Experiment: 4-Aminobutyric (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_023220 and TX73_023225 are separated by 40 nucleotides TX73_023225 and TX73_023230 are separated by 38 nucleotides TX73_023230 and TX73_023235 are separated by 76 nucleotides TX73_023235 and TX73_023240 overlap by 86 nucleotides TX73_023240 and TX73_023245 are separated by 231 nucleotides
TX73_023220: TX73_023220 - cytochrome c biogenesis protein CcdA, at 5,045,670 to 5,046,413
_023220
TX73_023225: TX73_023225 - thioredoxin fold domain-containing protein, at 5,046,454 to 5,046,858
_023225
TX73_023230: TX73_023230 - metalloregulator ArsR/SmtB family transcription factor, at 5,046,897 to 5,047,271
_023230
TX73_023235: TX73_023235 - YeeE/YedE family protein, at 5,047,348 to 5,048,550
_023235
TX73_023240: TX73_023240 - DsrE family protein, at 5,048,465 to 5,048,917
_023240
TX73_023245: TX73_023245 - YeeE/YedE family protein, at 5,049,149 to 5,050,198
_023245
Position (kb) 5047
5048
5049 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5046.351 kb on + strand at 5046.363 kb on + strand at 5046.363 kb on + strand at 5046.365 kb on + strand at 5046.498 kb on - strand, within TX73_023225 at 5046.523 kb on - strand, within TX73_023225 at 5046.525 kb on + strand, within TX73_023225 at 5046.525 kb on + strand, within TX73_023225 at 5046.528 kb on - strand, within TX73_023225 at 5046.533 kb on - strand, within TX73_023225 at 5046.533 kb on - strand, within TX73_023225 at 5046.533 kb on - strand, within TX73_023225 at 5046.548 kb on + strand, within TX73_023225 at 5046.595 kb on + strand, within TX73_023225 at 5046.603 kb on - strand, within TX73_023225 at 5046.608 kb on + strand, within TX73_023225 at 5046.613 kb on + strand, within TX73_023225 at 5046.632 kb on - strand, within TX73_023225 at 5046.632 kb on - strand, within TX73_023225 at 5046.692 kb on + strand, within TX73_023225 at 5046.692 kb on + strand, within TX73_023225 at 5046.786 kb on - strand, within TX73_023225 at 5046.799 kb on + strand, within TX73_023225 at 5046.852 kb on + strand at 5046.852 kb on + strand at 5046.860 kb on - strand at 5046.861 kb on + strand at 5046.943 kb on + strand, within TX73_023230 at 5046.958 kb on - strand, within TX73_023230 at 5046.958 kb on - strand, within TX73_023230 at 5047.216 kb on + strand, within TX73_023230 at 5047.302 kb on - strand at 5047.348 kb on + strand at 5047.356 kb on - strand at 5047.439 kb on - strand at 5047.439 kb on - strand at 5047.519 kb on - strand, within TX73_023235 at 5047.519 kb on - strand, within TX73_023235 at 5047.519 kb on - strand, within TX73_023235 at 5047.529 kb on - strand, within TX73_023235 at 5047.534 kb on + strand, within TX73_023235 at 5047.537 kb on - strand, within TX73_023235 at 5047.554 kb on + strand, within TX73_023235 at 5047.576 kb on - strand, within TX73_023235 at 5047.636 kb on + strand, within TX73_023235 at 5047.660 kb on + strand, within TX73_023235 at 5047.670 kb on + strand, within TX73_023235 at 5047.688 kb on - strand, within TX73_023235 at 5047.693 kb on + strand, within TX73_023235 at 5047.698 kb on + strand, within TX73_023235 at 5047.701 kb on - strand, within TX73_023235 at 5047.711 kb on - strand, within TX73_023235 at 5047.713 kb on - strand, within TX73_023235 at 5047.723 kb on - strand, within TX73_023235 at 5047.806 kb on + strand, within TX73_023235 at 5047.826 kb on + strand, within TX73_023235 at 5047.974 kb on - strand, within TX73_023235 at 5048.050 kb on - strand, within TX73_023235 at 5048.058 kb on + strand, within TX73_023235 at 5048.079 kb on + strand, within TX73_023235 at 5048.089 kb on + strand, within TX73_023235 at 5048.177 kb on + strand, within TX73_023235 at 5048.185 kb on - strand, within TX73_023235 at 5048.187 kb on + strand, within TX73_023235 at 5048.215 kb on + strand, within TX73_023235 at 5048.255 kb on - strand, within TX73_023235 at 5048.271 kb on - strand, within TX73_023235 at 5048.271 kb on - strand, within TX73_023235 at 5048.277 kb on + strand, within TX73_023235 at 5048.295 kb on - strand, within TX73_023235 at 5048.395 kb on + strand, within TX73_023235 at 5048.418 kb on + strand, within TX73_023235 at 5048.455 kb on + strand at 5048.512 kb on - strand at 5048.535 kb on - strand at 5048.535 kb on - strand at 5048.553 kb on - strand, within TX73_023240 at 5048.658 kb on + strand, within TX73_023240 at 5048.673 kb on - strand, within TX73_023240 at 5048.690 kb on + strand, within TX73_023240 at 5048.701 kb on + strand, within TX73_023240 at 5048.715 kb on + strand, within TX73_023240 at 5048.738 kb on - strand, within TX73_023240 at 5048.779 kb on + strand, within TX73_023240 at 5048.779 kb on + strand, within TX73_023240 at 5048.799 kb on + strand, within TX73_023240 at 5048.821 kb on - strand, within TX73_023240 at 5049.016 kb on + strand at 5049.139 kb on + strand at 5049.140 kb on + strand at 5049.140 kb on + strand at 5049.148 kb on - strand at 5049.148 kb on - strand at 5049.284 kb on + strand, within TX73_023245 at 5049.284 kb on + strand, within TX73_023245 at 5049.284 kb on + strand, within TX73_023245 at 5049.292 kb on - strand, within TX73_023245 at 5049.292 kb on - strand, within TX73_023245 at 5049.292 kb on - strand, within TX73_023245 at 5049.292 kb on - strand, within TX73_023245 at 5049.292 kb on - strand, within TX73_023245 at 5049.292 kb on - strand, within TX73_023245 at 5049.292 kb on - strand, within TX73_023245 at 5049.316 kb on + strand, within TX73_023245 at 5049.319 kb on - strand, within TX73_023245 at 5049.352 kb on - strand, within TX73_023245 at 5049.355 kb on + strand, within TX73_023245 at 5049.355 kb on + strand, within TX73_023245 at 5049.386 kb on + strand, within TX73_023245 at 5049.394 kb on - strand, within TX73_023245 at 5049.396 kb on + strand, within TX73_023245 at 5049.444 kb on - strand, within TX73_023245 at 5049.459 kb on + strand, within TX73_023245 at 5049.491 kb on - strand, within TX73_023245 at 5049.528 kb on + strand, within TX73_023245 at 5049.529 kb on + strand, within TX73_023245 at 5049.536 kb on - strand, within TX73_023245
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic remove 5,046,351 + -0.5 5,046,363 + -0.2 5,046,363 + -1.3 5,046,365 + -0.7 5,046,498 - TX73_023225 0.11 +0.4 5,046,523 - TX73_023225 0.17 -0.2 5,046,525 + TX73_023225 0.18 -1.6 5,046,525 + TX73_023225 0.18 +0.2 5,046,528 - TX73_023225 0.18 -0.5 5,046,533 - TX73_023225 0.20 -1.5 5,046,533 - TX73_023225 0.20 -2.3 5,046,533 - TX73_023225 0.20 -1.4 5,046,548 + TX73_023225 0.23 -0.3 5,046,595 + TX73_023225 0.35 +0.5 5,046,603 - TX73_023225 0.37 -0.4 5,046,608 + TX73_023225 0.38 -1.9 5,046,613 + TX73_023225 0.39 -1.2 5,046,632 - TX73_023225 0.44 -0.0 5,046,632 - TX73_023225 0.44 -1.9 5,046,692 + TX73_023225 0.59 -1.9 5,046,692 + TX73_023225 0.59 -0.1 5,046,786 - TX73_023225 0.82 -0.8 5,046,799 + TX73_023225 0.85 -0.2 5,046,852 + +0.7 5,046,852 + -0.5 5,046,860 - +0.2 5,046,861 + +0.4 5,046,943 + TX73_023230 0.12 +1.6 5,046,958 - TX73_023230 0.16 -0.5 5,046,958 - TX73_023230 0.16 -1.4 5,047,216 + TX73_023230 0.85 +1.5 5,047,302 - +0.1 5,047,348 + -0.2 5,047,356 - -1.1 5,047,439 - -0.5 5,047,439 - -0.7 5,047,519 - TX73_023235 0.14 -3.3 5,047,519 - TX73_023235 0.14 -2.2 5,047,519 - TX73_023235 0.14 -1.1 5,047,529 - TX73_023235 0.15 -1.8 5,047,534 + TX73_023235 0.15 -2.2 5,047,537 - TX73_023235 0.16 -2.4 5,047,554 + TX73_023235 0.17 -2.1 5,047,576 - TX73_023235 0.19 -1.7 5,047,636 + TX73_023235 0.24 -2.0 5,047,660 + TX73_023235 0.26 -0.1 5,047,670 + TX73_023235 0.27 -0.2 5,047,688 - TX73_023235 0.28 -2.6 5,047,693 + TX73_023235 0.29 -1.8 5,047,698 + TX73_023235 0.29 -1.0 5,047,701 - TX73_023235 0.29 -0.8 5,047,711 - TX73_023235 0.30 -1.3 5,047,713 - TX73_023235 0.30 -2.0 5,047,723 - TX73_023235 0.31 -1.0 5,047,806 + TX73_023235 0.38 -1.3 5,047,826 + TX73_023235 0.40 -2.3 5,047,974 - TX73_023235 0.52 -0.5 5,048,050 - TX73_023235 0.58 +0.1 5,048,058 + TX73_023235 0.59 -1.7 5,048,079 + TX73_023235 0.61 -1.0 5,048,089 + TX73_023235 0.62 -1.7 5,048,177 + TX73_023235 0.69 -2.3 5,048,185 - TX73_023235 0.70 -2.2 5,048,187 + TX73_023235 0.70 +0.4 5,048,215 + TX73_023235 0.72 -2.0 5,048,255 - TX73_023235 0.75 -3.1 5,048,271 - TX73_023235 0.77 -0.9 5,048,271 - TX73_023235 0.77 -2.5 5,048,277 + TX73_023235 0.77 -0.8 5,048,295 - TX73_023235 0.79 -2.0 5,048,395 + TX73_023235 0.87 -2.0 5,048,418 + TX73_023235 0.89 -1.1 5,048,455 + -0.8 5,048,512 - -2.2 5,048,535 - -0.4 5,048,535 - -2.8 5,048,553 - TX73_023240 0.19 +0.4 5,048,658 + TX73_023240 0.43 +0.2 5,048,673 - TX73_023240 0.46 -0.2 5,048,690 + TX73_023240 0.50 +0.6 5,048,701 + TX73_023240 0.52 -0.1 5,048,715 + TX73_023240 0.55 +0.0 5,048,738 - TX73_023240 0.60 +1.7 5,048,779 + TX73_023240 0.69 +0.8 5,048,779 + TX73_023240 0.69 +0.4 5,048,799 + TX73_023240 0.74 +0.4 5,048,821 - TX73_023240 0.79 +0.0 5,049,016 + +0.0 5,049,139 + -0.1 5,049,140 + -1.4 5,049,140 + -0.5 5,049,148 - -0.8 5,049,148 - -1.6 5,049,284 + TX73_023245 0.13 +0.3 5,049,284 + TX73_023245 0.13 -0.7 5,049,284 + TX73_023245 0.13 +0.2 5,049,292 - TX73_023245 0.14 -0.1 5,049,292 - TX73_023245 0.14 -0.5 5,049,292 - TX73_023245 0.14 -0.3 5,049,292 - TX73_023245 0.14 -0.9 5,049,292 - TX73_023245 0.14 -1.0 5,049,292 - TX73_023245 0.14 +0.4 5,049,292 - TX73_023245 0.14 -1.6 5,049,316 + TX73_023245 0.16 +0.1 5,049,319 - TX73_023245 0.16 +0.4 5,049,352 - TX73_023245 0.19 -0.9 5,049,355 + TX73_023245 0.20 -1.2 5,049,355 + TX73_023245 0.20 +0.5 5,049,386 + TX73_023245 0.23 +1.2 5,049,394 - TX73_023245 0.23 -0.2 5,049,396 + TX73_023245 0.24 +0.4 5,049,444 - TX73_023245 0.28 -0.1 5,049,459 + TX73_023245 0.30 -0.3 5,049,491 - TX73_023245 0.33 -0.2 5,049,528 + TX73_023245 0.36 -0.1 5,049,529 + TX73_023245 0.36 -1.7 5,049,536 - TX73_023245 0.37 -0.8
Or see this region's nucleotide sequence