Experiment: 4-Aminobutyric (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003155 and TX73_003160 overlap by 4 nucleotides TX73_003160 and TX73_003165 are separated by 120 nucleotides TX73_003165 and TX73_003170 overlap by 4 nucleotides TX73_003170 and TX73_003175 are separated by 4 nucleotides
TX73_003155: TX73_003155 - hydroxyacylglutathione hydrolase, at 678,566 to 679,333
_003155
TX73_003160: TX73_003160 - cupin domain-containing protein, at 679,330 to 679,767
_003160
TX73_003165: TX73_003165 - sugar kinase, at 679,888 to 680,826
_003165
TX73_003170: TX73_003170 - NAD(+) diphosphatase, at 680,823 to 681,755
_003170
TX73_003175: TX73_003175 - HIT family protein, at 681,760 to 682,179
_003175
Position (kb) 679
680
681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 678.897 kb on + strand, within TX73_003155 at 678.897 kb on + strand, within TX73_003155 at 678.903 kb on + strand, within TX73_003155 at 678.919 kb on + strand, within TX73_003155 at 678.942 kb on + strand, within TX73_003155 at 678.950 kb on - strand, within TX73_003155 at 678.952 kb on + strand, within TX73_003155 at 678.960 kb on - strand, within TX73_003155 at 678.970 kb on + strand, within TX73_003155 at 678.978 kb on - strand, within TX73_003155 at 679.007 kb on + strand, within TX73_003155 at 679.016 kb on - strand, within TX73_003155 at 679.056 kb on + strand, within TX73_003155 at 679.066 kb on + strand, within TX73_003155 at 679.074 kb on - strand, within TX73_003155 at 679.082 kb on - strand, within TX73_003155 at 679.084 kb on - strand, within TX73_003155 at 679.089 kb on + strand, within TX73_003155 at 679.123 kb on + strand, within TX73_003155 at 679.128 kb on + strand, within TX73_003155 at 679.177 kb on + strand, within TX73_003155 at 679.183 kb on + strand, within TX73_003155 at 679.214 kb on + strand, within TX73_003155 at 679.224 kb on + strand, within TX73_003155 at 679.342 kb on - strand at 679.347 kb on - strand at 679.349 kb on - strand at 679.376 kb on + strand, within TX73_003160 at 679.384 kb on - strand, within TX73_003160 at 679.395 kb on - strand, within TX73_003160 at 679.397 kb on - strand, within TX73_003160 at 679.477 kb on - strand, within TX73_003160 at 679.519 kb on + strand, within TX73_003160 at 679.525 kb on + strand, within TX73_003160 at 679.533 kb on - strand, within TX73_003160 at 679.549 kb on + strand, within TX73_003160 at 679.549 kb on + strand, within TX73_003160 at 679.557 kb on - strand, within TX73_003160 at 679.557 kb on - strand, within TX73_003160 at 679.597 kb on - strand, within TX73_003160 at 679.601 kb on + strand, within TX73_003160 at 679.645 kb on + strand, within TX73_003160 at 679.748 kb on + strand at 679.748 kb on + strand at 679.756 kb on - strand at 679.786 kb on + strand at 679.798 kb on + strand at 679.810 kb on + strand at 679.818 kb on - strand at 679.820 kb on - strand at 679.833 kb on - strand at 679.858 kb on - strand at 679.879 kb on - strand at 679.893 kb on - strand at 679.893 kb on - strand at 679.907 kb on + strand at 679.929 kb on + strand at 679.939 kb on + strand at 679.956 kb on - strand at 679.968 kb on - strand at 679.978 kb on - strand at 679.978 kb on - strand at 680.002 kb on + strand, within TX73_003165 at 680.004 kb on - strand, within TX73_003165 at 680.007 kb on + strand, within TX73_003165 at 680.010 kb on - strand, within TX73_003165 at 680.015 kb on - strand, within TX73_003165 at 680.020 kb on + strand, within TX73_003165 at 680.020 kb on + strand, within TX73_003165 at 680.028 kb on - strand, within TX73_003165 at 680.028 kb on - strand, within TX73_003165 at 680.028 kb on - strand, within TX73_003165 at 680.028 kb on - strand, within TX73_003165 at 680.043 kb on - strand, within TX73_003165 at 680.080 kb on - strand, within TX73_003165 at 680.087 kb on + strand, within TX73_003165 at 680.114 kb on + strand, within TX73_003165 at 680.119 kb on + strand, within TX73_003165 at 680.151 kb on + strand, within TX73_003165 at 680.151 kb on + strand, within TX73_003165 at 680.159 kb on - strand, within TX73_003165 at 680.242 kb on + strand, within TX73_003165 at 680.242 kb on + strand, within TX73_003165 at 680.242 kb on + strand, within TX73_003165 at 680.245 kb on - strand, within TX73_003165 at 680.263 kb on + strand, within TX73_003165 at 680.263 kb on + strand, within TX73_003165 at 680.263 kb on + strand, within TX73_003165 at 680.271 kb on - strand, within TX73_003165 at 680.271 kb on - strand, within TX73_003165 at 680.282 kb on - strand, within TX73_003165 at 680.309 kb on + strand, within TX73_003165 at 680.336 kb on - strand, within TX73_003165 at 680.365 kb on - strand, within TX73_003165 at 680.367 kb on - strand, within TX73_003165 at 680.375 kb on + strand, within TX73_003165 at 680.395 kb on + strand, within TX73_003165 at 680.400 kb on + strand, within TX73_003165 at 680.400 kb on + strand, within TX73_003165 at 680.408 kb on - strand, within TX73_003165 at 680.414 kb on + strand, within TX73_003165 at 680.415 kb on + strand, within TX73_003165 at 680.422 kb on - strand, within TX73_003165 at 680.422 kb on - strand, within TX73_003165 at 680.422 kb on - strand, within TX73_003165 at 680.424 kb on + strand, within TX73_003165 at 680.427 kb on + strand, within TX73_003165 at 680.432 kb on + strand, within TX73_003165 at 680.442 kb on - strand, within TX73_003165 at 680.447 kb on + strand, within TX73_003165 at 680.455 kb on - strand, within TX73_003165 at 680.457 kb on + strand, within TX73_003165 at 680.465 kb on - strand, within TX73_003165 at 680.465 kb on - strand, within TX73_003165 at 680.473 kb on + strand, within TX73_003165 at 680.475 kb on + strand, within TX73_003165 at 680.480 kb on + strand, within TX73_003165 at 680.481 kb on - strand, within TX73_003165 at 680.483 kb on - strand, within TX73_003165 at 680.503 kb on + strand, within TX73_003165 at 680.511 kb on - strand, within TX73_003165 at 680.511 kb on - strand, within TX73_003165 at 680.511 kb on - strand, within TX73_003165 at 680.526 kb on - strand, within TX73_003165 at 680.544 kb on + strand, within TX73_003165 at 680.544 kb on + strand, within TX73_003165 at 680.550 kb on - strand, within TX73_003165 at 680.552 kb on - strand, within TX73_003165 at 680.590 kb on + strand, within TX73_003165 at 680.598 kb on + strand, within TX73_003165 at 680.609 kb on + strand, within TX73_003165 at 680.631 kb on - strand, within TX73_003165 at 680.635 kb on + strand, within TX73_003165 at 680.643 kb on - strand, within TX73_003165 at 680.648 kb on + strand, within TX73_003165 at 680.693 kb on + strand, within TX73_003165 at 680.724 kb on + strand, within TX73_003165 at 680.724 kb on - strand, within TX73_003165 at 680.732 kb on - strand, within TX73_003165 at 680.755 kb on - strand at 680.768 kb on - strand at 680.786 kb on + strand at 680.788 kb on + strand at 680.814 kb on - strand at 680.816 kb on - strand at 680.821 kb on + strand at 680.829 kb on - strand at 680.834 kb on + strand at 680.842 kb on - strand at 680.842 kb on - strand at 680.849 kb on + strand at 680.877 kb on + strand at 680.877 kb on - strand at 680.881 kb on + strand at 680.881 kb on + strand at 680.881 kb on + strand at 680.884 kb on - strand at 680.884 kb on - strand at 680.889 kb on - strand at 680.889 kb on - strand at 680.889 kb on - strand at 680.889 kb on - strand at 680.977 kb on - strand, within TX73_003170 at 681.035 kb on + strand, within TX73_003170 at 681.036 kb on - strand, within TX73_003170 at 681.042 kb on - strand, within TX73_003170 at 681.042 kb on - strand, within TX73_003170 at 681.042 kb on - strand, within TX73_003170 at 681.052 kb on + strand, within TX73_003170 at 681.067 kb on + strand, within TX73_003170 at 681.128 kb on - strand, within TX73_003170 at 681.167 kb on - strand, within TX73_003170 at 681.202 kb on - strand, within TX73_003170 at 681.256 kb on + strand, within TX73_003170 at 681.264 kb on - strand, within TX73_003170 at 681.264 kb on - strand, within TX73_003170 at 681.288 kb on + strand, within TX73_003170 at 681.325 kb on + strand, within TX73_003170 at 681.395 kb on + strand, within TX73_003170 at 681.410 kb on + strand, within TX73_003170 at 681.410 kb on + strand, within TX73_003170 at 681.410 kb on + strand, within TX73_003170 at 681.418 kb on - strand, within TX73_003170 at 681.418 kb on - strand, within TX73_003170 at 681.489 kb on + strand, within TX73_003170 at 681.507 kb on + strand, within TX73_003170 at 681.536 kb on + strand, within TX73_003170 at 681.573 kb on - strand, within TX73_003170 at 681.585 kb on - strand, within TX73_003170 at 681.623 kb on + strand, within TX73_003170 at 681.628 kb on + strand, within TX73_003170 at 681.628 kb on + strand, within TX73_003170 at 681.629 kb on - strand, within TX73_003170 at 681.648 kb on - strand, within TX73_003170 at 681.661 kb on + strand, within TX73_003170 at 681.661 kb on - strand, within TX73_003170 at 681.661 kb on - strand, within TX73_003170 at 681.684 kb on + strand at 681.684 kb on + strand at 681.684 kb on + strand at 681.689 kb on + strand at 681.697 kb on - strand at 681.703 kb on - strand at 681.710 kb on - strand at 681.725 kb on - strand at 681.731 kb on + strand at 681.736 kb on + strand at 681.766 kb on - strand at 681.770 kb on - strand at 681.775 kb on - strand at 681.799 kb on + strand at 681.801 kb on + strand at 681.809 kb on - strand, within TX73_003175 at 681.818 kb on - strand, within TX73_003175 at 681.818 kb on - strand, within TX73_003175
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic remove 678,897 + TX73_003155 0.43 +0.9 678,897 + TX73_003155 0.43 +0.5 678,903 + TX73_003155 0.44 +0.8 678,919 + TX73_003155 0.46 -1.0 678,942 + TX73_003155 0.49 +0.7 678,950 - TX73_003155 0.50 -0.3 678,952 + TX73_003155 0.50 -0.0 678,960 - TX73_003155 0.51 +1.1 678,970 + TX73_003155 0.53 +1.9 678,978 - TX73_003155 0.54 -0.2 679,007 + TX73_003155 0.57 -0.2 679,016 - TX73_003155 0.59 +0.2 679,056 + TX73_003155 0.64 -0.4 679,066 + TX73_003155 0.65 +0.1 679,074 - TX73_003155 0.66 -0.2 679,082 - TX73_003155 0.67 +1.3 679,084 - TX73_003155 0.67 +0.2 679,089 + TX73_003155 0.68 +0.1 679,123 + TX73_003155 0.73 +0.6 679,128 + TX73_003155 0.73 -0.6 679,177 + TX73_003155 0.80 +0.1 679,183 + TX73_003155 0.80 +0.1 679,214 + TX73_003155 0.84 +0.8 679,224 + TX73_003155 0.86 +0.3 679,342 - -0.4 679,347 - +0.3 679,349 - +0.9 679,376 + TX73_003160 0.11 -0.3 679,384 - TX73_003160 0.12 +0.3 679,395 - TX73_003160 0.15 -0.3 679,397 - TX73_003160 0.15 -0.7 679,477 - TX73_003160 0.34 -0.1 679,519 + TX73_003160 0.43 -0.4 679,525 + TX73_003160 0.45 -0.3 679,533 - TX73_003160 0.46 +0.0 679,549 + TX73_003160 0.50 -1.5 679,549 + TX73_003160 0.50 -0.4 679,557 - TX73_003160 0.52 +0.2 679,557 - TX73_003160 0.52 -0.5 679,597 - TX73_003160 0.61 +0.7 679,601 + TX73_003160 0.62 -0.1 679,645 + TX73_003160 0.72 +0.4 679,748 + -0.2 679,748 + +1.3 679,756 - +0.9 679,786 + -0.2 679,798 + -0.1 679,810 + -0.5 679,818 - -0.2 679,820 - -0.4 679,833 - -0.3 679,858 - +0.4 679,879 - +0.6 679,893 - +0.3 679,893 - -0.9 679,907 + -0.2 679,929 + -0.9 679,939 + -1.3 679,956 - -1.3 679,968 - -0.1 679,978 - -0.5 679,978 - -0.7 680,002 + TX73_003165 0.12 +0.1 680,004 - TX73_003165 0.12 -0.4 680,007 + TX73_003165 0.13 +1.7 680,010 - TX73_003165 0.13 -1.6 680,015 - TX73_003165 0.14 -1.7 680,020 + TX73_003165 0.14 -1.5 680,020 + TX73_003165 0.14 -1.8 680,028 - TX73_003165 0.15 -2.3 680,028 - TX73_003165 0.15 -1.0 680,028 - TX73_003165 0.15 -1.5 680,028 - TX73_003165 0.15 +0.1 680,043 - TX73_003165 0.17 -1.0 680,080 - TX73_003165 0.20 -0.2 680,087 + TX73_003165 0.21 -0.3 680,114 + TX73_003165 0.24 -1.8 680,119 + TX73_003165 0.25 -1.3 680,151 + TX73_003165 0.28 -1.3 680,151 + TX73_003165 0.28 -2.5 680,159 - TX73_003165 0.29 -1.0 680,242 + TX73_003165 0.38 -1.7 680,242 + TX73_003165 0.38 -0.7 680,242 + TX73_003165 0.38 -0.4 680,245 - TX73_003165 0.38 +0.1 680,263 + TX73_003165 0.40 -0.7 680,263 + TX73_003165 0.40 -2.9 680,263 + TX73_003165 0.40 -0.3 680,271 - TX73_003165 0.41 -0.3 680,271 - TX73_003165 0.41 -0.4 680,282 - TX73_003165 0.42 -1.5 680,309 + TX73_003165 0.45 -0.7 680,336 - TX73_003165 0.48 -1.8 680,365 - TX73_003165 0.51 -0.9 680,367 - TX73_003165 0.51 -1.2 680,375 + TX73_003165 0.52 +0.1 680,395 + TX73_003165 0.54 -0.3 680,400 + TX73_003165 0.55 -3.9 680,400 + TX73_003165 0.55 -1.4 680,408 - TX73_003165 0.55 -1.5 680,414 + TX73_003165 0.56 -1.3 680,415 + TX73_003165 0.56 +0.5 680,422 - TX73_003165 0.57 -1.2 680,422 - TX73_003165 0.57 -0.8 680,422 - TX73_003165 0.57 -1.1 680,424 + TX73_003165 0.57 -1.0 680,427 + TX73_003165 0.57 -1.0 680,432 + TX73_003165 0.58 -1.0 680,442 - TX73_003165 0.59 -0.4 680,447 + TX73_003165 0.60 -1.8 680,455 - TX73_003165 0.60 -1.2 680,457 + TX73_003165 0.61 -0.7 680,465 - TX73_003165 0.61 +0.7 680,465 - TX73_003165 0.61 -0.1 680,473 + TX73_003165 0.62 +0.4 680,475 + TX73_003165 0.63 -1.9 680,480 + TX73_003165 0.63 -0.3 680,481 - TX73_003165 0.63 -1.8 680,483 - TX73_003165 0.63 +0.1 680,503 + TX73_003165 0.65 -2.3 680,511 - TX73_003165 0.66 -0.7 680,511 - TX73_003165 0.66 +0.1 680,511 - TX73_003165 0.66 -3.1 680,526 - TX73_003165 0.68 -1.0 680,544 + TX73_003165 0.70 -0.6 680,544 + TX73_003165 0.70 -2.1 680,550 - TX73_003165 0.71 -1.5 680,552 - TX73_003165 0.71 -1.5 680,590 + TX73_003165 0.75 -1.7 680,598 + TX73_003165 0.76 -0.5 680,609 + TX73_003165 0.77 -0.9 680,631 - TX73_003165 0.79 -0.7 680,635 + TX73_003165 0.80 -0.1 680,643 - TX73_003165 0.80 -1.4 680,648 + TX73_003165 0.81 -0.9 680,693 + TX73_003165 0.86 -0.2 680,724 + TX73_003165 0.89 -0.4 680,724 - TX73_003165 0.89 -0.7 680,732 - TX73_003165 0.90 -1.4 680,755 - -1.3 680,768 - -1.5 680,786 + -0.3 680,788 + -1.3 680,814 - -0.4 680,816 - -2.0 680,821 + +0.2 680,829 - +0.4 680,834 + +0.2 680,842 - +0.3 680,842 - +0.5 680,849 + +0.3 680,877 + -0.0 680,877 - -0.8 680,881 + -0.3 680,881 + +0.4 680,881 + -0.2 680,884 - +0.6 680,884 - +0.6 680,889 - -0.3 680,889 - +0.6 680,889 - +0.5 680,889 - +0.8 680,977 - TX73_003170 0.17 +0.1 681,035 + TX73_003170 0.23 +1.1 681,036 - TX73_003170 0.23 +0.2 681,042 - TX73_003170 0.23 +0.5 681,042 - TX73_003170 0.23 -0.3 681,042 - TX73_003170 0.23 +0.4 681,052 + TX73_003170 0.25 +0.8 681,067 + TX73_003170 0.26 +0.0 681,128 - TX73_003170 0.33 -0.8 681,167 - TX73_003170 0.37 +0.1 681,202 - TX73_003170 0.41 -0.4 681,256 + TX73_003170 0.46 -1.6 681,264 - TX73_003170 0.47 +0.2 681,264 - TX73_003170 0.47 +1.5 681,288 + TX73_003170 0.50 +0.0 681,325 + TX73_003170 0.54 -0.3 681,395 + TX73_003170 0.61 +0.4 681,410 + TX73_003170 0.63 +0.4 681,410 + TX73_003170 0.63 -0.0 681,410 + TX73_003170 0.63 -0.6 681,418 - TX73_003170 0.64 +0.6 681,418 - TX73_003170 0.64 +0.4 681,489 + TX73_003170 0.71 -0.3 681,507 + TX73_003170 0.73 -0.3 681,536 + TX73_003170 0.76 +0.6 681,573 - TX73_003170 0.80 +0.0 681,585 - TX73_003170 0.82 -0.1 681,623 + TX73_003170 0.86 +1.0 681,628 + TX73_003170 0.86 -0.9 681,628 + TX73_003170 0.86 +0.1 681,629 - TX73_003170 0.86 +0.1 681,648 - TX73_003170 0.88 -0.3 681,661 + TX73_003170 0.90 -0.2 681,661 - TX73_003170 0.90 +0.7 681,661 - TX73_003170 0.90 -0.2 681,684 + +0.2 681,684 + -0.2 681,684 + -0.2 681,689 + +0.9 681,697 - +0.3 681,703 - -0.1 681,710 - +0.4 681,725 - +0.4 681,731 + -0.1 681,736 + +0.1 681,766 - -0.9 681,770 - -0.2 681,775 - -0.8 681,799 + -0.0 681,801 + +0.8 681,809 - TX73_003175 0.12 +0.1 681,818 - TX73_003175 0.14 +0.3 681,818 - TX73_003175 0.14 +0.4
Or see this region's nucleotide sequence