 38.178 kb on + strandat 38.188 kb on + strandat 38.205 kb on + strandat 38.205 kb on + strandat 38.206 kb on + strandat 38.212 kb on - strandat 38.213 kb on - strandat 38.232 kb on - strandat 38.259 kb on + strandat 38.259 kb on + strandat 38.267 kb on - strandat 38.267 kb on - strandat 38.267 kb on - strandat 38.267 kb on - strandat 38.288 kb on + strandat 38.301 kb on - strand, within TX73_000170at 38.340 kb on - strand, within TX73_000170at 38.359 kb on + strand, within TX73_000170at 38.359 kb on + strand, within TX73_000170at 38.359 kb on + strand, within TX73_000170at 38.364 kb on + strand, within TX73_000170at 38.364 kb on + strand, within TX73_000170at 38.367 kb on - strand, within TX73_000170at 38.367 kb on - strand, within TX73_000170at 38.372 kb on - strand, within TX73_000170at 38.372 kb on - strand, within TX73_000170at 38.374 kb on + strand, within TX73_000170at 38.386 kb on - strand, within TX73_000170at 38.401 kb on + strand, within TX73_000170at 38.448 kb on + strand, within TX73_000170at 38.448 kb on + strand, within TX73_000170at 38.448 kb on + strand, within TX73_000170at 38.469 kb on + strand, within TX73_000170at 38.477 kb on - strand, within TX73_000170at 38.504 kb on - strand, within TX73_000170at 38.504 kb on - strand, within TX73_000170at 38.522 kb on + strand, within TX73_000170at 38.522 kb on + strand, within TX73_000170at 38.527 kb on + strand, within TX73_000170at 38.532 kb on - strand, within TX73_000170at 38.535 kb on - strand, within TX73_000170at 38.569 kb on - strand, within TX73_000170at 38.579 kb on - strand, within TX73_000170at 38.642 kb on + strand, within TX73_000170at 38.642 kb on + strand, within TX73_000170at 38.650 kb on - strand, within TX73_000170at 38.650 kb on - strand, within TX73_000170at 38.712 kb on + strand, within TX73_000170at 38.712 kb on + strand, within TX73_000170at 38.722 kb on + strand, within TX73_000170at 38.732 kb on + strand, within TX73_000170at 38.732 kb on + strand, within TX73_000170at 38.740 kb on - strand, within TX73_000170at 38.740 kb on - strand, within TX73_000170at 38.740 kb on - strand, within TX73_000170at 38.740 kb on - strand, within TX73_000170at 38.740 kb on - strand, within TX73_000170at 38.742 kb on - strand, within TX73_000170at 38.742 kb on - strand, within TX73_000170at 38.742 kb on - strand, within TX73_000170at 38.742 kb on - strand, within TX73_000170at 38.790 kb on - strand, within TX73_000170at 38.824 kb on + strand, within TX73_000170at 38.828 kb on + strand, within TX73_000170at 38.832 kb on - strand, within TX73_000170at 38.832 kb on - strand, within TX73_000170at 38.848 kb on + strand, within TX73_000170at 38.856 kb on + strand, within TX73_000170at 38.858 kb on + strand, within TX73_000170at 38.862 kb on - strand, within TX73_000170at 38.863 kb on - strand, within TX73_000170at 38.874 kb on - strand, within TX73_000170at 38.886 kb on - strand, within TX73_000170at 38.886 kb on - strand, within TX73_000170at 38.888 kb on - strand, within TX73_000170at 38.888 kb on - strand, within TX73_000170at 38.902 kb on - strand, within TX73_000170at 38.904 kb on + strand, within TX73_000170at 38.946 kb on - strand, within TX73_000170at 38.958 kb on - strand, within TX73_000170at 38.978 kb on + strand, within TX73_000170at 38.978 kb on + strand, within TX73_000170at 38.982 kb on - strand, within TX73_000170at 38.996 kb on + strand, within TX73_000170at 39.004 kb on - strandat 39.009 kb on - strandat 39.018 kb on - strandat 39.019 kb on - strandat 39.019 kb on - strandat 39.019 kb on - strandat 39.019 kb on - strandat 39.025 kb on + strandat 39.088 kb on - strandat 39.122 kb on - strandat 39.195 kb on + strandat 39.203 kb on - strandat 39.252 kb on - strandat 39.257 kb on + strandat 39.272 kb on + strandat 39.284 kb on - strandat 39.295 kb on - strandat 39.295 kb on - strandat 39.317 kb on - strandat 39.322 kb on - strandat 39.344 kb on + strandat 39.365 kb on - strandat 39.379 kb on + strandat 39.413 kb on - strandat 39.463 kb on + strandat 39.464 kb on + strandat 39.470 kb on + strandat 39.483 kb on - strandat 39.485 kb on + strandat 39.492 kb on + strandat 39.508 kb on + strandat 39.518 kb on - strandat 39.519 kb on + strandat 39.533 kb on + strandat 39.554 kb on - strandat 39.615 kb on + strand, within TX73_000175at 39.615 kb on + strand, within TX73_000175at 39.650 kb on - strand, within TX73_000175at 39.671 kb on - strand, within TX73_000175at 39.692 kb on + strand, within TX73_000175at 39.700 kb on - strand, within TX73_000175at 39.700 kb on - strand, within TX73_000175at 39.722 kb on - strand, within TX73_000175at 39.723 kb on + strand, within TX73_000175at 39.724 kb on - strand, within TX73_000175at 39.726 kb on - strand, within TX73_000175at 39.732 kb on - strand, within TX73_000175at 39.733 kb on - strand, within TX73_000175at 39.750 kb on - strand, within TX73_000175at 39.759 kb on + strand, within TX73_000175at 39.780 kb on + strand, within TX73_000175at 39.787 kb on - strand, within TX73_000175at 39.854 kb on + strand, within TX73_000175at 39.862 kb on - strand, within TX73_000175at 39.862 kb on - strand, within TX73_000175at 39.871 kb on - strand, within TX73_000175at 39.890 kb on - strand, within TX73_000175at 39.901 kb on + strand, within TX73_000175at 39.936 kb on - strand, within TX73_000175at 39.948 kb on + strand, within TX73_000175at 39.959 kb on + strand, within TX73_000175at 39.963 kb on + strand, within TX73_000175at 39.963 kb on + strand, within TX73_000175at 39.968 kb on + strand, within TX73_000175at 39.970 kb on + strand, within TX73_000175at 39.975 kb on + strand, within TX73_000175at 39.975 kb on + strand, within TX73_000175at 39.976 kb on - strand, within TX73_000175at 39.976 kb on - strand, within TX73_000175at 39.980 kb on + strand, within TX73_000175at 39.983 kb on - strand, within TX73_000175at 39.990 kb on + strand, within TX73_000175at 39.990 kb on + strand, within TX73_000175at 39.990 kb on + strand, within TX73_000175at 39.998 kb on - strand, within TX73_000175at 40.009 kb on + strand, within TX73_000175at 40.040 kb on - strand, within TX73_000175at 40.041 kb on + strand, within TX73_000175at 40.049 kb on + strand, within TX73_000175at 40.067 kb on - strand, within TX73_000175

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic
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37,222 - -0.4
37,224 + +1.7
37,229 + -0.1
37,232 - +0.2
37,232 - +1.4
37,237 - +1.2
37,283 + -0.4
37,283 + +0.3
37,283 + -0.6
37,283 + -0.3
37,283 + -0.3
37,291 - +0.1
37,352 + TX73_000160 0.12 -0.1
37,415 + TX73_000160 0.41 -1.9
37,459 + TX73_000160 0.61 +0.3
37,484 - TX73_000160 0.73 -0.5
37,484 - TX73_000160 0.73 -0.9
37,484 - TX73_000160 0.73 -0.1
37,484 - TX73_000160 0.73 -0.4
37,485 + TX73_000160 0.73 +0.2
37,485 + TX73_000160 0.73 -0.9
37,485 + TX73_000160 0.73 -0.3
37,485 + TX73_000160 0.73 +0.3
37,485 + TX73_000160 0.73 +0.1
37,485 - TX73_000160 0.73 +0.1
37,493 - TX73_000160 0.77 -0.2
37,493 - TX73_000160 0.77 -1.2
37,493 - TX73_000160 0.77 +1.4
37,517 + TX73_000160 0.88 +0.4
37,517 + TX73_000160 0.88 +0.5
37,538 + +0.0
37,551 - +0.5
37,564 - +0.9
37,626 + -0.1
37,627 + -0.1
37,634 - +0.1
37,668 - +0.1
37,681 - +0.8
37,682 - +0.1
37,693 + TX73_000165 0.11 -0.3
37,693 + TX73_000165 0.11 -0.0
37,695 + TX73_000165 0.11 -0.4
37,701 - TX73_000165 0.12 +0.7
37,707 + TX73_000165 0.14 -0.1
37,722 - TX73_000165 0.16 -0.2
37,763 + TX73_000165 0.23 +0.3
37,787 + TX73_000165 0.27 +1.6
37,797 + TX73_000165 0.29 +0.1
37,797 + TX73_000165 0.29 -0.3
37,815 + TX73_000165 0.32 +0.3
37,823 - TX73_000165 0.34 +0.9
37,823 - TX73_000165 0.34 -0.3
37,828 + TX73_000165 0.35 +0.4
37,860 - TX73_000165 0.40 +1.0
37,862 + TX73_000165 0.40 +0.5
37,862 + TX73_000165 0.40 +1.3
37,862 + TX73_000165 0.40 -0.2
37,865 + TX73_000165 0.41 -0.4
37,870 - TX73_000165 0.42 -0.3
37,870 - TX73_000165 0.42 +0.1
37,870 - TX73_000165 0.42 +0.7
37,870 - TX73_000165 0.42 -0.0
37,870 - TX73_000165 0.42 +0.6
37,870 - TX73_000165 0.42 +0.3
37,885 + TX73_000165 0.44 -0.0
37,893 - TX73_000165 0.46 -0.9
37,903 + TX73_000165 0.48 -0.8
37,912 - TX73_000165 0.49 -0.8
37,914 + TX73_000165 0.49 +0.5
37,915 + TX73_000165 0.50 +0.4
37,923 - TX73_000165 0.51 +0.7
37,923 - TX73_000165 0.51 -1.1
37,923 - TX73_000165 0.51 +0.8
37,956 - TX73_000165 0.57 -0.2
38,008 + TX73_000165 0.66 +0.6
38,062 - TX73_000165 0.75 +0.5
38,062 - TX73_000165 0.75 -0.7
38,076 + TX73_000165 0.78 -0.4
38,076 + TX73_000165 0.78 +0.9
38,084 - TX73_000165 0.79 +0.9
38,089 - TX73_000165 0.80 +0.3
38,144 - TX73_000165 0.89 +0.0
38,146 - TX73_000165 0.90 -0.6
38,167 + +0.1
38,178 + +0.1
38,188 + +0.0
38,205 + +0.6
38,205 + -0.9
38,206 + +0.8
38,212 - -0.4
38,213 - -0.3
38,232 - +0.7
38,259 + -0.0
38,259 + -0.2
38,267 - +0.9
38,267 - -0.2
38,267 - -0.5
38,267 - -0.3
38,288 + +0.7
38,301 - TX73_000170 0.11 +0.3
38,340 - TX73_000170 0.15 -0.7
38,359 + TX73_000170 0.17 -0.8
38,359 + TX73_000170 0.17 -0.2
38,359 + TX73_000170 0.17 +0.3
38,364 + TX73_000170 0.18 +0.0
38,364 + TX73_000170 0.18 -0.5
38,367 - TX73_000170 0.18 +0.4
38,367 - TX73_000170 0.18 -0.3
38,372 - TX73_000170 0.19 +0.9
38,372 - TX73_000170 0.19 +0.5
38,374 + TX73_000170 0.19 +0.5
38,386 - TX73_000170 0.20 +0.7
38,401 + TX73_000170 0.22 -0.3
38,448 + TX73_000170 0.27 +0.8
38,448 + TX73_000170 0.27 +0.2
38,448 + TX73_000170 0.27 +0.1
38,469 + TX73_000170 0.29 +0.7
38,477 - TX73_000170 0.30 +0.9
38,504 - TX73_000170 0.33 +0.5
38,504 - TX73_000170 0.33 -1.4
38,522 + TX73_000170 0.35 -0.8
38,522 + TX73_000170 0.35 -0.8
38,527 + TX73_000170 0.36 +0.3
38,532 - TX73_000170 0.37 -0.0
38,535 - TX73_000170 0.37 -1.8
38,569 - TX73_000170 0.41 -0.0
38,579 - TX73_000170 0.42 +0.8
38,642 + TX73_000170 0.49 -0.1
38,642 + TX73_000170 0.49 +0.7
38,650 - TX73_000170 0.50 +0.6
38,650 - TX73_000170 0.50 +1.0
38,712 + TX73_000170 0.57 +0.1
38,712 + TX73_000170 0.57 -0.1
38,722 + TX73_000170 0.58 +0.5
38,732 + TX73_000170 0.59 +0.3
38,732 + TX73_000170 0.59 -1.5
38,740 - TX73_000170 0.60 +0.2
38,740 - TX73_000170 0.60 -0.8
38,740 - TX73_000170 0.60 -0.5
38,740 - TX73_000170 0.60 +0.1
38,740 - TX73_000170 0.60 +0.2
38,742 - TX73_000170 0.60 +1.0
38,742 - TX73_000170 0.60 +0.3
38,742 - TX73_000170 0.60 -0.1
38,742 - TX73_000170 0.60 -0.1
38,790 - TX73_000170 0.66 -0.2
38,824 + TX73_000170 0.70 -0.1
38,828 + TX73_000170 0.70 +0.5
38,832 - TX73_000170 0.71 -0.3
38,832 - TX73_000170 0.71 +0.3
38,848 + TX73_000170 0.72 +0.3
38,856 + TX73_000170 0.73 +0.3
38,858 + TX73_000170 0.73 -1.5
38,862 - TX73_000170 0.74 +0.7
38,863 - TX73_000170 0.74 -0.2
38,874 - TX73_000170 0.75 -0.8
38,886 - TX73_000170 0.77 +0.3
38,886 - TX73_000170 0.77 -0.4
38,888 - TX73_000170 0.77 +0.1
38,888 - TX73_000170 0.77 -0.6
38,902 - TX73_000170 0.78 +1.0
38,904 + TX73_000170 0.79 +0.0
38,946 - TX73_000170 0.83 +0.0
38,958 - TX73_000170 0.85 +0.0
38,978 + TX73_000170 0.87 -0.9
38,978 + TX73_000170 0.87 -0.2
38,982 - TX73_000170 0.87 -0.6
38,996 + TX73_000170 0.89 -1.7
39,004 - -0.1
39,009 - +1.0
39,018 - -1.2
39,019 - +0.8
39,019 - +1.2
39,019 - +0.3
39,019 - -0.3
39,025 + +0.2
39,088 - +1.1
39,122 - +0.3
39,195 + -2.4
39,203 - -0.2
39,252 - -0.3
39,257 + -0.1
39,272 + +0.1
39,284 - -0.1
39,295 - +2.4
39,295 - -0.5
39,317 - -0.3
39,322 - -1.0
39,344 + +0.2
39,365 - +0.6
39,379 + -0.3
39,413 - +0.4
39,463 + -0.3
39,464 + -1.3
39,470 + -0.9
39,483 - +0.6
39,485 + -0.2
39,492 + +0.4
39,508 + -0.2
39,518 - -0.1
39,519 + +0.2
39,533 + -0.5
39,554 - -0.3
39,615 + TX73_000175 0.12 -0.1
39,615 + TX73_000175 0.12 +0.1
39,650 - TX73_000175 0.14 -0.5
39,671 - TX73_000175 0.16 -1.3
39,692 + TX73_000175 0.17 -1.5
39,700 - TX73_000175 0.18 -0.4
39,700 - TX73_000175 0.18 +1.1
39,722 - TX73_000175 0.19 -0.3
39,723 + TX73_000175 0.19 -0.9
39,724 - TX73_000175 0.19 -1.3
39,726 - TX73_000175 0.20 -1.3
39,732 - TX73_000175 0.20 -0.8
39,733 - TX73_000175 0.20 +0.5
39,750 - TX73_000175 0.21 -1.0
39,759 + TX73_000175 0.22 -0.9
39,780 + TX73_000175 0.23 +1.2
39,787 - TX73_000175 0.24 +0.2
39,854 + TX73_000175 0.28 +0.5
39,862 - TX73_000175 0.29 -1.4
39,862 - TX73_000175 0.29 -0.1
39,871 - TX73_000175 0.30 -1.4
39,890 - TX73_000175 0.31 -0.4
39,901 + TX73_000175 0.32 +0.2
39,936 - TX73_000175 0.34 +0.4
39,948 + TX73_000175 0.35 -0.4
39,959 + TX73_000175 0.36 +0.8
39,963 + TX73_000175 0.36 -0.0
39,963 + TX73_000175 0.36 -0.9
39,968 + TX73_000175 0.36 -0.6
39,970 + TX73_000175 0.36 -0.5
39,975 + TX73_000175 0.37 -0.3
39,975 + TX73_000175 0.37 -0.2
39,976 - TX73_000175 0.37 -0.0
39,976 - TX73_000175 0.37 -1.3
39,980 + TX73_000175 0.37 -1.0
39,983 - TX73_000175 0.37 +0.9
39,990 + TX73_000175 0.38 +0.1
39,990 + TX73_000175 0.38 +0.8
39,990 + TX73_000175 0.38 +0.3
39,998 - TX73_000175 0.38 +0.1
40,009 + TX73_000175 0.39 +0.2
40,040 - TX73_000175 0.41 -1.3
40,041 + TX73_000175 0.41 +0.9
40,049 + TX73_000175 0.42 -1.1
40,067 - TX73_000175 0.43 +0.2

Or see this region's nucleotide sequence