Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003200

Experiment: 4-Aminobutyric (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003190 and TX73_003195 are separated by 95 nucleotidesTX73_003195 and TX73_003200 are separated by 19 nucleotidesTX73_003200 and TX73_003205 are separated by 40 nucleotides TX73_003190: TX73_003190 - YbaB/EbfC family nucleoid-associated protein, at 684,543 to 684,863 _003190 TX73_003195: TX73_003195 - recombination mediator RecR, at 684,959 to 685,561 _003195 TX73_003200: TX73_003200 - hypothetical protein, at 685,581 to 686,009 _003200 TX73_003205: TX73_003205 - MFS transporter, at 686,050 to 687,348 _003205 Position (kb) 685 686 687Strain fitness (log2 ratio) -2 -1 0 1 2at 684.584 kb on - strand, within TX73_003190at 684.593 kb on + strand, within TX73_003190at 684.593 kb on + strand, within TX73_003190at 684.595 kb on - strand, within TX73_003190at 684.598 kb on + strand, within TX73_003190at 684.598 kb on + strand, within TX73_003190at 684.601 kb on - strand, within TX73_003190at 684.606 kb on - strand, within TX73_003190at 684.608 kb on + strand, within TX73_003190at 684.613 kb on + strand, within TX73_003190at 684.623 kb on + strand, within TX73_003190at 684.623 kb on + strand, within TX73_003190at 684.627 kb on - strand, within TX73_003190at 684.631 kb on - strand, within TX73_003190at 684.631 kb on - strand, within TX73_003190at 684.646 kb on + strand, within TX73_003190at 684.663 kb on + strand, within TX73_003190at 684.663 kb on + strand, within TX73_003190at 684.663 kb on + strand, within TX73_003190at 684.669 kb on - strand, within TX73_003190at 684.671 kb on - strand, within TX73_003190at 684.679 kb on + strand, within TX73_003190at 684.679 kb on + strand, within TX73_003190at 684.687 kb on - strand, within TX73_003190at 684.687 kb on - strand, within TX73_003190at 684.703 kb on - strand, within TX73_003190at 684.716 kb on + strand, within TX73_003190at 684.721 kb on + strand, within TX73_003190at 684.724 kb on - strand, within TX73_003190at 684.729 kb on - strand, within TX73_003190at 684.731 kb on + strand, within TX73_003190at 684.731 kb on - strand, within TX73_003190at 684.747 kb on + strand, within TX73_003190at 684.777 kb on - strand, within TX73_003190at 684.793 kb on - strand, within TX73_003190at 684.793 kb on - strand, within TX73_003190at 684.798 kb on + strand, within TX73_003190at 684.816 kb on + strand, within TX73_003190at 684.818 kb on - strand, within TX73_003190at 684.829 kb on + strand, within TX73_003190at 684.829 kb on + strand, within TX73_003190at 684.847 kb on + strandat 684.855 kb on - strandat 684.858 kb on + strandat 684.860 kb on - strandat 684.861 kb on - strandat 684.861 kb on - strandat 684.863 kb on + strandat 684.865 kb on - strandat 684.865 kb on - strandat 684.865 kb on - strandat 684.885 kb on + strandat 684.893 kb on - strandat 684.893 kb on - strandat 684.918 kb on - strandat 684.923 kb on + strandat 684.934 kb on + strandat 684.934 kb on + strandat 684.947 kb on - strandat 684.947 kb on - strandat 684.952 kb on - strandat 684.955 kb on + strandat 684.955 kb on + strandat 685.054 kb on + strand, within TX73_003195at 685.095 kb on + strand, within TX73_003195at 685.132 kb on + strand, within TX73_003195at 685.209 kb on + strand, within TX73_003195at 685.370 kb on - strand, within TX73_003195at 685.417 kb on - strand, within TX73_003195at 685.422 kb on + strand, within TX73_003195at 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.555 kb on + strandat 685.563 kb on - strandat 685.563 kb on - strandat 685.563 kb on - strandat 685.568 kb on - strandat 685.569 kb on + strandat 685.601 kb on - strandat 685.639 kb on + strand, within TX73_003200at 685.647 kb on - strand, within TX73_003200at 685.647 kb on - strand, within TX73_003200at 685.655 kb on - strand, within TX73_003200at 685.678 kb on - strand, within TX73_003200at 685.691 kb on + strand, within TX73_003200at 685.701 kb on + strand, within TX73_003200at 685.765 kb on - strand, within TX73_003200at 685.772 kb on + strand, within TX73_003200at 685.779 kb on + strand, within TX73_003200at 685.780 kb on - strand, within TX73_003200at 685.819 kb on + strand, within TX73_003200at 685.829 kb on + strand, within TX73_003200at 685.836 kb on + strand, within TX73_003200at 685.837 kb on - strand, within TX73_003200at 685.843 kb on - strand, within TX73_003200at 685.880 kb on + strand, within TX73_003200at 685.893 kb on - strand, within TX73_003200at 685.895 kb on + strand, within TX73_003200at 685.895 kb on + strand, within TX73_003200at 685.895 kb on + strand, within TX73_003200at 685.924 kb on + strand, within TX73_003200at 685.924 kb on + strand, within TX73_003200at 685.924 kb on + strand, within TX73_003200at 685.934 kb on - strand, within TX73_003200at 685.936 kb on + strand, within TX73_003200at 685.962 kb on + strand, within TX73_003200at 685.962 kb on + strand, within TX73_003200at 685.962 kb on + strand, within TX73_003200at 685.965 kb on - strand, within TX73_003200at 686.020 kb on + strandat 686.030 kb on - strandat 686.045 kb on - strandat 686.056 kb on - strandat 686.089 kb on + strandat 686.117 kb on - strandat 686.144 kb on - strandat 686.144 kb on - strandat 686.178 kb on + strandat 686.225 kb on + strand, within TX73_003205at 686.228 kb on - strand, within TX73_003205at 686.230 kb on + strand, within TX73_003205at 686.252 kb on - strand, within TX73_003205at 686.254 kb on + strand, within TX73_003205at 686.372 kb on + strand, within TX73_003205at 686.407 kb on + strand, within TX73_003205at 686.407 kb on + strand, within TX73_003205at 686.415 kb on - strand, within TX73_003205at 686.415 kb on - strand, within TX73_003205at 686.415 kb on - strand, within TX73_003205at 686.439 kb on + strand, within TX73_003205at 686.441 kb on + strand, within TX73_003205at 686.444 kb on + strand, within TX73_003205at 686.452 kb on - strand, within TX73_003205at 686.485 kb on + strand, within TX73_003205at 686.485 kb on - strand, within TX73_003205at 686.487 kb on + strand, within TX73_003205at 686.562 kb on + strand, within TX73_003205at 686.562 kb on + strand, within TX73_003205at 686.602 kb on - strand, within TX73_003205at 686.604 kb on + strand, within TX73_003205at 686.607 kb on - strand, within TX73_003205at 686.622 kb on - strand, within TX73_003205at 686.662 kb on + strand, within TX73_003205at 686.662 kb on + strand, within TX73_003205at 686.670 kb on - strand, within TX73_003205at 686.672 kb on + strand, within TX73_003205at 686.733 kb on + strand, within TX73_003205at 686.744 kb on + strand, within TX73_003205at 686.744 kb on + strand, within TX73_003205at 686.752 kb on - strand, within TX73_003205at 686.765 kb on + strand, within TX73_003205at 686.770 kb on + strand, within TX73_003205at 686.790 kb on + strand, within TX73_003205at 686.798 kb on - strand, within TX73_003205at 686.798 kb on - strand, within TX73_003205at 686.798 kb on - strand, within TX73_003205at 686.798 kb on - strand, within TX73_003205at 686.798 kb on - strand, within TX73_003205at 686.798 kb on - strand, within TX73_003205at 686.801 kb on - strand, within TX73_003205at 686.808 kb on + strand, within TX73_003205at 686.809 kb on - strand, within TX73_003205at 686.837 kb on - strand, within TX73_003205at 686.846 kb on + strand, within TX73_003205at 686.881 kb on + strand, within TX73_003205at 686.911 kb on - strand, within TX73_003205at 686.916 kb on - strand, within TX73_003205at 686.947 kb on + strand, within TX73_003205at 686.947 kb on + strand, within TX73_003205at 686.948 kb on + strand, within TX73_003205at 686.963 kb on + strand, within TX73_003205at 686.985 kb on - strand, within TX73_003205at 687.001 kb on + strand, within TX73_003205at 687.009 kb on - strand, within TX73_003205

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic
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684,584 - TX73_003190 0.13 +1.0
684,593 + TX73_003190 0.16 -0.4
684,593 + TX73_003190 0.16 -0.9
684,595 - TX73_003190 0.16 -1.1
684,598 + TX73_003190 0.17 -1.1
684,598 + TX73_003190 0.17 -0.1
684,601 - TX73_003190 0.18 +0.2
684,606 - TX73_003190 0.20 +0.5
684,608 + TX73_003190 0.20 +2.5
684,613 + TX73_003190 0.22 -0.1
684,623 + TX73_003190 0.25 -0.2
684,623 + TX73_003190 0.25 +0.1
684,627 - TX73_003190 0.26 +0.3
684,631 - TX73_003190 0.27 -1.0
684,631 - TX73_003190 0.27 -1.4
684,646 + TX73_003190 0.32 -0.8
684,663 + TX73_003190 0.37 -2.7
684,663 + TX73_003190 0.37 -0.6
684,663 + TX73_003190 0.37 +1.2
684,669 - TX73_003190 0.39 +0.4
684,671 - TX73_003190 0.40 +1.1
684,679 + TX73_003190 0.42 -0.2
684,679 + TX73_003190 0.42 +0.5
684,687 - TX73_003190 0.45 -1.3
684,687 - TX73_003190 0.45 -0.4
684,703 - TX73_003190 0.50 +0.1
684,716 + TX73_003190 0.54 +0.9
684,721 + TX73_003190 0.55 +0.6
684,724 - TX73_003190 0.56 +0.3
684,729 - TX73_003190 0.58 +1.3
684,731 + TX73_003190 0.59 -0.1
684,731 - TX73_003190 0.59 +0.4
684,747 + TX73_003190 0.64 +0.3
684,777 - TX73_003190 0.73 +0.0
684,793 - TX73_003190 0.78 -0.7
684,793 - TX73_003190 0.78 -0.2
684,798 + TX73_003190 0.79 +0.8
684,816 + TX73_003190 0.85 -1.0
684,818 - TX73_003190 0.86 -0.2
684,829 + TX73_003190 0.89 -1.2
684,829 + TX73_003190 0.89 -0.1
684,847 + -0.2
684,855 - +0.3
684,858 + -0.6
684,860 - +0.6
684,861 - -0.6
684,861 - -0.5
684,863 + +0.6
684,865 - +0.4
684,865 - +0.3
684,865 - +0.7
684,885 + +0.5
684,893 - -0.2
684,893 - +0.5
684,918 - -0.4
684,923 + -0.1
684,934 + -0.8
684,934 + +0.0
684,947 - -1.2
684,947 - -0.3
684,952 - +0.2
684,955 + +0.3
684,955 + +0.5
685,054 + TX73_003195 0.16 +0.5
685,095 + TX73_003195 0.23 -0.1
685,132 + TX73_003195 0.29 -0.5
685,209 + TX73_003195 0.41 -0.8
685,370 - TX73_003195 0.68 -0.5
685,417 - TX73_003195 0.76 +0.5
685,422 + TX73_003195 0.77 -0.5
685,555 + +1.7
685,555 + +0.9
685,555 + -0.2
685,555 + -1.3
685,555 + +1.5
685,555 + +0.2
685,563 - -0.9
685,563 - +0.0
685,563 - +0.4
685,568 - -0.0
685,569 + +0.0
685,601 - +0.2
685,639 + TX73_003200 0.14 -0.2
685,647 - TX73_003200 0.15 +0.3
685,647 - TX73_003200 0.15 +1.7
685,655 - TX73_003200 0.17 +1.3
685,678 - TX73_003200 0.23 +0.4
685,691 + TX73_003200 0.26 +0.7
685,701 + TX73_003200 0.28 +1.5
685,765 - TX73_003200 0.43 -0.3
685,772 + TX73_003200 0.45 -0.3
685,779 + TX73_003200 0.46 +0.1
685,780 - TX73_003200 0.46 +0.3
685,819 + TX73_003200 0.55 +0.8
685,829 + TX73_003200 0.58 +0.2
685,836 + TX73_003200 0.59 -0.2
685,837 - TX73_003200 0.60 +0.8
685,843 - TX73_003200 0.61 +1.5
685,880 + TX73_003200 0.70 -0.1
685,893 - TX73_003200 0.73 +0.3
685,895 + TX73_003200 0.73 -0.8
685,895 + TX73_003200 0.73 -1.3
685,895 + TX73_003200 0.73 +1.5
685,924 + TX73_003200 0.80 +0.4
685,924 + TX73_003200 0.80 +1.3
685,924 + TX73_003200 0.80 +2.2
685,934 - TX73_003200 0.82 +0.3
685,936 + TX73_003200 0.83 -0.1
685,962 + TX73_003200 0.89 +1.3
685,962 + TX73_003200 0.89 -0.2
685,962 + TX73_003200 0.89 +0.9
685,965 - TX73_003200 0.90 -0.3
686,020 + -0.3
686,030 - -0.4
686,045 - +0.0
686,056 - +0.3
686,089 + +0.7
686,117 - -0.6
686,144 - +0.9
686,144 - -0.0
686,178 + -0.2
686,225 + TX73_003205 0.13 -0.2
686,228 - TX73_003205 0.14 +0.5
686,230 + TX73_003205 0.14 +0.7
686,252 - TX73_003205 0.16 -0.5
686,254 + TX73_003205 0.16 +0.7
686,372 + TX73_003205 0.25 -0.5
686,407 + TX73_003205 0.27 +0.1
686,407 + TX73_003205 0.27 -0.5
686,415 - TX73_003205 0.28 -0.5
686,415 - TX73_003205 0.28 +0.9
686,415 - TX73_003205 0.28 +0.0
686,439 + TX73_003205 0.30 -0.2
686,441 + TX73_003205 0.30 -0.4
686,444 + TX73_003205 0.30 +0.4
686,452 - TX73_003205 0.31 -0.6
686,485 + TX73_003205 0.33 +1.2
686,485 - TX73_003205 0.33 -0.7
686,487 + TX73_003205 0.34 +0.8
686,562 + TX73_003205 0.39 +2.1
686,562 + TX73_003205 0.39 -0.7
686,602 - TX73_003205 0.42 +1.0
686,604 + TX73_003205 0.43 +0.5
686,607 - TX73_003205 0.43 +0.4
686,622 - TX73_003205 0.44 -1.6
686,662 + TX73_003205 0.47 -0.5
686,662 + TX73_003205 0.47 -0.2
686,670 - TX73_003205 0.48 -1.5
686,672 + TX73_003205 0.48 -1.0
686,733 + TX73_003205 0.53 +0.0
686,744 + TX73_003205 0.53 -0.3
686,744 + TX73_003205 0.53 +0.9
686,752 - TX73_003205 0.54 -0.2
686,765 + TX73_003205 0.55 +0.6
686,770 + TX73_003205 0.55 +0.2
686,790 + TX73_003205 0.57 -0.9
686,798 - TX73_003205 0.58 -0.5
686,798 - TX73_003205 0.58 +0.4
686,798 - TX73_003205 0.58 +0.0
686,798 - TX73_003205 0.58 +1.1
686,798 - TX73_003205 0.58 +0.4
686,798 - TX73_003205 0.58 -0.8
686,801 - TX73_003205 0.58 -1.2
686,808 + TX73_003205 0.58 -0.5
686,809 - TX73_003205 0.58 -0.7
686,837 - TX73_003205 0.61 +0.4
686,846 + TX73_003205 0.61 +1.5
686,881 + TX73_003205 0.64 +0.2
686,911 - TX73_003205 0.66 -0.1
686,916 - TX73_003205 0.67 +0.0
686,947 + TX73_003205 0.69 +1.8
686,947 + TX73_003205 0.69 -0.6
686,948 + TX73_003205 0.69 +0.2
686,963 + TX73_003205 0.70 -0.5
686,985 - TX73_003205 0.72 -0.5
687,001 + TX73_003205 0.73 +0.2
687,009 - TX73_003205 0.74 +0.1

Or see this region's nucleotide sequence