Experiment: 4-Aminobutyric (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001905 and TX73_001910 are separated by 72 nucleotides TX73_001910 and TX73_001915 are separated by 238 nucleotides TX73_001915 and TX73_001920 are separated by 92 nucleotides
TX73_001905: TX73_001905 - RluA family pseudouridine synthase, at 398,329 to 399,303
_001905
TX73_001910: TX73_001910 - hypothetical protein, at 399,376 to 399,711
_001910
TX73_001915: TX73_001915 - tRNA-Glu, at 399,950 to 400,024
_001915
TX73_001920: TX73_001920 - ATP-binding protein, at 400,117 to 402,720
_001920
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.955 kb on - strand, within TX73_001905 at 398.957 kb on - strand, within TX73_001905 at 398.968 kb on + strand, within TX73_001905 at 398.977 kb on - strand, within TX73_001905 at 398.983 kb on - strand, within TX73_001905 at 398.988 kb on - strand, within TX73_001905 at 399.012 kb on + strand, within TX73_001905 at 399.018 kb on + strand, within TX73_001905 at 399.019 kb on - strand, within TX73_001905 at 399.024 kb on - strand, within TX73_001905 at 399.026 kb on - strand, within TX73_001905 at 399.026 kb on - strand, within TX73_001905 at 399.037 kb on + strand, within TX73_001905 at 399.060 kb on + strand, within TX73_001905 at 399.073 kb on + strand, within TX73_001905 at 399.081 kb on - strand, within TX73_001905 at 399.103 kb on + strand, within TX73_001905 at 399.111 kb on - strand, within TX73_001905 at 399.111 kb on - strand, within TX73_001905 at 399.112 kb on - strand, within TX73_001905 at 399.112 kb on - strand, within TX73_001905 at 399.143 kb on + strand, within TX73_001905 at 399.149 kb on - strand, within TX73_001905 at 399.159 kb on - strand, within TX73_001905 at 399.159 kb on - strand, within TX73_001905 at 399.192 kb on + strand, within TX73_001905 at 399.237 kb on + strand at 399.237 kb on + strand at 399.237 kb on + strand at 399.237 kb on + strand at 399.242 kb on + strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.245 kb on - strand at 399.262 kb on - strand at 399.263 kb on + strand at 399.280 kb on + strand at 399.292 kb on + strand at 399.292 kb on + strand at 399.333 kb on + strand at 399.333 kb on + strand at 399.333 kb on + strand at 399.341 kb on - strand at 399.343 kb on + strand at 399.351 kb on - strand at 399.378 kb on + strand at 399.383 kb on + strand at 399.387 kb on - strand at 399.395 kb on - strand at 399.397 kb on + strand at 399.404 kb on + strand at 399.404 kb on + strand at 399.404 kb on + strand at 399.404 kb on + strand at 399.407 kb on - strand at 399.408 kb on + strand at 399.423 kb on + strand, within TX73_001910 at 399.431 kb on - strand, within TX73_001910 at 399.431 kb on - strand, within TX73_001910 at 399.431 kb on - strand, within TX73_001910 at 399.457 kb on + strand, within TX73_001910 at 399.457 kb on + strand, within TX73_001910 at 399.460 kb on - strand, within TX73_001910 at 399.462 kb on + strand, within TX73_001910 at 399.462 kb on + strand, within TX73_001910 at 399.465 kb on - strand, within TX73_001910 at 399.478 kb on - strand, within TX73_001910 at 399.495 kb on - strand, within TX73_001910 at 399.495 kb on - strand, within TX73_001910 at 399.497 kb on - strand, within TX73_001910 at 399.503 kb on + strand, within TX73_001910 at 399.511 kb on - strand, within TX73_001910 at 399.511 kb on - strand, within TX73_001910 at 399.544 kb on + strand, within TX73_001910 at 399.545 kb on - strand, within TX73_001910 at 399.547 kb on + strand, within TX73_001910 at 399.548 kb on + strand, within TX73_001910 at 399.548 kb on + strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.552 kb on - strand, within TX73_001910 at 399.554 kb on + strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.556 kb on - strand, within TX73_001910 at 399.562 kb on - strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.564 kb on + strand, within TX73_001910 at 399.572 kb on - strand, within TX73_001910 at 399.590 kb on - strand, within TX73_001910 at 399.591 kb on - strand, within TX73_001910 at 399.606 kb on + strand, within TX73_001910 at 399.608 kb on + strand, within TX73_001910 at 399.610 kb on + strand, within TX73_001910 at 399.638 kb on + strand, within TX73_001910 at 399.672 kb on + strand, within TX73_001910 at 399.684 kb on - strand at 399.685 kb on + strand at 399.685 kb on + strand at 399.687 kb on + strand at 399.693 kb on - strand at 399.713 kb on - strand at 399.728 kb on + strand at 399.750 kb on + strand at 399.757 kb on + strand at 399.763 kb on + strand at 399.765 kb on - strand at 399.776 kb on + strand at 399.792 kb on - strand at 399.805 kb on + strand at 399.805 kb on + strand at 399.816 kb on + strand at 399.817 kb on - strand at 399.826 kb on + strand at 399.826 kb on + strand at 399.827 kb on - strand at 399.834 kb on - strand at 399.863 kb on + strand at 399.868 kb on + strand at 399.871 kb on - strand at 399.906 kb on + strand at 399.944 kb on - strand at 399.950 kb on - strand at 399.961 kb on - strand, within TX73_001915 at 399.965 kb on - strand, within TX73_001915 at 399.978 kb on + strand, within TX73_001915 at 399.980 kb on + strand, within TX73_001915 at 399.982 kb on + strand, within TX73_001915 at 399.982 kb on + strand, within TX73_001915 at 399.988 kb on - strand, within TX73_001915 at 399.988 kb on - strand, within TX73_001915 at 399.990 kb on - strand, within TX73_001915 at 399.993 kb on + strand, within TX73_001915 at 400.009 kb on + strand, within TX73_001915 at 400.009 kb on + strand, within TX73_001915 at 400.009 kb on + strand, within TX73_001915 at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.017 kb on - strand at 400.046 kb on + strand at 400.084 kb on + strand at 400.131 kb on + strand at 400.139 kb on - strand at 400.141 kb on - strand at 400.149 kb on + strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.157 kb on - strand at 400.165 kb on + strand at 400.189 kb on - strand at 400.206 kb on - strand at 400.245 kb on + strand at 400.258 kb on + strand at 400.266 kb on - strand at 400.277 kb on + strand at 400.281 kb on - strand at 400.319 kb on + strand at 400.346 kb on - strand at 400.390 kb on + strand, within TX73_001920 at 400.402 kb on + strand, within TX73_001920 at 400.402 kb on + strand, within TX73_001920 at 400.497 kb on + strand, within TX73_001920 at 400.498 kb on - strand, within TX73_001920 at 400.523 kb on + strand, within TX73_001920 at 400.531 kb on - strand, within TX73_001920 at 400.536 kb on + strand, within TX73_001920 at 400.648 kb on - strand, within TX73_001920 at 400.682 kb on - strand, within TX73_001920 at 400.751 kb on - strand, within TX73_001920 at 400.828 kb on + strand, within TX73_001920 at 400.883 kb on + strand, within TX73_001920 at 400.914 kb on + strand, within TX73_001920 at 400.924 kb on + strand, within TX73_001920 at 400.932 kb on - strand, within TX73_001920 at 400.932 kb on - strand, within TX73_001920
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic remove 398,955 - TX73_001905 0.64 +0.7 398,957 - TX73_001905 0.64 +0.2 398,968 + TX73_001905 0.66 +0.3 398,977 - TX73_001905 0.66 +0.8 398,983 - TX73_001905 0.67 +1.8 398,988 - TX73_001905 0.68 +1.4 399,012 + TX73_001905 0.70 -0.6 399,018 + TX73_001905 0.71 +0.4 399,019 - TX73_001905 0.71 +0.3 399,024 - TX73_001905 0.71 +0.5 399,026 - TX73_001905 0.71 -1.0 399,026 - TX73_001905 0.71 +1.0 399,037 + TX73_001905 0.73 +1.0 399,060 + TX73_001905 0.75 +0.3 399,073 + TX73_001905 0.76 +0.8 399,081 - TX73_001905 0.77 +0.9 399,103 + TX73_001905 0.79 +0.4 399,111 - TX73_001905 0.80 +0.9 399,111 - TX73_001905 0.80 -0.0 399,112 - TX73_001905 0.80 -0.4 399,112 - TX73_001905 0.80 +0.9 399,143 + TX73_001905 0.83 -0.8 399,149 - TX73_001905 0.84 +1.0 399,159 - TX73_001905 0.85 +0.1 399,159 - TX73_001905 0.85 +0.8 399,192 + TX73_001905 0.89 +0.3 399,237 + +0.7 399,237 + -0.4 399,237 + +0.2 399,237 + +0.8 399,242 + +0.3 399,245 - -0.3 399,245 - +0.7 399,245 - +0.3 399,262 - +0.2 399,263 + +0.2 399,280 + -0.8 399,292 + -0.5 399,292 + -0.8 399,333 + -0.3 399,333 + -0.1 399,333 + +0.4 399,341 - -0.2 399,343 + +1.2 399,351 - -0.4 399,378 + +0.5 399,383 + +1.4 399,387 - +0.5 399,395 - +0.8 399,397 + +0.7 399,404 + +1.5 399,404 + +0.9 399,404 + +0.3 399,404 + +0.2 399,407 - +1.1 399,408 + -0.0 399,423 + TX73_001910 0.14 +0.8 399,431 - TX73_001910 0.16 +0.4 399,431 - TX73_001910 0.16 +0.8 399,431 - TX73_001910 0.16 +1.0 399,457 + TX73_001910 0.24 +1.7 399,457 + TX73_001910 0.24 +0.5 399,460 - TX73_001910 0.25 +0.1 399,462 + TX73_001910 0.26 +1.3 399,462 + TX73_001910 0.26 +0.8 399,465 - TX73_001910 0.26 -0.0 399,478 - TX73_001910 0.30 +0.6 399,495 - TX73_001910 0.35 +1.0 399,495 - TX73_001910 0.35 +0.5 399,497 - TX73_001910 0.36 +0.1 399,503 + TX73_001910 0.38 +0.1 399,511 - TX73_001910 0.40 +1.5 399,511 - TX73_001910 0.40 +1.0 399,544 + TX73_001910 0.50 +0.8 399,545 - TX73_001910 0.50 +0.6 399,547 + TX73_001910 0.51 +1.1 399,548 + TX73_001910 0.51 +1.2 399,548 + TX73_001910 0.51 +0.8 399,552 - TX73_001910 0.52 +0.8 399,552 - TX73_001910 0.52 -0.4 399,552 - TX73_001910 0.52 +1.5 399,552 - TX73_001910 0.52 +0.2 399,554 + TX73_001910 0.53 +1.3 399,556 - TX73_001910 0.54 +1.5 399,556 - TX73_001910 0.54 +0.0 399,556 - TX73_001910 0.54 +0.1 399,556 - TX73_001910 0.54 +0.8 399,562 - TX73_001910 0.55 +0.9 399,564 + TX73_001910 0.56 +0.8 399,564 + TX73_001910 0.56 +0.4 399,564 + TX73_001910 0.56 +0.6 399,564 + TX73_001910 0.56 +1.2 399,564 + TX73_001910 0.56 +0.4 399,564 + TX73_001910 0.56 +1.5 399,564 + TX73_001910 0.56 +0.7 399,564 + TX73_001910 0.56 +1.1 399,564 + TX73_001910 0.56 +1.5 399,564 + TX73_001910 0.56 +0.9 399,572 - TX73_001910 0.58 +0.7 399,590 - TX73_001910 0.64 +0.2 399,591 - TX73_001910 0.64 +0.4 399,606 + TX73_001910 0.68 +1.5 399,608 + TX73_001910 0.69 +1.0 399,610 + TX73_001910 0.70 +0.8 399,638 + TX73_001910 0.78 +1.9 399,672 + TX73_001910 0.88 +0.0 399,684 - +0.5 399,685 + +0.3 399,685 + +1.2 399,687 + +0.9 399,693 - -0.3 399,713 - +0.1 399,728 + -0.2 399,750 + +0.6 399,757 + +0.3 399,763 + -1.1 399,765 - -0.3 399,776 + -0.5 399,792 - +0.2 399,805 + +0.2 399,805 + -0.8 399,816 + -0.1 399,817 - -0.5 399,826 + +0.4 399,826 + -0.1 399,827 - -0.5 399,834 - +0.5 399,863 + +0.3 399,868 + +1.0 399,871 - -0.3 399,906 + -0.3 399,944 - +0.7 399,950 - -0.2 399,961 - TX73_001915 0.15 +0.6 399,965 - TX73_001915 0.20 +0.6 399,978 + TX73_001915 0.37 +0.7 399,980 + TX73_001915 0.40 -0.0 399,982 + TX73_001915 0.43 +0.8 399,982 + TX73_001915 0.43 +0.0 399,988 - TX73_001915 0.51 -0.1 399,988 - TX73_001915 0.51 -0.9 399,990 - TX73_001915 0.53 +0.8 399,993 + TX73_001915 0.57 -0.1 400,009 + TX73_001915 0.79 +0.5 400,009 + TX73_001915 0.79 -0.1 400,009 + TX73_001915 0.79 +0.7 400,017 - -1.8 400,017 - +0.1 400,017 - -0.8 400,017 - -0.2 400,046 + +0.8 400,084 + -0.3 400,131 + +0.2 400,139 - -0.0 400,141 - +0.5 400,149 + -0.4 400,157 - -0.6 400,157 - +0.4 400,157 - +0.9 400,165 + +0.4 400,189 - -0.2 400,206 - -0.5 400,245 + +0.5 400,258 + -0.4 400,266 - +0.4 400,277 + -0.3 400,281 - +0.5 400,319 + -1.1 400,346 - +1.5 400,390 + TX73_001920 0.10 +0.0 400,402 + TX73_001920 0.11 -0.5 400,402 + TX73_001920 0.11 +0.4 400,497 + TX73_001920 0.15 -0.7 400,498 - TX73_001920 0.15 +1.2 400,523 + TX73_001920 0.16 -0.4 400,531 - TX73_001920 0.16 -0.5 400,536 + TX73_001920 0.16 +0.6 400,648 - TX73_001920 0.20 +0.6 400,682 - TX73_001920 0.22 -0.3 400,751 - TX73_001920 0.24 +0.1 400,828 + TX73_001920 0.27 -0.7 400,883 + TX73_001920 0.29 +0.1 400,914 + TX73_001920 0.31 -0.3 400,924 + TX73_001920 0.31 +0.7 400,932 - TX73_001920 0.31 -0.1 400,932 - TX73_001920 0.31 +0.2
Or see this region's nucleotide sequence