Experiment: starvation expt 4; 14 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003655 and TX73_003660 overlap by 23 nucleotides TX73_003660 and TX73_003665 are separated by 99 nucleotides TX73_003665 and TX73_003670 are separated by 105 nucleotides TX73_003670 and TX73_003675 are separated by 171 nucleotides
TX73_003655: TX73_003655 - GIY-YIG nuclease family protein, at 779,579 to 780,055
_003655
TX73_003660: TX73_003660 - divalent-cation tolerance protein CutA, at 780,033 to 780,356
_003660
TX73_003665: TX73_003665 - zinc ribbon domain-containing protein, at 780,456 to 780,671
_003665
TX73_003670: TX73_003670 - hypothetical protein, at 780,777 to 781,289
_003670
TX73_003675: TX73_003675 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 781,461 to 781,949
_003675
Position (kb) 780
781
782 Strain fitness (log2 ratio) -2
-1
0
1
2 at 779.801 kb on + strand, within TX73_003655 at 779.821 kb on + strand, within TX73_003655 at 779.821 kb on + strand, within TX73_003655 at 779.829 kb on - strand, within TX73_003655 at 779.829 kb on - strand, within TX73_003655 at 779.829 kb on - strand, within TX73_003655 at 779.830 kb on + strand, within TX73_003655 at 779.843 kb on - strand, within TX73_003655 at 779.939 kb on + strand, within TX73_003655 at 779.943 kb on - strand, within TX73_003655 at 779.945 kb on - strand, within TX73_003655 at 779.955 kb on - strand, within TX73_003655 at 779.990 kb on - strand, within TX73_003655 at 780.000 kb on - strand, within TX73_003655 at 780.008 kb on + strand at 780.026 kb on - strand at 780.038 kb on - strand at 780.093 kb on + strand, within TX73_003660 at 780.093 kb on + strand, within TX73_003660 at 780.093 kb on + strand, within TX73_003660 at 780.107 kb on + strand, within TX73_003660 at 780.120 kb on + strand, within TX73_003660 at 780.139 kb on + strand, within TX73_003660 at 780.172 kb on + strand, within TX73_003660 at 780.172 kb on + strand, within TX73_003660 at 780.180 kb on - strand, within TX73_003660 at 780.180 kb on - strand, within TX73_003660 at 780.199 kb on - strand, within TX73_003660 at 780.238 kb on - strand, within TX73_003660 at 780.294 kb on + strand, within TX73_003660 at 780.310 kb on - strand, within TX73_003660 at 780.330 kb on - strand at 780.339 kb on + strand at 780.347 kb on - strand at 780.376 kb on + strand at 780.384 kb on - strand at 780.391 kb on + strand at 780.432 kb on + strand at 780.447 kb on - strand at 780.448 kb on + strand at 780.505 kb on - strand, within TX73_003665 at 780.507 kb on + strand, within TX73_003665 at 780.512 kb on + strand, within TX73_003665 at 780.520 kb on - strand, within TX73_003665 at 780.520 kb on - strand, within TX73_003665 at 780.533 kb on + strand, within TX73_003665 at 780.564 kb on - strand, within TX73_003665 at 780.590 kb on + strand, within TX73_003665 at 780.598 kb on - strand, within TX73_003665 at 780.601 kb on + strand, within TX73_003665 at 780.609 kb on - strand, within TX73_003665 at 780.614 kb on + strand, within TX73_003665 at 780.654 kb on + strand at 780.659 kb on + strand at 780.664 kb on + strand at 780.667 kb on - strand at 780.667 kb on - strand at 780.683 kb on + strand at 780.707 kb on + strand at 780.746 kb on + strand at 780.766 kb on - strand at 780.780 kb on + strand at 780.783 kb on - strand at 780.789 kb on + strand at 780.791 kb on - strand at 780.798 kb on - strand at 780.803 kb on - strand at 780.805 kb on + strand at 780.813 kb on - strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.815 kb on + strand at 780.823 kb on - strand at 780.823 kb on - strand at 780.823 kb on - strand at 780.823 kb on - strand at 780.823 kb on - strand at 780.835 kb on + strand, within TX73_003670 at 780.850 kb on + strand, within TX73_003670 at 780.900 kb on - strand, within TX73_003670 at 780.945 kb on - strand, within TX73_003670 at 780.945 kb on - strand, within TX73_003670 at 780.950 kb on - strand, within TX73_003670 at 780.994 kb on + strand, within TX73_003670 at 781.038 kb on + strand, within TX73_003670 at 781.038 kb on + strand, within TX73_003670 at 781.046 kb on + strand, within TX73_003670 at 781.056 kb on + strand, within TX73_003670 at 781.056 kb on + strand, within TX73_003670 at 781.064 kb on - strand, within TX73_003670 at 781.064 kb on - strand, within TX73_003670 at 781.069 kb on - strand, within TX73_003670 at 781.069 kb on - strand, within TX73_003670 at 781.147 kb on - strand, within TX73_003670 at 781.147 kb on - strand, within TX73_003670 at 781.161 kb on + strand, within TX73_003670 at 781.169 kb on - strand, within TX73_003670 at 781.180 kb on + strand, within TX73_003670 at 781.185 kb on + strand, within TX73_003670 at 781.185 kb on - strand, within TX73_003670 at 781.235 kb on - strand, within TX73_003670 at 781.249 kb on - strand at 781.274 kb on + strand at 781.274 kb on + strand at 781.274 kb on + strand at 781.286 kb on - strand at 781.331 kb on - strand at 781.401 kb on + strand at 781.414 kb on - strand at 781.452 kb on + strand at 781.459 kb on + strand at 781.459 kb on + strand at 781.460 kb on - strand at 781.467 kb on - strand at 781.474 kb on + strand at 781.481 kb on - strand at 781.518 kb on - strand, within TX73_003675 at 781.520 kb on - strand, within TX73_003675 at 781.525 kb on + strand, within TX73_003675 at 781.525 kb on + strand, within TX73_003675 at 781.533 kb on - strand, within TX73_003675 at 781.547 kb on + strand, within TX73_003675 at 781.548 kb on - strand, within TX73_003675 at 781.560 kb on - strand, within TX73_003675 at 781.562 kb on + strand, within TX73_003675 at 781.570 kb on - strand, within TX73_003675 at 781.602 kb on - strand, within TX73_003675 at 781.618 kb on - strand, within TX73_003675 at 781.623 kb on - strand, within TX73_003675 at 781.626 kb on + strand, within TX73_003675 at 781.641 kb on + strand, within TX73_003675 at 781.659 kb on - strand, within TX73_003675 at 781.666 kb on - strand, within TX73_003675 at 781.666 kb on - strand, within TX73_003675 at 781.666 kb on - strand, within TX73_003675 at 781.670 kb on + strand, within TX73_003675 at 781.696 kb on + strand, within TX73_003675 at 781.696 kb on + strand, within TX73_003675 at 781.696 kb on + strand, within TX73_003675 at 781.707 kb on + strand, within TX73_003675 at 781.737 kb on + strand, within TX73_003675 at 781.739 kb on - strand, within TX73_003675 at 781.745 kb on - strand, within TX73_003675 at 781.753 kb on + strand, within TX73_003675 at 781.753 kb on + strand, within TX73_003675 at 781.883 kb on + strand, within TX73_003675 at 781.883 kb on + strand, within TX73_003675 at 781.886 kb on - strand, within TX73_003675 at 781.901 kb on + strand at 781.901 kb on + strand at 781.909 kb on + strand at 781.909 kb on - strand at 781.913 kb on + strand at 781.917 kb on - strand at 781.935 kb on - strand at 781.959 kb on - strand at 781.967 kb on - strand at 781.967 kb on - strand at 782.018 kb on - strand at 782.071 kb on + strand at 782.075 kb on + strand at 782.112 kb on - strand at 782.112 kb on - strand at 782.124 kb on - strand at 782.133 kb on - strand at 782.137 kb on + strand at 782.144 kb on + strand at 782.203 kb on + strand at 782.203 kb on + strand at 782.218 kb on - strand at 782.239 kb on - strand at 782.244 kb on - strand at 782.246 kb on + strand at 782.251 kb on + strand at 782.254 kb on - strand at 782.255 kb on - strand at 782.260 kb on + strand at 782.263 kb on - strand at 782.265 kb on - strand at 782.265 kb on - strand at 782.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 4; 14 days; outgrowth in CAAc remove 779,801 + TX73_003655 0.47 +0.2 779,821 + TX73_003655 0.51 +0.3 779,821 + TX73_003655 0.51 -0.5 779,829 - TX73_003655 0.52 +0.2 779,829 - TX73_003655 0.52 -0.5 779,829 - TX73_003655 0.52 +0.2 779,830 + TX73_003655 0.53 +1.0 779,843 - TX73_003655 0.55 +0.1 779,939 + TX73_003655 0.75 +0.2 779,943 - TX73_003655 0.76 -0.1 779,945 - TX73_003655 0.77 +0.4 779,955 - TX73_003655 0.79 +0.1 779,990 - TX73_003655 0.86 -0.3 780,000 - TX73_003655 0.88 -0.8 780,008 + +0.1 780,026 - +0.6 780,038 - -0.2 780,093 + TX73_003660 0.19 +0.3 780,093 + TX73_003660 0.19 +0.4 780,093 + TX73_003660 0.19 +0.1 780,107 + TX73_003660 0.23 -0.5 780,120 + TX73_003660 0.27 +0.2 780,139 + TX73_003660 0.33 +0.4 780,172 + TX73_003660 0.43 -0.0 780,172 + TX73_003660 0.43 -0.3 780,180 - TX73_003660 0.45 +0.1 780,180 - TX73_003660 0.45 +0.1 780,199 - TX73_003660 0.51 +0.5 780,238 - TX73_003660 0.63 -0.3 780,294 + TX73_003660 0.81 -0.1 780,310 - TX73_003660 0.85 -0.6 780,330 - -0.2 780,339 + +0.3 780,347 - -0.7 780,376 + -0.1 780,384 - -0.5 780,391 + -0.1 780,432 + +0.2 780,447 - -0.8 780,448 + -0.2 780,505 - TX73_003665 0.23 -0.5 780,507 + TX73_003665 0.24 +0.2 780,512 + TX73_003665 0.26 -0.8 780,520 - TX73_003665 0.30 -0.6 780,520 - TX73_003665 0.30 +0.3 780,533 + TX73_003665 0.36 -0.7 780,564 - TX73_003665 0.50 +1.3 780,590 + TX73_003665 0.62 -0.8 780,598 - TX73_003665 0.66 +0.5 780,601 + TX73_003665 0.67 -1.5 780,609 - TX73_003665 0.71 +0.4 780,614 + TX73_003665 0.73 -0.1 780,654 + -0.8 780,659 + +0.2 780,664 + +0.2 780,667 - -0.2 780,667 - +0.5 780,683 + +1.0 780,707 + +0.0 780,746 + -0.1 780,766 - +1.2 780,780 + +1.2 780,783 - -0.1 780,789 + -0.7 780,791 - -0.7 780,798 - -1.3 780,803 - +0.6 780,805 + +0.4 780,813 - -0.7 780,815 + -0.0 780,815 + -0.5 780,815 + -0.9 780,815 + +0.4 780,815 + -0.1 780,815 + +0.1 780,815 + -0.3 780,815 + -0.3 780,815 + +2.0 780,815 + +0.1 780,815 + +0.2 780,815 + +0.3 780,815 + +0.1 780,815 + -0.4 780,815 + -0.5 780,815 + -1.2 780,815 + +0.1 780,823 - -0.1 780,823 - -0.3 780,823 - -1.3 780,823 - +0.3 780,823 - +0.3 780,835 + TX73_003670 0.11 -2.2 780,850 + TX73_003670 0.14 +0.4 780,900 - TX73_003670 0.24 +0.4 780,945 - TX73_003670 0.33 -1.5 780,945 - TX73_003670 0.33 +0.2 780,950 - TX73_003670 0.34 -0.8 780,994 + TX73_003670 0.42 +0.1 781,038 + TX73_003670 0.51 +0.1 781,038 + TX73_003670 0.51 +0.5 781,046 + TX73_003670 0.52 -0.3 781,056 + TX73_003670 0.54 -1.0 781,056 + TX73_003670 0.54 -0.2 781,064 - TX73_003670 0.56 -0.5 781,064 - TX73_003670 0.56 -0.7 781,069 - TX73_003670 0.57 -0.3 781,069 - TX73_003670 0.57 -0.2 781,147 - TX73_003670 0.72 +0.0 781,147 - TX73_003670 0.72 -0.2 781,161 + TX73_003670 0.75 +0.1 781,169 - TX73_003670 0.76 +0.0 781,180 + TX73_003670 0.79 -0.2 781,185 + TX73_003670 0.80 +0.6 781,185 - TX73_003670 0.80 -0.1 781,235 - TX73_003670 0.89 -1.2 781,249 - +0.3 781,274 + +0.3 781,274 + +0.3 781,274 + +0.5 781,286 - -0.7 781,331 - +0.0 781,401 + +0.4 781,414 - -0.7 781,452 + +0.5 781,459 + +0.2 781,459 + -0.7 781,460 - +0.0 781,467 - +0.2 781,474 + -0.4 781,481 - -1.1 781,518 - TX73_003675 0.12 -0.3 781,520 - TX73_003675 0.12 -0.0 781,525 + TX73_003675 0.13 -0.3 781,525 + TX73_003675 0.13 -0.0 781,533 - TX73_003675 0.15 -0.5 781,547 + TX73_003675 0.18 +0.7 781,548 - TX73_003675 0.18 +0.0 781,560 - TX73_003675 0.20 -0.1 781,562 + TX73_003675 0.21 +0.5 781,570 - TX73_003675 0.22 +0.4 781,602 - TX73_003675 0.29 +0.5 781,618 - TX73_003675 0.32 +0.0 781,623 - TX73_003675 0.33 -0.5 781,626 + TX73_003675 0.34 -0.1 781,641 + TX73_003675 0.37 +0.6 781,659 - TX73_003675 0.40 -0.1 781,666 - TX73_003675 0.42 -0.7 781,666 - TX73_003675 0.42 +0.5 781,666 - TX73_003675 0.42 -0.1 781,670 + TX73_003675 0.43 -0.9 781,696 + TX73_003675 0.48 -1.2 781,696 + TX73_003675 0.48 +0.5 781,696 + TX73_003675 0.48 -0.7 781,707 + TX73_003675 0.50 -0.4 781,737 + TX73_003675 0.56 -1.0 781,739 - TX73_003675 0.57 +0.3 781,745 - TX73_003675 0.58 +0.4 781,753 + TX73_003675 0.60 +0.2 781,753 + TX73_003675 0.60 +0.4 781,883 + TX73_003675 0.86 +1.8 781,883 + TX73_003675 0.86 -0.2 781,886 - TX73_003675 0.87 +1.1 781,901 + -0.5 781,901 + -0.5 781,909 + -0.3 781,909 - -0.1 781,913 + +0.8 781,917 - -0.1 781,935 - -0.4 781,959 - +1.6 781,967 - +0.1 781,967 - -0.8 782,018 - -0.4 782,071 + -0.0 782,075 + +0.2 782,112 - -0.1 782,112 - +1.0 782,124 - +0.1 782,133 - +0.5 782,137 + -0.0 782,144 + -0.3 782,203 + +0.8 782,203 + -0.2 782,218 - +0.4 782,239 - -0.8 782,244 - +0.0 782,246 + +0.9 782,251 + +0.6 782,254 - +0.1 782,255 - +0.5 782,260 + +0.7 782,263 - -0.8 782,265 - +0.2 782,265 - -0.1 782,268 - -0.3
Or see this region's nucleotide sequence