Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_019440

Experiment: 4-Aminobutyric (C); anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_019435 and TX73_019440 are separated by 25 nucleotidesTX73_019440 and TX73_019445 are separated by 305 nucleotides TX73_019435: TX73_019435 - circularly permuted type 2 ATP-grasp protein, at 4,244,841 to 4,247,342 _019435 TX73_019440: TX73_019440 - transglutaminase family protein, at 4,247,368 to 4,250,709 _019440 TX73_019445: TX73_019445 - aldolase/citrate lyase family protein, at 4,251,015 to 4,251,791 _019445 Position (kb) 4247 4248 4249 4250 4251Strain fitness (log2 ratio) -3 -2 -1 0 1at 4246.389 kb on + strand, within TX73_019435at 4246.392 kb on - strand, within TX73_019435at 4246.436 kb on + strand, within TX73_019435at 4246.452 kb on - strand, within TX73_019435at 4246.464 kb on - strand, within TX73_019435at 4246.469 kb on - strand, within TX73_019435at 4246.500 kb on + strand, within TX73_019435at 4246.541 kb on - strand, within TX73_019435at 4246.576 kb on - strand, within TX73_019435at 4246.705 kb on - strand, within TX73_019435at 4246.737 kb on + strand, within TX73_019435at 4246.752 kb on + strand, within TX73_019435at 4246.760 kb on - strand, within TX73_019435at 4246.779 kb on - strand, within TX73_019435at 4246.789 kb on - strand, within TX73_019435at 4246.789 kb on - strand, within TX73_019435at 4246.789 kb on - strand, within TX73_019435at 4246.805 kb on + strand, within TX73_019435at 4246.882 kb on - strand, within TX73_019435at 4246.882 kb on - strand, within TX73_019435at 4246.882 kb on - strand, within TX73_019435at 4246.969 kb on + strand, within TX73_019435at 4246.971 kb on + strand, within TX73_019435at 4246.986 kb on + strand, within TX73_019435at 4246.987 kb on - strand, within TX73_019435at 4246.992 kb on - strand, within TX73_019435at 4246.996 kb on + strand, within TX73_019435at 4247.002 kb on - strand, within TX73_019435at 4247.006 kb on + strand, within TX73_019435at 4247.057 kb on + strand, within TX73_019435at 4247.084 kb on - strand, within TX73_019435at 4247.210 kb on - strandat 4247.210 kb on - strandat 4247.298 kb on - strandat 4247.298 kb on - strandat 4247.314 kb on - strandat 4247.361 kb on + strandat 4247.376 kb on + strandat 4247.381 kb on + strandat 4247.391 kb on + strandat 4247.399 kb on - strandat 4247.399 kb on - strandat 4247.445 kb on + strandat 4247.445 kb on + strandat 4247.452 kb on + strandat 4247.453 kb on + strandat 4247.496 kb on - strandat 4247.642 kb on - strandat 4247.660 kb on + strandat 4247.660 kb on + strandat 4247.668 kb on - strandat 4247.702 kb on + strandat 4247.761 kb on + strand, within TX73_019440at 4247.768 kb on + strand, within TX73_019440at 4247.768 kb on + strand, within TX73_019440at 4247.768 kb on + strand, within TX73_019440at 4247.769 kb on - strand, within TX73_019440at 4247.776 kb on - strand, within TX73_019440at 4247.776 kb on - strand, within TX73_019440at 4247.776 kb on - strand, within TX73_019440at 4247.776 kb on - strand, within TX73_019440at 4247.776 kb on - strand, within TX73_019440at 4247.776 kb on - strand, within TX73_019440at 4247.776 kb on - strand, within TX73_019440at 4247.844 kb on - strand, within TX73_019440at 4247.853 kb on + strand, within TX73_019440at 4247.871 kb on + strand, within TX73_019440at 4247.875 kb on + strand, within TX73_019440at 4248.026 kb on + strand, within TX73_019440at 4248.047 kb on - strand, within TX73_019440at 4248.080 kb on + strand, within TX73_019440at 4248.088 kb on - strand, within TX73_019440at 4248.088 kb on - strand, within TX73_019440at 4248.090 kb on - strand, within TX73_019440at 4248.106 kb on + strand, within TX73_019440at 4248.106 kb on + strand, within TX73_019440at 4248.106 kb on + strand, within TX73_019440at 4248.106 kb on + strand, within TX73_019440at 4248.106 kb on + strand, within TX73_019440at 4248.106 kb on + strand, within TX73_019440at 4248.174 kb on + strand, within TX73_019440at 4248.208 kb on + strand, within TX73_019440at 4248.218 kb on + strand, within TX73_019440at 4248.226 kb on - strand, within TX73_019440at 4248.231 kb on - strand, within TX73_019440at 4248.266 kb on - strand, within TX73_019440at 4248.296 kb on + strand, within TX73_019440at 4248.300 kb on + strand, within TX73_019440at 4248.427 kb on - strand, within TX73_019440at 4248.444 kb on + strand, within TX73_019440at 4248.451 kb on - strand, within TX73_019440at 4248.461 kb on + strand, within TX73_019440at 4248.461 kb on + strand, within TX73_019440at 4248.461 kb on + strand, within TX73_019440at 4248.461 kb on + strand, within TX73_019440at 4248.469 kb on - strand, within TX73_019440at 4248.471 kb on + strand, within TX73_019440at 4248.471 kb on + strand, within TX73_019440at 4248.471 kb on + strand, within TX73_019440at 4248.503 kb on + strand, within TX73_019440at 4248.564 kb on - strand, within TX73_019440at 4248.586 kb on - strand, within TX73_019440at 4248.640 kb on - strand, within TX73_019440at 4248.683 kb on - strand, within TX73_019440at 4248.701 kb on + strand, within TX73_019440at 4248.752 kb on - strand, within TX73_019440at 4248.762 kb on + strand, within TX73_019440at 4248.792 kb on + strand, within TX73_019440at 4248.792 kb on + strand, within TX73_019440at 4248.792 kb on + strand, within TX73_019440at 4248.800 kb on - strand, within TX73_019440at 4248.838 kb on + strand, within TX73_019440at 4248.845 kb on + strand, within TX73_019440at 4248.845 kb on + strand, within TX73_019440at 4248.855 kb on + strand, within TX73_019440at 4248.872 kb on - strand, within TX73_019440at 4248.879 kb on + strand, within TX73_019440at 4248.949 kb on + strand, within TX73_019440at 4249.003 kb on - strand, within TX73_019440at 4249.095 kb on + strand, within TX73_019440at 4249.123 kb on - strand, within TX73_019440at 4249.173 kb on - strand, within TX73_019440at 4249.182 kb on + strand, within TX73_019440at 4249.229 kb on - strand, within TX73_019440at 4249.240 kb on + strand, within TX73_019440at 4249.240 kb on + strand, within TX73_019440at 4249.258 kb on + strand, within TX73_019440at 4249.296 kb on + strand, within TX73_019440at 4249.334 kb on + strand, within TX73_019440at 4249.412 kb on - strand, within TX73_019440at 4249.479 kb on + strand, within TX73_019440at 4249.497 kb on - strand, within TX73_019440at 4249.526 kb on - strand, within TX73_019440at 4249.531 kb on + strand, within TX73_019440at 4249.553 kb on + strand, within TX73_019440at 4249.561 kb on + strand, within TX73_019440at 4249.577 kb on + strand, within TX73_019440at 4249.585 kb on - strand, within TX73_019440at 4249.586 kb on + strand, within TX73_019440at 4249.675 kb on - strand, within TX73_019440at 4249.709 kb on - strand, within TX73_019440at 4249.787 kb on - strand, within TX73_019440at 4249.803 kb on - strand, within TX73_019440at 4249.880 kb on + strand, within TX73_019440at 4249.890 kb on + strand, within TX73_019440at 4249.897 kb on + strand, within TX73_019440at 4249.897 kb on + strand, within TX73_019440at 4249.910 kb on - strand, within TX73_019440at 4249.962 kb on + strand, within TX73_019440at 4249.982 kb on - strand, within TX73_019440at 4250.141 kb on + strand, within TX73_019440at 4250.193 kb on + strand, within TX73_019440at 4250.199 kb on + strand, within TX73_019440at 4250.207 kb on - strand, within TX73_019440at 4250.215 kb on + strand, within TX73_019440at 4250.242 kb on - strand, within TX73_019440at 4250.324 kb on + strand, within TX73_019440at 4250.337 kb on + strand, within TX73_019440at 4250.356 kb on - strand, within TX73_019440at 4250.414 kb on + strandat 4250.449 kb on - strandat 4250.449 kb on - strandat 4250.643 kb on - strandat 4250.701 kb on + strandat 4250.744 kb on + strandat 4250.747 kb on - strandat 4250.749 kb on + strandat 4250.783 kb on - strandat 4250.783 kb on - strandat 4250.786 kb on + strandat 4250.786 kb on + strandat 4250.794 kb on - strandat 4250.794 kb on - strandat 4250.802 kb on + strandat 4250.810 kb on - strandat 4250.820 kb on - strandat 4250.820 kb on - strandat 4250.820 kb on - strandat 4250.847 kb on + strandat 4250.897 kb on + strandat 4250.930 kb on - strandat 4251.096 kb on - strand, within TX73_019445at 4251.098 kb on - strand, within TX73_019445at 4251.105 kb on - strand, within TX73_019445at 4251.146 kb on + strand, within TX73_019445at 4251.164 kb on - strand, within TX73_019445at 4251.171 kb on - strand, within TX73_019445at 4251.171 kb on - strand, within TX73_019445at 4251.175 kb on - strand, within TX73_019445at 4251.262 kb on - strand, within TX73_019445at 4251.263 kb on - strand, within TX73_019445at 4251.540 kb on + strand, within TX73_019445at 4251.548 kb on - strand, within TX73_019445at 4251.617 kb on + strand, within TX73_019445at 4251.670 kb on + strand, within TX73_019445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic
remove
4,246,389 + TX73_019435 0.62 -1.0
4,246,392 - TX73_019435 0.62 -0.6
4,246,436 + TX73_019435 0.64 +0.8
4,246,452 - TX73_019435 0.64 -0.1
4,246,464 - TX73_019435 0.65 -1.6
4,246,469 - TX73_019435 0.65 +0.2
4,246,500 + TX73_019435 0.66 +0.0
4,246,541 - TX73_019435 0.68 +0.4
4,246,576 - TX73_019435 0.69 -1.0
4,246,705 - TX73_019435 0.75 -0.4
4,246,737 + TX73_019435 0.76 -0.6
4,246,752 + TX73_019435 0.76 +1.0
4,246,760 - TX73_019435 0.77 +0.0
4,246,779 - TX73_019435 0.77 -0.9
4,246,789 - TX73_019435 0.78 -0.5
4,246,789 - TX73_019435 0.78 -0.0
4,246,789 - TX73_019435 0.78 +0.3
4,246,805 + TX73_019435 0.78 +1.2
4,246,882 - TX73_019435 0.82 -0.4
4,246,882 - TX73_019435 0.82 -0.0
4,246,882 - TX73_019435 0.82 -0.0
4,246,969 + TX73_019435 0.85 +0.5
4,246,971 + TX73_019435 0.85 -0.6
4,246,986 + TX73_019435 0.86 +0.3
4,246,987 - TX73_019435 0.86 +0.7
4,246,992 - TX73_019435 0.86 -0.7
4,246,996 + TX73_019435 0.86 -0.0
4,247,002 - TX73_019435 0.86 +0.1
4,247,006 + TX73_019435 0.87 -0.6
4,247,057 + TX73_019435 0.89 +0.4
4,247,084 - TX73_019435 0.90 -0.6
4,247,210 - -0.7
4,247,210 - +0.4
4,247,298 - -1.5
4,247,298 - +0.4
4,247,314 - -0.2
4,247,361 + -0.8
4,247,376 + +0.5
4,247,381 + +0.4
4,247,391 + +0.1
4,247,399 - +0.8
4,247,399 - -0.4
4,247,445 + +0.4
4,247,445 + -0.9
4,247,452 + +0.5
4,247,453 + -0.7
4,247,496 - +0.2
4,247,642 - +0.1
4,247,660 + +0.0
4,247,660 + -0.1
4,247,668 - -0.4
4,247,702 + -0.5
4,247,761 + TX73_019440 0.12 +1.4
4,247,768 + TX73_019440 0.12 +0.7
4,247,768 + TX73_019440 0.12 +0.4
4,247,768 + TX73_019440 0.12 -0.8
4,247,769 - TX73_019440 0.12 +0.4
4,247,776 - TX73_019440 0.12 +0.2
4,247,776 - TX73_019440 0.12 +0.3
4,247,776 - TX73_019440 0.12 -0.2
4,247,776 - TX73_019440 0.12 +0.5
4,247,776 - TX73_019440 0.12 -2.3
4,247,776 - TX73_019440 0.12 -0.1
4,247,776 - TX73_019440 0.12 +0.3
4,247,844 - TX73_019440 0.14 -0.5
4,247,853 + TX73_019440 0.15 -0.0
4,247,871 + TX73_019440 0.15 +0.9
4,247,875 + TX73_019440 0.15 -0.5
4,248,026 + TX73_019440 0.20 -0.1
4,248,047 - TX73_019440 0.20 +1.5
4,248,080 + TX73_019440 0.21 +0.8
4,248,088 - TX73_019440 0.22 +0.6
4,248,088 - TX73_019440 0.22 -0.6
4,248,090 - TX73_019440 0.22 -0.4
4,248,106 + TX73_019440 0.22 +0.6
4,248,106 + TX73_019440 0.22 +0.2
4,248,106 + TX73_019440 0.22 +1.0
4,248,106 + TX73_019440 0.22 +0.8
4,248,106 + TX73_019440 0.22 +0.4
4,248,106 + TX73_019440 0.22 -0.1
4,248,174 + TX73_019440 0.24 -0.3
4,248,208 + TX73_019440 0.25 +0.0
4,248,218 + TX73_019440 0.25 +0.2
4,248,226 - TX73_019440 0.26 -0.2
4,248,231 - TX73_019440 0.26 +0.3
4,248,266 - TX73_019440 0.27 -0.7
4,248,296 + TX73_019440 0.28 -0.1
4,248,300 + TX73_019440 0.28 +0.0
4,248,427 - TX73_019440 0.32 +0.1
4,248,444 + TX73_019440 0.32 -0.3
4,248,451 - TX73_019440 0.32 +0.2
4,248,461 + TX73_019440 0.33 -0.3
4,248,461 + TX73_019440 0.33 -0.2
4,248,461 + TX73_019440 0.33 +0.1
4,248,461 + TX73_019440 0.33 -0.1
4,248,469 - TX73_019440 0.33 -0.5
4,248,471 + TX73_019440 0.33 +0.4
4,248,471 + TX73_019440 0.33 +0.2
4,248,471 + TX73_019440 0.33 +0.4
4,248,503 + TX73_019440 0.34 +0.3
4,248,564 - TX73_019440 0.36 +1.0
4,248,586 - TX73_019440 0.36 +0.8
4,248,640 - TX73_019440 0.38 -0.4
4,248,683 - TX73_019440 0.39 +0.9
4,248,701 + TX73_019440 0.40 +1.2
4,248,752 - TX73_019440 0.41 +0.4
4,248,762 + TX73_019440 0.42 -0.1
4,248,792 + TX73_019440 0.43 +0.4
4,248,792 + TX73_019440 0.43 -0.1
4,248,792 + TX73_019440 0.43 +0.4
4,248,800 - TX73_019440 0.43 -3.0
4,248,838 + TX73_019440 0.44 +1.2
4,248,845 + TX73_019440 0.44 +0.9
4,248,845 + TX73_019440 0.44 -0.7
4,248,855 + TX73_019440 0.44 +0.8
4,248,872 - TX73_019440 0.45 +0.2
4,248,879 + TX73_019440 0.45 +0.6
4,248,949 + TX73_019440 0.47 +0.3
4,249,003 - TX73_019440 0.49 +0.9
4,249,095 + TX73_019440 0.52 +1.3
4,249,123 - TX73_019440 0.53 -0.1
4,249,173 - TX73_019440 0.54 -1.2
4,249,182 + TX73_019440 0.54 +0.6
4,249,229 - TX73_019440 0.56 +0.8
4,249,240 + TX73_019440 0.56 +0.1
4,249,240 + TX73_019440 0.56 +0.1
4,249,258 + TX73_019440 0.57 +0.5
4,249,296 + TX73_019440 0.58 -0.1
4,249,334 + TX73_019440 0.59 +0.6
4,249,412 - TX73_019440 0.61 +0.9
4,249,479 + TX73_019440 0.63 +0.7
4,249,497 - TX73_019440 0.64 +0.0
4,249,526 - TX73_019440 0.65 +0.2
4,249,531 + TX73_019440 0.65 +0.2
4,249,553 + TX73_019440 0.65 -0.5
4,249,561 + TX73_019440 0.66 +0.0
4,249,577 + TX73_019440 0.66 +0.8
4,249,585 - TX73_019440 0.66 +0.2
4,249,586 + TX73_019440 0.66 -0.2
4,249,675 - TX73_019440 0.69 -0.1
4,249,709 - TX73_019440 0.70 -0.0
4,249,787 - TX73_019440 0.72 -0.2
4,249,803 - TX73_019440 0.73 +0.1
4,249,880 + TX73_019440 0.75 +0.7
4,249,890 + TX73_019440 0.75 +0.3
4,249,897 + TX73_019440 0.76 -0.5
4,249,897 + TX73_019440 0.76 -0.6
4,249,910 - TX73_019440 0.76 +0.1
4,249,962 + TX73_019440 0.78 +1.3
4,249,982 - TX73_019440 0.78 -1.0
4,250,141 + TX73_019440 0.83 +0.6
4,250,193 + TX73_019440 0.85 -0.4
4,250,199 + TX73_019440 0.85 +0.4
4,250,207 - TX73_019440 0.85 +1.3
4,250,215 + TX73_019440 0.85 -0.6
4,250,242 - TX73_019440 0.86 +0.1
4,250,324 + TX73_019440 0.88 -0.1
4,250,337 + TX73_019440 0.89 +0.5
4,250,356 - TX73_019440 0.89 +0.4
4,250,414 + -1.0
4,250,449 - +0.6
4,250,449 - +0.5
4,250,643 - -1.3
4,250,701 + +0.8
4,250,744 + +0.4
4,250,747 - +0.2
4,250,749 + -0.6
4,250,783 - +0.6
4,250,783 - +1.2
4,250,786 + -1.0
4,250,786 + +0.2
4,250,794 - +0.2
4,250,794 - +0.2
4,250,802 + -0.8
4,250,810 - +0.2
4,250,820 - -2.2
4,250,820 - +0.2
4,250,820 - +0.1
4,250,847 + -0.1
4,250,897 + -0.1
4,250,930 - -0.3
4,251,096 - TX73_019445 0.10 -1.2
4,251,098 - TX73_019445 0.11 +0.7
4,251,105 - TX73_019445 0.12 -0.9
4,251,146 + TX73_019445 0.17 +1.6
4,251,164 - TX73_019445 0.19 -0.8
4,251,171 - TX73_019445 0.20 -1.3
4,251,171 - TX73_019445 0.20 -0.6
4,251,175 - TX73_019445 0.21 +0.2
4,251,262 - TX73_019445 0.32 +0.2
4,251,263 - TX73_019445 0.32 +0.2
4,251,540 + TX73_019445 0.68 -0.2
4,251,548 - TX73_019445 0.69 -0.1
4,251,617 + TX73_019445 0.77 +0.1
4,251,670 + TX73_019445 0.84 -0.8

Or see this region's nucleotide sequence