Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000880

Experiment: 4-Aminobutyric (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000875 and TX73_000880 overlap by 4 nucleotidesTX73_000880 and TX73_000885 are separated by 150 nucleotides TX73_000875: TX73_000875 - peptidoglycan DD-metalloendopeptidase family protein, at 186,427 to 187,818 _000875 TX73_000880: TX73_000880 - S41 family peptidase, at 187,815 to 189,191 _000880 TX73_000885: TX73_000885 - divergent polysaccharide deacetylase family protein, at 189,342 to 190,580 _000885 Position (kb) 187 188 189 190Strain fitness (log2 ratio) -1 0 1 2at 187.789 kb on + strandat 187.800 kb on - strandat 187.807 kb on - strandat 189.074 kb on - strandat 189.087 kb on + strandat 189.097 kb on + strandat 189.097 kb on + strandat 189.097 kb on + strandat 189.105 kb on - strandat 189.166 kb on - strandat 189.188 kb on + strandat 189.199 kb on + strandat 189.244 kb on + strandat 189.244 kb on + strandat 189.262 kb on - strandat 189.267 kb on - strandat 189.268 kb on - strandat 189.287 kb on + strandat 189.287 kb on + strandat 189.287 kb on + strandat 189.295 kb on - strandat 189.307 kb on - strandat 189.429 kb on + strandat 189.432 kb on - strandat 189.432 kb on - strandat 189.442 kb on + strandat 189.448 kb on + strandat 189.471 kb on + strand, within TX73_000885at 189.479 kb on - strand, within TX73_000885at 189.486 kb on - strand, within TX73_000885at 189.486 kb on - strand, within TX73_000885at 189.488 kb on + strand, within TX73_000885at 189.488 kb on + strand, within TX73_000885at 189.493 kb on + strand, within TX73_000885at 189.508 kb on + strand, within TX73_000885at 189.533 kb on + strand, within TX73_000885at 189.533 kb on + strand, within TX73_000885at 189.533 kb on + strand, within TX73_000885at 189.535 kb on - strand, within TX73_000885at 189.541 kb on - strand, within TX73_000885at 189.544 kb on + strand, within TX73_000885at 189.544 kb on + strand, within TX73_000885at 189.552 kb on - strand, within TX73_000885at 189.584 kb on + strand, within TX73_000885at 189.585 kb on + strand, within TX73_000885at 189.593 kb on - strand, within TX73_000885at 189.600 kb on + strand, within TX73_000885at 189.600 kb on + strand, within TX73_000885at 189.600 kb on + strand, within TX73_000885at 189.608 kb on - strand, within TX73_000885at 189.608 kb on - strand, within TX73_000885at 189.635 kb on - strand, within TX73_000885at 189.642 kb on + strand, within TX73_000885at 189.650 kb on - strand, within TX73_000885at 189.664 kb on + strand, within TX73_000885at 189.691 kb on + strand, within TX73_000885at 189.691 kb on + strand, within TX73_000885at 189.699 kb on - strand, within TX73_000885at 189.699 kb on - strand, within TX73_000885at 189.699 kb on - strand, within TX73_000885at 189.702 kb on - strand, within TX73_000885at 189.705 kb on + strand, within TX73_000885at 189.719 kb on + strand, within TX73_000885at 189.741 kb on - strand, within TX73_000885at 189.741 kb on - strand, within TX73_000885at 189.741 kb on - strand, within TX73_000885at 189.744 kb on + strand, within TX73_000885at 189.758 kb on - strand, within TX73_000885at 189.769 kb on + strand, within TX73_000885at 189.777 kb on - strand, within TX73_000885at 189.778 kb on + strand, within TX73_000885at 189.819 kb on + strand, within TX73_000885at 189.846 kb on - strand, within TX73_000885at 189.846 kb on - strand, within TX73_000885at 189.846 kb on - strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.884 kb on + strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.892 kb on - strand, within TX73_000885at 189.899 kb on + strand, within TX73_000885at 189.907 kb on - strand, within TX73_000885at 189.918 kb on - strand, within TX73_000885at 189.952 kb on + strand, within TX73_000885at 189.960 kb on - strand, within TX73_000885at 189.987 kb on + strand, within TX73_000885at 190.009 kb on + strand, within TX73_000885at 190.009 kb on + strand, within TX73_000885at 190.014 kb on + strand, within TX73_000885at 190.017 kb on - strand, within TX73_000885at 190.022 kb on - strand, within TX73_000885at 190.030 kb on + strand, within TX73_000885at 190.040 kb on - strand, within TX73_000885at 190.043 kb on + strand, within TX73_000885at 190.051 kb on + strand, within TX73_000885at 190.060 kb on - strand, within TX73_000885at 190.078 kb on - strand, within TX73_000885at 190.080 kb on - strand, within TX73_000885at 190.105 kb on + strand, within TX73_000885at 190.113 kb on - strand, within TX73_000885at 190.121 kb on - strand, within TX73_000885at 190.122 kb on + strand, within TX73_000885at 190.130 kb on - strand, within TX73_000885at 190.130 kb on - strand, within TX73_000885at 190.130 kb on - strand, within TX73_000885at 190.137 kb on - strand, within TX73_000885at 190.137 kb on - strand, within TX73_000885at 190.177 kb on + strand, within TX73_000885at 190.182 kb on + strand, within TX73_000885at 190.187 kb on + strand, within TX73_000885at 190.189 kb on - strand, within TX73_000885at 190.190 kb on - strand, within TX73_000885at 190.190 kb on - strand, within TX73_000885

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic
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187,789 + +2.5
187,800 - +2.1
187,807 - +1.7
189,074 - -0.9
189,087 + -0.4
189,097 + +0.1
189,097 + -0.3
189,097 + -0.2
189,105 - +1.0
189,166 - +0.1
189,188 + -0.7
189,199 + -0.7
189,244 + +0.6
189,244 + +0.0
189,262 - -0.3
189,267 - +0.2
189,268 - +0.6
189,287 + -0.1
189,287 + +1.0
189,287 + +0.2
189,295 - -1.1
189,307 - +2.1
189,429 + +0.3
189,432 - -0.5
189,432 - +0.5
189,442 + -0.2
189,448 + -0.0
189,471 + TX73_000885 0.10 -0.1
189,479 - TX73_000885 0.11 -0.2
189,486 - TX73_000885 0.12 -0.1
189,486 - TX73_000885 0.12 +0.2
189,488 + TX73_000885 0.12 -0.7
189,488 + TX73_000885 0.12 -0.2
189,493 + TX73_000885 0.12 -0.4
189,508 + TX73_000885 0.13 +0.5
189,533 + TX73_000885 0.15 -0.6
189,533 + TX73_000885 0.15 -0.2
189,533 + TX73_000885 0.15 +0.5
189,535 - TX73_000885 0.16 -0.4
189,541 - TX73_000885 0.16 +0.5
189,544 + TX73_000885 0.16 -0.3
189,544 + TX73_000885 0.16 -0.2
189,552 - TX73_000885 0.17 -0.3
189,584 + TX73_000885 0.20 -0.5
189,585 + TX73_000885 0.20 -0.7
189,593 - TX73_000885 0.20 -0.5
189,600 + TX73_000885 0.21 -0.2
189,600 + TX73_000885 0.21 +0.4
189,600 + TX73_000885 0.21 +0.2
189,608 - TX73_000885 0.21 -1.3
189,608 - TX73_000885 0.21 -0.2
189,635 - TX73_000885 0.24 -0.5
189,642 + TX73_000885 0.24 -0.7
189,650 - TX73_000885 0.25 -0.1
189,664 + TX73_000885 0.26 -0.5
189,691 + TX73_000885 0.28 -0.5
189,691 + TX73_000885 0.28 -0.4
189,699 - TX73_000885 0.29 -1.1
189,699 - TX73_000885 0.29 +0.5
189,699 - TX73_000885 0.29 +0.5
189,702 - TX73_000885 0.29 -0.9
189,705 + TX73_000885 0.29 -0.8
189,719 + TX73_000885 0.30 +2.5
189,741 - TX73_000885 0.32 -0.1
189,741 - TX73_000885 0.32 -1.0
189,741 - TX73_000885 0.32 -0.2
189,744 + TX73_000885 0.32 -0.6
189,758 - TX73_000885 0.34 -1.1
189,769 + TX73_000885 0.34 +0.5
189,777 - TX73_000885 0.35 +0.5
189,778 + TX73_000885 0.35 +0.1
189,819 + TX73_000885 0.38 -0.2
189,846 - TX73_000885 0.41 -0.6
189,846 - TX73_000885 0.41 -0.3
189,846 - TX73_000885 0.41 -0.9
189,884 + TX73_000885 0.44 +0.1
189,884 + TX73_000885 0.44 +1.0
189,884 + TX73_000885 0.44 +0.3
189,884 + TX73_000885 0.44 -0.6
189,884 + TX73_000885 0.44 -0.5
189,884 + TX73_000885 0.44 -0.3
189,884 + TX73_000885 0.44 +0.1
189,884 + TX73_000885 0.44 -1.0
189,892 - TX73_000885 0.44 -0.6
189,892 - TX73_000885 0.44 -0.5
189,892 - TX73_000885 0.44 -0.4
189,892 - TX73_000885 0.44 -0.2
189,892 - TX73_000885 0.44 -0.0
189,892 - TX73_000885 0.44 -0.2
189,892 - TX73_000885 0.44 -0.8
189,892 - TX73_000885 0.44 +1.1
189,892 - TX73_000885 0.44 -0.5
189,892 - TX73_000885 0.44 -0.0
189,892 - TX73_000885 0.44 -0.7
189,892 - TX73_000885 0.44 +0.2
189,892 - TX73_000885 0.44 -0.2
189,892 - TX73_000885 0.44 -0.3
189,899 + TX73_000885 0.45 -1.5
189,907 - TX73_000885 0.46 -0.1
189,918 - TX73_000885 0.46 -1.0
189,952 + TX73_000885 0.49 -0.2
189,960 - TX73_000885 0.50 +0.6
189,987 + TX73_000885 0.52 -0.3
190,009 + TX73_000885 0.54 -0.0
190,009 + TX73_000885 0.54 -0.5
190,014 + TX73_000885 0.54 -0.6
190,017 - TX73_000885 0.54 -0.5
190,022 - TX73_000885 0.55 -0.6
190,030 + TX73_000885 0.56 +0.7
190,040 - TX73_000885 0.56 +0.1
190,043 + TX73_000885 0.57 +0.3
190,051 + TX73_000885 0.57 -0.0
190,060 - TX73_000885 0.58 -0.7
190,078 - TX73_000885 0.59 -0.1
190,080 - TX73_000885 0.60 +0.4
190,105 + TX73_000885 0.62 -0.0
190,113 - TX73_000885 0.62 -0.0
190,121 - TX73_000885 0.63 -0.3
190,122 + TX73_000885 0.63 -0.8
190,130 - TX73_000885 0.64 -0.9
190,130 - TX73_000885 0.64 +0.1
190,130 - TX73_000885 0.64 -0.4
190,137 - TX73_000885 0.64 -0.4
190,137 - TX73_000885 0.64 -0.2
190,177 + TX73_000885 0.67 -0.3
190,182 + TX73_000885 0.68 +0.1
190,187 + TX73_000885 0.68 -0.1
190,189 - TX73_000885 0.68 -0.4
190,190 - TX73_000885 0.68 +0.5
190,190 - TX73_000885 0.68 -0.1

Or see this region's nucleotide sequence