Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014140

Experiment: 4-Aminobutyric (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_014130 and TX73_014135 are separated by 130 nucleotidesTX73_014135 and TX73_014140 are separated by 5 nucleotidesTX73_014140 and TX73_014145 are separated by 202 nucleotides TX73_014130: TX73_014130 - riboflavin synthase, at 3,097,005 to 3,097,613 _014130 TX73_014135: TX73_014135 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,097,744 to 3,098,235 _014135 TX73_014140: TX73_014140 - transcription antitermination factor NusB, at 3,098,241 to 3,098,765 _014140 TX73_014145: TX73_014145 - thiamine-phosphate kinase, at 3,098,968 to 3,099,939 _014145 Position (kb) 3098 3099Strain fitness (log2 ratio) -1 0 1at 3097.621 kb on + strandat 3097.621 kb on + strandat 3097.634 kb on + strandat 3097.634 kb on + strandat 3097.642 kb on - strandat 3097.642 kb on - strandat 3097.642 kb on - strandat 3097.694 kb on - strandat 3097.700 kb on + strandat 3097.731 kb on - strandat 3097.742 kb on - strandat 3098.273 kb on + strandat 3098.302 kb on - strand, within TX73_014140at 3098.306 kb on + strand, within TX73_014140at 3098.755 kb on + strandat 3098.773 kb on + strandat 3098.774 kb on - strandat 3098.778 kb on + strandat 3098.778 kb on + strandat 3098.778 kb on + strandat 3098.778 kb on + strandat 3098.779 kb on + strandat 3098.786 kb on - strandat 3098.786 kb on - strandat 3098.787 kb on - strandat 3098.787 kb on - strandat 3098.797 kb on + strandat 3098.797 kb on + strandat 3098.798 kb on - strandat 3098.801 kb on + strandat 3098.801 kb on + strandat 3098.814 kb on - strandat 3098.827 kb on - strandat 3098.829 kb on + strandat 3098.841 kb on + strandat 3098.841 kb on + strandat 3098.844 kb on + strandat 3098.849 kb on + strandat 3098.854 kb on + strandat 3098.876 kb on - strandat 3098.888 kb on - strandat 3098.889 kb on - strandat 3098.895 kb on + strandat 3098.899 kb on - strandat 3098.906 kb on + strandat 3098.906 kb on + strandat 3098.908 kb on + strandat 3098.933 kb on - strandat 3098.985 kb on - strandat 3099.003 kb on + strandat 3099.003 kb on + strandat 3099.003 kb on + strandat 3099.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic
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3,097,621 + -0.2
3,097,621 + -0.4
3,097,634 + -0.1
3,097,634 + -0.5
3,097,642 - +0.1
3,097,642 - +0.4
3,097,642 - +0.4
3,097,694 - -0.3
3,097,700 + -0.6
3,097,731 - +0.2
3,097,742 - -0.9
3,098,273 + +0.4
3,098,302 - TX73_014140 0.12 -0.3
3,098,306 + TX73_014140 0.12 -0.5
3,098,755 + +0.4
3,098,773 + -0.4
3,098,774 - +0.2
3,098,778 + -0.2
3,098,778 + -0.4
3,098,778 + -0.9
3,098,778 + +0.8
3,098,779 + +0.2
3,098,786 - -0.4
3,098,786 - +0.6
3,098,787 - -0.5
3,098,787 - -1.2
3,098,797 + -0.3
3,098,797 + -0.5
3,098,798 - -0.0
3,098,801 + +0.1
3,098,801 + +0.2
3,098,814 - -0.3
3,098,827 - +0.6
3,098,829 + -0.2
3,098,841 + +0.0
3,098,841 + -0.2
3,098,844 + +0.6
3,098,849 + -0.2
3,098,854 + +0.0
3,098,876 - +0.2
3,098,888 - -0.8
3,098,889 - -0.9
3,098,895 + -0.8
3,098,899 - -0.0
3,098,906 + +0.7
3,098,906 + +0.1
3,098,908 + +0.2
3,098,933 - +0.8
3,098,985 - -0.5
3,099,003 + +0.1
3,099,003 + +0.3
3,099,003 + -0.4
3,099,011 - +0.4

Or see this region's nucleotide sequence