Experiment: 4-Aminobutyric (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001515 and TX73_001520 are separated by 172 nucleotides TX73_001520 and TX73_001525 are separated by 27 nucleotides TX73_001525 and TX73_001530 are separated by 171 nucleotides
TX73_001515: TX73_001515 - ParB/RepB/Spo0J family partition protein, at 320,346 to 321,236
_001515
TX73_001520: TX73_001520 - ParA family protein, at 321,409 to 322,263
_001520
TX73_001525: TX73_001525 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 322,291 to 322,962
_001525
TX73_001530: TX73_001530 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 323,134 to 325,002
_001530
Position (kb) 321
322
323 Strain fitness (log2 ratio) -2
-1
0
1
2 at 321.253 kb on - strand at 321.257 kb on + strand at 321.264 kb on + strand at 321.272 kb on - strand at 321.346 kb on + strand at 321.346 kb on + strand at 321.346 kb on + strand at 321.385 kb on + strand at 321.388 kb on - strand at 321.407 kb on + strand at 321.415 kb on - strand at 322.280 kb on - strand at 322.283 kb on + strand at 322.287 kb on + strand at 322.295 kb on - strand at 322.330 kb on + strand at 322.332 kb on - strand at 322.333 kb on - strand at 322.338 kb on - strand at 322.349 kb on - strand at 322.357 kb on - strand at 322.357 kb on - strand at 322.410 kb on + strand, within TX73_001525 at 322.429 kb on - strand, within TX73_001525 at 322.442 kb on + strand, within TX73_001525 at 322.449 kb on - strand, within TX73_001525 at 322.450 kb on + strand, within TX73_001525 at 322.453 kb on + strand, within TX73_001525 at 322.471 kb on + strand, within TX73_001525 at 322.477 kb on + strand, within TX73_001525 at 322.478 kb on + strand, within TX73_001525 at 322.479 kb on - strand, within TX73_001525 at 322.482 kb on + strand, within TX73_001525 at 322.483 kb on + strand, within TX73_001525 at 322.483 kb on + strand, within TX73_001525 at 322.483 kb on + strand, within TX73_001525 at 322.483 kb on + strand, within TX73_001525 at 322.485 kb on + strand, within TX73_001525 at 322.485 kb on - strand, within TX73_001525 at 322.490 kb on - strand, within TX73_001525 at 322.491 kb on - strand, within TX73_001525 at 322.491 kb on - strand, within TX73_001525 at 322.491 kb on - strand, within TX73_001525 at 322.491 kb on - strand, within TX73_001525 at 322.491 kb on - strand, within TX73_001525 at 322.491 kb on - strand, within TX73_001525 at 322.493 kb on - strand, within TX73_001525 at 322.508 kb on - strand, within TX73_001525 at 322.516 kb on + strand, within TX73_001525 at 322.547 kb on + strand, within TX73_001525 at 322.566 kb on + strand, within TX73_001525 at 322.568 kb on + strand, within TX73_001525 at 322.580 kb on - strand, within TX73_001525 at 322.580 kb on - strand, within TX73_001525 at 322.586 kb on + strand, within TX73_001525 at 322.616 kb on + strand, within TX73_001525 at 322.618 kb on + strand, within TX73_001525 at 322.626 kb on - strand, within TX73_001525 at 322.638 kb on - strand, within TX73_001525 at 322.639 kb on - strand, within TX73_001525 at 322.639 kb on - strand, within TX73_001525 at 322.639 kb on - strand, within TX73_001525 at 322.640 kb on + strand, within TX73_001525 at 322.640 kb on + strand, within TX73_001525 at 322.642 kb on + strand, within TX73_001525 at 322.647 kb on + strand, within TX73_001525 at 322.652 kb on + strand, within TX73_001525 at 322.670 kb on + strand, within TX73_001525 at 322.670 kb on + strand, within TX73_001525 at 322.670 kb on + strand, within TX73_001525 at 322.675 kb on + strand, within TX73_001525 at 322.675 kb on + strand, within TX73_001525 at 322.675 kb on + strand, within TX73_001525 at 322.675 kb on + strand, within TX73_001525 at 322.675 kb on + strand, within TX73_001525 at 322.675 kb on + strand, within TX73_001525 at 322.675 kb on + strand, within TX73_001525 at 322.678 kb on - strand, within TX73_001525 at 322.680 kb on + strand, within TX73_001525 at 322.680 kb on + strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.683 kb on - strand, within TX73_001525 at 322.715 kb on - strand, within TX73_001525 at 322.737 kb on + strand, within TX73_001525 at 322.737 kb on + strand, within TX73_001525 at 322.742 kb on + strand, within TX73_001525 at 322.745 kb on - strand, within TX73_001525 at 322.745 kb on - strand, within TX73_001525 at 322.745 kb on - strand, within TX73_001525 at 322.745 kb on - strand, within TX73_001525 at 322.750 kb on - strand, within TX73_001525 at 322.750 kb on - strand, within TX73_001525 at 322.771 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.778 kb on + strand, within TX73_001525 at 322.786 kb on - strand, within TX73_001525 at 322.786 kb on - strand, within TX73_001525 at 322.786 kb on - strand, within TX73_001525 at 322.786 kb on - strand, within TX73_001525 at 322.786 kb on - strand, within TX73_001525 at 322.794 kb on + strand, within TX73_001525 at 322.795 kb on + strand, within TX73_001525 at 322.795 kb on + strand, within TX73_001525 at 322.795 kb on + strand, within TX73_001525 at 322.803 kb on - strand, within TX73_001525 at 322.807 kb on + strand, within TX73_001525 at 322.812 kb on + strand, within TX73_001525 at 322.812 kb on + strand, within TX73_001525 at 322.812 kb on + strand, within TX73_001525 at 322.812 kb on + strand, within TX73_001525 at 322.812 kb on + strand, within TX73_001525 at 322.815 kb on - strand, within TX73_001525 at 322.817 kb on + strand, within TX73_001525 at 322.817 kb on + strand, within TX73_001525 at 322.817 kb on + strand, within TX73_001525 at 322.817 kb on + strand, within TX73_001525 at 322.817 kb on + strand, within TX73_001525 at 322.817 kb on + strand, within TX73_001525 at 322.817 kb on + strand, within TX73_001525 at 322.819 kb on - strand, within TX73_001525 at 322.820 kb on - strand, within TX73_001525 at 322.820 kb on - strand, within TX73_001525 at 322.821 kb on - strand, within TX73_001525 at 322.825 kb on - strand, within TX73_001525 at 322.825 kb on - strand, within TX73_001525 at 322.832 kb on + strand, within TX73_001525 at 322.832 kb on + strand, within TX73_001525 at 322.845 kb on - strand, within TX73_001525 at 322.847 kb on + strand, within TX73_001525 at 322.881 kb on + strand, within TX73_001525 at 322.894 kb on - strand, within TX73_001525 at 322.898 kb on + strand at 322.902 kb on - strand at 322.912 kb on + strand at 322.918 kb on + strand at 322.923 kb on + strand at 322.943 kb on + strand at 322.944 kb on + strand at 322.944 kb on + strand at 322.944 kb on + strand at 322.944 kb on + strand at 322.944 kb on + strand at 322.944 kb on - strand at 322.952 kb on - strand at 322.952 kb on - strand at 322.952 kb on - strand at 322.959 kb on + strand at 322.967 kb on - strand at 322.972 kb on - strand at 322.987 kb on - strand at 322.994 kb on - strand at 323.051 kb on - strand at 323.051 kb on - strand at 323.062 kb on + strand at 323.097 kb on + strand at 323.098 kb on - strand at 323.098 kb on - strand at 323.098 kb on - strand at 323.100 kb on - strand at 323.126 kb on + strand at 323.131 kb on + strand at 323.131 kb on + strand at 323.131 kb on + strand at 323.131 kb on + strand at 323.131 kb on + strand at 323.134 kb on - strand at 323.139 kb on - strand at 323.139 kb on - strand at 323.139 kb on - strand at 323.139 kb on - strand at 323.139 kb on - strand at 323.139 kb on - strand at 323.139 kb on - strand at 323.142 kb on - strand at 323.169 kb on + strand at 323.177 kb on - strand at 323.196 kb on + strand at 323.198 kb on + strand at 323.201 kb on + strand at 323.210 kb on - strand at 323.212 kb on + strand at 323.215 kb on + strand at 323.218 kb on - strand at 323.218 kb on - strand at 323.224 kb on + strand at 323.229 kb on + strand at 323.233 kb on + strand at 323.237 kb on + strand at 323.237 kb on + strand at 323.237 kb on - strand at 323.237 kb on - strand at 323.237 kb on - strand at 323.239 kb on + strand at 323.245 kb on - strand at 323.245 kb on - strand at 323.245 kb on - strand at 323.245 kb on - strand at 323.245 kb on - strand at 323.247 kb on - strand at 323.252 kb on + strand at 323.252 kb on + strand at 323.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric (C); anaerobic remove 321,253 - -0.0 321,257 + +0.0 321,264 + +0.4 321,272 - +1.3 321,346 + +0.8 321,346 + +0.5 321,346 + -0.4 321,385 + -0.4 321,388 - -1.3 321,407 + -0.3 321,415 - -0.4 322,280 - +0.3 322,283 + -0.2 322,287 + +0.4 322,295 - +1.5 322,330 + +1.1 322,332 - -0.6 322,333 - +0.6 322,338 - -1.6 322,349 - -2.1 322,357 - -0.5 322,357 - -0.0 322,410 + TX73_001525 0.18 +0.4 322,429 - TX73_001525 0.21 +0.3 322,442 + TX73_001525 0.22 +0.2 322,449 - TX73_001525 0.24 +0.9 322,450 + TX73_001525 0.24 +1.6 322,453 + TX73_001525 0.24 -0.7 322,471 + TX73_001525 0.27 +0.1 322,477 + TX73_001525 0.28 -0.9 322,478 + TX73_001525 0.28 +0.6 322,479 - TX73_001525 0.28 +0.1 322,482 + TX73_001525 0.28 +0.1 322,483 + TX73_001525 0.29 +0.3 322,483 + TX73_001525 0.29 +0.2 322,483 + TX73_001525 0.29 -0.0 322,483 + TX73_001525 0.29 -1.7 322,485 + TX73_001525 0.29 -1.7 322,485 - TX73_001525 0.29 -0.7 322,490 - TX73_001525 0.30 -0.5 322,491 - TX73_001525 0.30 -1.6 322,491 - TX73_001525 0.30 -1.5 322,491 - TX73_001525 0.30 +0.6 322,491 - TX73_001525 0.30 +0.3 322,491 - TX73_001525 0.30 +0.3 322,491 - TX73_001525 0.30 -1.0 322,493 - TX73_001525 0.30 +0.8 322,508 - TX73_001525 0.32 +0.9 322,516 + TX73_001525 0.33 +0.2 322,547 + TX73_001525 0.38 +0.1 322,566 + TX73_001525 0.41 +0.3 322,568 + TX73_001525 0.41 +0.3 322,580 - TX73_001525 0.43 +0.3 322,580 - TX73_001525 0.43 +0.1 322,586 + TX73_001525 0.44 -2.2 322,616 + TX73_001525 0.48 +0.7 322,618 + TX73_001525 0.49 +1.5 322,626 - TX73_001525 0.50 +0.3 322,638 - TX73_001525 0.52 -0.4 322,639 - TX73_001525 0.52 -0.9 322,639 - TX73_001525 0.52 +0.1 322,639 - TX73_001525 0.52 -0.6 322,640 + TX73_001525 0.52 -1.5 322,640 + TX73_001525 0.52 -0.3 322,642 + TX73_001525 0.52 +0.5 322,647 + TX73_001525 0.53 +0.9 322,652 + TX73_001525 0.54 +0.2 322,670 + TX73_001525 0.56 -0.6 322,670 + TX73_001525 0.56 -0.0 322,670 + TX73_001525 0.56 +0.8 322,675 + TX73_001525 0.57 -0.5 322,675 + TX73_001525 0.57 +0.1 322,675 + TX73_001525 0.57 +1.0 322,675 + TX73_001525 0.57 +0.1 322,675 + TX73_001525 0.57 +0.4 322,675 + TX73_001525 0.57 +0.9 322,675 + TX73_001525 0.57 -0.5 322,678 - TX73_001525 0.58 -1.0 322,680 + TX73_001525 0.58 -0.7 322,680 + TX73_001525 0.58 +0.5 322,683 - TX73_001525 0.58 -0.2 322,683 - TX73_001525 0.58 +0.3 322,683 - TX73_001525 0.58 -0.1 322,683 - TX73_001525 0.58 +0.3 322,683 - TX73_001525 0.58 +0.3 322,683 - TX73_001525 0.58 +0.2 322,683 - TX73_001525 0.58 +0.7 322,683 - TX73_001525 0.58 -0.1 322,683 - TX73_001525 0.58 +0.1 322,715 - TX73_001525 0.63 +1.6 322,737 + TX73_001525 0.66 +0.6 322,737 + TX73_001525 0.66 +0.6 322,742 + TX73_001525 0.67 +0.0 322,745 - TX73_001525 0.68 -0.7 322,745 - TX73_001525 0.68 -0.9 322,745 - TX73_001525 0.68 +0.1 322,745 - TX73_001525 0.68 -0.6 322,750 - TX73_001525 0.68 -0.1 322,750 - TX73_001525 0.68 -0.2 322,771 + TX73_001525 0.71 -0.3 322,778 + TX73_001525 0.72 -0.3 322,778 + TX73_001525 0.72 -1.6 322,778 + TX73_001525 0.72 -0.7 322,778 + TX73_001525 0.72 +0.1 322,778 + TX73_001525 0.72 +0.9 322,778 + TX73_001525 0.72 +0.3 322,778 + TX73_001525 0.72 +0.5 322,778 + TX73_001525 0.72 +0.3 322,786 - TX73_001525 0.74 +0.2 322,786 - TX73_001525 0.74 -1.5 322,786 - TX73_001525 0.74 +0.3 322,786 - TX73_001525 0.74 +0.2 322,786 - TX73_001525 0.74 -0.8 322,794 + TX73_001525 0.75 +1.1 322,795 + TX73_001525 0.75 +0.5 322,795 + TX73_001525 0.75 +0.9 322,795 + TX73_001525 0.75 +0.2 322,803 - TX73_001525 0.76 -0.1 322,807 + TX73_001525 0.77 -0.0 322,812 + TX73_001525 0.78 +1.1 322,812 + TX73_001525 0.78 -1.0 322,812 + TX73_001525 0.78 -0.3 322,812 + TX73_001525 0.78 +0.2 322,812 + TX73_001525 0.78 +0.2 322,815 - TX73_001525 0.78 +0.5 322,817 + TX73_001525 0.78 -0.7 322,817 + TX73_001525 0.78 +0.2 322,817 + TX73_001525 0.78 -1.7 322,817 + TX73_001525 0.78 +1.7 322,817 + TX73_001525 0.78 -1.6 322,817 + TX73_001525 0.78 +1.3 322,817 + TX73_001525 0.78 +0.5 322,819 - TX73_001525 0.79 -0.5 322,820 - TX73_001525 0.79 -2.5 322,820 - TX73_001525 0.79 +1.8 322,821 - TX73_001525 0.79 +0.8 322,825 - TX73_001525 0.79 +1.1 322,825 - TX73_001525 0.79 -0.7 322,832 + TX73_001525 0.81 +0.0 322,832 + TX73_001525 0.81 +0.3 322,845 - TX73_001525 0.82 -0.6 322,847 + TX73_001525 0.83 +0.4 322,881 + TX73_001525 0.88 -0.0 322,894 - TX73_001525 0.90 +0.5 322,898 + +0.0 322,902 - +1.9 322,912 + +0.3 322,918 + +0.4 322,923 + -0.3 322,943 + +0.6 322,944 + +0.6 322,944 + +0.5 322,944 + +0.8 322,944 + +0.3 322,944 + +0.6 322,944 - +0.6 322,952 - +0.2 322,952 - +0.8 322,952 - +0.2 322,959 + +0.0 322,967 - -0.6 322,972 - +0.4 322,987 - +0.6 322,994 - -0.3 323,051 - -0.2 323,051 - +1.3 323,062 + +0.1 323,097 + +0.2 323,098 - +0.7 323,098 - -0.2 323,098 - +0.6 323,100 - -1.4 323,126 + -0.0 323,131 + -1.1 323,131 + +0.2 323,131 + -0.3 323,131 + -0.1 323,131 + -0.8 323,134 - -0.6 323,139 - +0.6 323,139 - -1.7 323,139 - +0.8 323,139 - -0.7 323,139 - +0.4 323,139 - +0.3 323,139 - +0.8 323,142 - -0.1 323,169 + +0.2 323,177 - -0.4 323,196 + -0.5 323,198 + -1.7 323,201 + -1.1 323,210 - -0.4 323,212 + -0.2 323,215 + -0.3 323,218 - -0.6 323,218 - -1.0 323,224 + -0.4 323,229 + -0.4 323,233 + -0.6 323,237 + -1.3 323,237 + -0.8 323,237 - -0.4 323,237 - -1.0 323,237 - -0.4 323,239 + -0.6 323,245 - -0.6 323,245 - -0.9 323,245 - -1.6 323,245 - -0.4 323,245 - -1.2 323,247 - -1.3 323,252 + -0.3 323,252 + -0.9 323,260 - -0.2
Or see this region's nucleotide sequence