Experiment: 4-Aminobutyric (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001890 and TX73_001895 are separated by 98 nucleotides TX73_001895 and TX73_001900 are separated by 209 nucleotides TX73_001900 and TX73_001905 are separated by 221 nucleotides
TX73_001890: TX73_001890 - MBL fold metallo-hydrolase, at 395,641 to 396,537
_001890
TX73_001895: TX73_001895 - hypothetical protein, at 396,636 to 396,998
_001895
TX73_001900: TX73_001900 - RNA polymerase sigma factor RpoH, at 397,208 to 398,107
_001900
TX73_001905: TX73_001905 - RluA family pseudouridine synthase, at 398,329 to 399,303
_001905
Position (kb) 397
398
399 Strain fitness (log2 ratio) -2
-1
0
1
2 at 396.209 kb on - strand, within TX73_001890 at 396.211 kb on + strand, within TX73_001890 at 396.235 kb on + strand, within TX73_001890 at 396.243 kb on - strand, within TX73_001890 at 396.243 kb on - strand, within TX73_001890 at 396.244 kb on + strand, within TX73_001890 at 396.263 kb on + strand, within TX73_001890 at 396.284 kb on + strand, within TX73_001890 at 396.293 kb on - strand, within TX73_001890 at 396.294 kb on - strand, within TX73_001890 at 396.310 kb on - strand, within TX73_001890 at 396.320 kb on - strand, within TX73_001890 at 396.349 kb on - strand, within TX73_001890 at 396.362 kb on + strand, within TX73_001890 at 396.394 kb on + strand, within TX73_001890 at 396.402 kb on - strand, within TX73_001890 at 396.402 kb on - strand, within TX73_001890 at 396.432 kb on + strand, within TX73_001890 at 396.438 kb on + strand, within TX73_001890 at 396.438 kb on + strand, within TX73_001890 at 396.468 kb on + strand at 396.468 kb on + strand at 396.468 kb on + strand at 396.476 kb on - strand at 396.476 kb on - strand at 396.476 kb on - strand at 396.489 kb on + strand at 396.489 kb on + strand at 396.493 kb on - strand at 396.497 kb on - strand at 396.527 kb on + strand at 396.570 kb on + strand at 396.580 kb on + strand at 396.587 kb on + strand at 396.588 kb on - strand at 396.588 kb on - strand at 396.588 kb on - strand at 396.590 kb on - strand at 396.594 kb on + strand at 396.595 kb on - strand at 396.595 kb on - strand at 396.621 kb on - strand at 396.644 kb on + strand at 396.644 kb on + strand at 396.646 kb on - strand at 396.652 kb on - strand at 396.652 kb on - strand at 396.679 kb on - strand, within TX73_001895 at 396.710 kb on + strand, within TX73_001895 at 396.718 kb on - strand, within TX73_001895 at 396.718 kb on - strand, within TX73_001895 at 396.739 kb on - strand, within TX73_001895 at 396.773 kb on + strand, within TX73_001895 at 396.795 kb on + strand, within TX73_001895 at 396.815 kb on + strand, within TX73_001895 at 396.823 kb on - strand, within TX73_001895 at 396.823 kb on - strand, within TX73_001895 at 396.845 kb on + strand, within TX73_001895 at 396.890 kb on + strand, within TX73_001895 at 396.890 kb on + strand, within TX73_001895 at 396.896 kb on + strand, within TX73_001895 at 396.965 kb on - strand at 396.971 kb on + strand at 396.976 kb on - strand at 397.002 kb on - strand at 397.052 kb on - strand at 397.064 kb on + strand at 397.074 kb on + strand at 397.112 kb on - strand at 397.123 kb on + strand at 397.123 kb on + strand at 397.142 kb on - strand at 397.171 kb on + strand at 397.176 kb on + strand at 397.184 kb on - strand at 397.185 kb on + strand at 397.185 kb on + strand at 397.190 kb on + strand at 397.190 kb on + strand at 397.191 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.213 kb on + strand at 397.218 kb on + strand at 397.218 kb on + strand at 397.253 kb on + strand at 397.261 kb on - strand at 397.261 kb on - strand at 397.266 kb on + strand at 397.271 kb on - strand at 397.273 kb on - strand at 398.114 kb on - strand at 398.114 kb on - strand at 398.134 kb on + strand at 398.161 kb on - strand at 398.177 kb on - strand at 398.178 kb on + strand at 398.201 kb on - strand at 398.201 kb on - strand at 398.201 kb on - strand at 398.202 kb on - strand at 398.205 kb on + strand at 398.283 kb on + strand at 398.324 kb on + strand at 398.351 kb on + strand at 398.358 kb on - strand at 398.359 kb on - strand at 398.359 kb on - strand at 398.359 kb on - strand at 398.365 kb on - strand at 398.374 kb on + strand at 398.388 kb on - strand at 398.388 kb on - strand at 398.392 kb on + strand at 398.392 kb on + strand at 398.395 kb on - strand at 398.400 kb on - strand at 398.400 kb on - strand at 398.400 kb on - strand at 398.400 kb on - strand at 398.400 kb on - strand at 398.400 kb on - strand at 398.407 kb on + strand at 398.408 kb on + strand at 398.416 kb on - strand at 398.416 kb on - strand at 398.416 kb on - strand at 398.418 kb on + strand at 398.428 kb on + strand, within TX73_001905 at 398.453 kb on + strand, within TX73_001905 at 398.454 kb on + strand, within TX73_001905 at 398.454 kb on + strand, within TX73_001905 at 398.481 kb on + strand, within TX73_001905 at 398.481 kb on + strand, within TX73_001905 at 398.496 kb on + strand, within TX73_001905 at 398.503 kb on - strand, within TX73_001905 at 398.504 kb on - strand, within TX73_001905 at 398.507 kb on + strand, within TX73_001905 at 398.507 kb on + strand, within TX73_001905 at 398.507 kb on + strand, within TX73_001905 at 398.507 kb on + strand, within TX73_001905 at 398.514 kb on - strand, within TX73_001905 at 398.515 kb on - strand, within TX73_001905 at 398.515 kb on - strand, within TX73_001905 at 398.515 kb on - strand, within TX73_001905 at 398.515 kb on - strand, within TX73_001905 at 398.515 kb on - strand, within TX73_001905 at 398.515 kb on - strand, within TX73_001905 at 398.515 kb on - strand, within TX73_001905 at 398.520 kb on + strand, within TX73_001905 at 398.520 kb on + strand, within TX73_001905 at 398.520 kb on + strand, within TX73_001905 at 398.537 kb on - strand, within TX73_001905 at 398.539 kb on + strand, within TX73_001905 at 398.544 kb on + strand, within TX73_001905 at 398.544 kb on + strand, within TX73_001905 at 398.552 kb on - strand, within TX73_001905 at 398.559 kb on - strand, within TX73_001905 at 398.564 kb on + strand, within TX73_001905 at 398.575 kb on + strand, within TX73_001905 at 398.575 kb on + strand, within TX73_001905 at 398.575 kb on + strand, within TX73_001905 at 398.575 kb on + strand, within TX73_001905 at 398.575 kb on + strand, within TX73_001905 at 398.583 kb on - strand, within TX73_001905 at 398.583 kb on - strand, within TX73_001905 at 398.588 kb on - strand, within TX73_001905 at 398.594 kb on + strand, within TX73_001905 at 398.594 kb on + strand, within TX73_001905 at 398.602 kb on - strand, within TX73_001905 at 398.602 kb on - strand, within TX73_001905 at 398.602 kb on - strand, within TX73_001905 at 398.602 kb on - strand, within TX73_001905 at 398.621 kb on + strand, within TX73_001905 at 398.687 kb on - strand, within TX73_001905 at 398.689 kb on + strand, within TX73_001905 at 398.689 kb on + strand, within TX73_001905 at 398.690 kb on + strand, within TX73_001905 at 398.705 kb on + strand, within TX73_001905 at 398.720 kb on + strand, within TX73_001905 at 398.732 kb on - strand, within TX73_001905 at 398.732 kb on - strand, within TX73_001905 at 398.735 kb on + strand, within TX73_001905 at 398.747 kb on + strand, within TX73_001905 at 398.764 kb on + strand, within TX73_001905 at 398.774 kb on + strand, within TX73_001905 at 398.774 kb on + strand, within TX73_001905 at 398.774 kb on + strand, within TX73_001905 at 398.779 kb on + strand, within TX73_001905 at 398.781 kb on - strand, within TX73_001905 at 398.782 kb on - strand, within TX73_001905 at 398.782 kb on - strand, within TX73_001905 at 398.787 kb on - strand, within TX73_001905 at 398.803 kb on + strand, within TX73_001905 at 398.805 kb on + strand, within TX73_001905 at 398.840 kb on + strand, within TX73_001905 at 398.848 kb on - strand, within TX73_001905 at 398.848 kb on - strand, within TX73_001905 at 398.855 kb on + strand, within TX73_001905 at 398.855 kb on + strand, within TX73_001905 at 398.901 kb on - strand, within TX73_001905 at 398.915 kb on + strand, within TX73_001905 at 398.915 kb on + strand, within TX73_001905 at 398.923 kb on - strand, within TX73_001905 at 398.923 kb on - strand, within TX73_001905 at 398.923 kb on - strand, within TX73_001905 at 398.929 kb on + strand, within TX73_001905 at 398.933 kb on + strand, within TX73_001905 at 398.938 kb on - strand, within TX73_001905 at 398.939 kb on + strand, within TX73_001905 at 398.947 kb on - strand, within TX73_001905 at 398.949 kb on + strand, within TX73_001905 at 398.955 kb on - strand, within TX73_001905 at 398.957 kb on - strand, within TX73_001905 at 398.968 kb on + strand, within TX73_001905 at 398.977 kb on - strand, within TX73_001905 at 398.983 kb on - strand, within TX73_001905 at 398.988 kb on - strand, within TX73_001905 at 399.012 kb on + strand, within TX73_001905 at 399.018 kb on + strand, within TX73_001905 at 399.019 kb on - strand, within TX73_001905 at 399.024 kb on - strand, within TX73_001905 at 399.026 kb on - strand, within TX73_001905 at 399.026 kb on - strand, within TX73_001905 at 399.037 kb on + strand, within TX73_001905 at 399.060 kb on + strand, within TX73_001905 at 399.073 kb on + strand, within TX73_001905 at 399.081 kb on - strand, within TX73_001905 at 399.103 kb on + strand, within TX73_001905
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic remove 396,209 - TX73_001890 0.63 -0.4 396,211 + TX73_001890 0.64 -0.2 396,235 + TX73_001890 0.66 +0.4 396,243 - TX73_001890 0.67 -0.0 396,243 - TX73_001890 0.67 +0.4 396,244 + TX73_001890 0.67 -0.8 396,263 + TX73_001890 0.69 -0.5 396,284 + TX73_001890 0.72 -0.8 396,293 - TX73_001890 0.73 +0.1 396,294 - TX73_001890 0.73 +0.4 396,310 - TX73_001890 0.75 -0.2 396,320 - TX73_001890 0.76 -0.4 396,349 - TX73_001890 0.79 +0.6 396,362 + TX73_001890 0.80 +0.5 396,394 + TX73_001890 0.84 -0.2 396,402 - TX73_001890 0.85 -1.2 396,402 - TX73_001890 0.85 +0.0 396,432 + TX73_001890 0.88 -0.3 396,438 + TX73_001890 0.89 -0.6 396,438 + TX73_001890 0.89 +0.5 396,468 + -0.3 396,468 + -0.5 396,468 + +0.0 396,476 - +0.5 396,476 - +0.3 396,476 - -0.1 396,489 + +0.6 396,489 + +0.4 396,493 - +0.4 396,497 - +0.8 396,527 + -2.1 396,570 + -0.8 396,580 + -1.0 396,587 + +0.4 396,588 - +0.3 396,588 - -0.0 396,588 - +0.6 396,590 - +0.2 396,594 + -0.5 396,595 - +0.4 396,595 - +0.1 396,621 - -0.0 396,644 + +0.3 396,644 + -2.4 396,646 - +0.7 396,652 - +0.7 396,652 - +1.4 396,679 - TX73_001895 0.12 -1.2 396,710 + TX73_001895 0.20 -0.6 396,718 - TX73_001895 0.23 -0.2 396,718 - TX73_001895 0.23 -1.0 396,739 - TX73_001895 0.28 +0.2 396,773 + TX73_001895 0.38 -0.0 396,795 + TX73_001895 0.44 -0.6 396,815 + TX73_001895 0.49 -0.6 396,823 - TX73_001895 0.52 +1.3 396,823 - TX73_001895 0.52 +0.4 396,845 + TX73_001895 0.58 +0.8 396,890 + TX73_001895 0.70 +0.6 396,890 + TX73_001895 0.70 +0.4 396,896 + TX73_001895 0.72 -0.0 396,965 - -1.4 396,971 + -0.6 396,976 - -0.3 397,002 - -0.2 397,052 - +0.2 397,064 + +0.8 397,074 + -0.6 397,112 - -0.3 397,123 + +0.7 397,123 + +1.3 397,142 - -0.2 397,171 + -0.4 397,176 + -0.2 397,184 - +0.6 397,185 + -0.4 397,185 + +0.1 397,190 + -0.3 397,190 + +1.1 397,191 - +0.7 397,193 - +0.2 397,193 - -0.1 397,193 - -0.2 397,193 - +0.4 397,193 - -1.1 397,213 + +0.2 397,218 + -0.8 397,218 + -0.9 397,253 + -1.5 397,261 - -0.8 397,261 - -0.3 397,266 + -0.3 397,271 - -0.6 397,273 - -1.1 398,114 - -0.2 398,114 - +0.7 398,134 + -0.1 398,161 - +0.5 398,177 - -1.2 398,178 + +0.0 398,201 - -0.1 398,201 - +0.5 398,201 - -0.2 398,202 - +0.1 398,205 + +0.1 398,283 + -0.9 398,324 + -0.7 398,351 + -0.3 398,358 - +0.4 398,359 - +0.0 398,359 - +0.8 398,359 - -0.9 398,365 - +1.2 398,374 + -0.3 398,388 - +1.3 398,388 - +0.6 398,392 + +0.6 398,392 + -0.1 398,395 - -1.0 398,400 - +0.4 398,400 - -0.7 398,400 - +1.1 398,400 - +0.4 398,400 - +0.4 398,400 - +0.4 398,407 + -0.4 398,408 + -0.3 398,416 - -0.4 398,416 - +1.2 398,416 - +1.1 398,418 + +1.1 398,428 + TX73_001905 0.10 +0.8 398,453 + TX73_001905 0.13 +0.8 398,454 + TX73_001905 0.13 +0.1 398,454 + TX73_001905 0.13 +0.6 398,481 + TX73_001905 0.16 +0.8 398,481 + TX73_001905 0.16 -0.9 398,496 + TX73_001905 0.17 +0.4 398,503 - TX73_001905 0.18 +0.5 398,504 - TX73_001905 0.18 +2.0 398,507 + TX73_001905 0.18 +0.8 398,507 + TX73_001905 0.18 -0.0 398,507 + TX73_001905 0.18 -0.6 398,507 + TX73_001905 0.18 +0.3 398,514 - TX73_001905 0.19 -0.1 398,515 - TX73_001905 0.19 -0.2 398,515 - TX73_001905 0.19 +0.1 398,515 - TX73_001905 0.19 -0.2 398,515 - TX73_001905 0.19 -0.0 398,515 - TX73_001905 0.19 +0.8 398,515 - TX73_001905 0.19 +0.1 398,515 - TX73_001905 0.19 -0.6 398,520 + TX73_001905 0.20 -0.9 398,520 + TX73_001905 0.20 +1.2 398,520 + TX73_001905 0.20 +2.2 398,537 - TX73_001905 0.21 +0.9 398,539 + TX73_001905 0.22 +0.9 398,544 + TX73_001905 0.22 +1.4 398,544 + TX73_001905 0.22 +0.9 398,552 - TX73_001905 0.23 +0.2 398,559 - TX73_001905 0.24 +0.6 398,564 + TX73_001905 0.24 -0.8 398,575 + TX73_001905 0.25 +0.8 398,575 + TX73_001905 0.25 -0.0 398,575 + TX73_001905 0.25 +1.2 398,575 + TX73_001905 0.25 +0.7 398,575 + TX73_001905 0.25 +0.6 398,583 - TX73_001905 0.26 +1.0 398,583 - TX73_001905 0.26 +0.3 398,588 - TX73_001905 0.27 +1.2 398,594 + TX73_001905 0.27 -0.0 398,594 + TX73_001905 0.27 +0.3 398,602 - TX73_001905 0.28 -0.0 398,602 - TX73_001905 0.28 +0.6 398,602 - TX73_001905 0.28 +0.7 398,602 - TX73_001905 0.28 +0.6 398,621 + TX73_001905 0.30 -0.1 398,687 - TX73_001905 0.37 -0.9 398,689 + TX73_001905 0.37 +1.9 398,689 + TX73_001905 0.37 +0.7 398,690 + TX73_001905 0.37 +0.5 398,705 + TX73_001905 0.39 +0.4 398,720 + TX73_001905 0.40 -0.0 398,732 - TX73_001905 0.41 +2.0 398,732 - TX73_001905 0.41 +0.3 398,735 + TX73_001905 0.42 +0.3 398,747 + TX73_001905 0.43 +1.1 398,764 + TX73_001905 0.45 +0.0 398,774 + TX73_001905 0.46 +0.8 398,774 + TX73_001905 0.46 -0.0 398,774 + TX73_001905 0.46 +0.7 398,779 + TX73_001905 0.46 +0.4 398,781 - TX73_001905 0.46 +1.4 398,782 - TX73_001905 0.46 +1.2 398,782 - TX73_001905 0.46 +0.4 398,787 - TX73_001905 0.47 -0.4 398,803 + TX73_001905 0.49 +0.3 398,805 + TX73_001905 0.49 -0.2 398,840 + TX73_001905 0.52 +0.2 398,848 - TX73_001905 0.53 +0.3 398,848 - TX73_001905 0.53 -0.0 398,855 + TX73_001905 0.54 -0.6 398,855 + TX73_001905 0.54 +0.4 398,901 - TX73_001905 0.59 +0.8 398,915 + TX73_001905 0.60 +0.8 398,915 + TX73_001905 0.60 -0.0 398,923 - TX73_001905 0.61 +1.1 398,923 - TX73_001905 0.61 +0.5 398,923 - TX73_001905 0.61 +0.4 398,929 + TX73_001905 0.62 +0.3 398,933 + TX73_001905 0.62 -0.0 398,938 - TX73_001905 0.62 +0.4 398,939 + TX73_001905 0.63 +1.1 398,947 - TX73_001905 0.63 +0.6 398,949 + TX73_001905 0.64 -0.3 398,955 - TX73_001905 0.64 +0.1 398,957 - TX73_001905 0.64 +0.5 398,968 + TX73_001905 0.66 +0.5 398,977 - TX73_001905 0.66 +0.5 398,983 - TX73_001905 0.67 +2.0 398,988 - TX73_001905 0.68 +0.8 399,012 + TX73_001905 0.70 -0.3 399,018 + TX73_001905 0.71 +0.7 399,019 - TX73_001905 0.71 +0.8 399,024 - TX73_001905 0.71 +0.5 399,026 - TX73_001905 0.71 -0.2 399,026 - TX73_001905 0.71 +0.8 399,037 + TX73_001905 0.73 +1.1 399,060 + TX73_001905 0.75 -0.2 399,073 + TX73_001905 0.76 +0.3 399,081 - TX73_001905 0.77 -0.4 399,103 + TX73_001905 0.79 +0.8
Or see this region's nucleotide sequence