Experiment: starvation expt 4; 14 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002555 and TX73_002560 are separated by 300 nucleotides TX73_002560 and TX73_002565 are separated by 324 nucleotides TX73_002565 and TX73_002570 are separated by 23 nucleotides
TX73_002555: TX73_002555 - DUF3108 domain-containing protein, at 544,995 to 545,867
_002555
TX73_002560: TX73_002560 - 50S ribosomal protein L28, at 546,168 to 546,473
_002560
TX73_002565: TX73_002565 - PAS domain S-box protein, at 546,798 to 550,043
_002565
TX73_002570: TX73_002570 - esterase-like activity of phytase family protein, at 550,067 to 551,215
_002570
Position (kb) 546
547
548
549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 545.802 kb on + strand at 545.802 kb on + strand at 545.810 kb on - strand at 545.810 kb on - strand at 545.825 kb on + strand at 545.844 kb on - strand at 545.854 kb on + strand at 545.875 kb on + strand at 545.875 kb on + strand at 545.880 kb on + strand at 545.886 kb on + strand at 545.912 kb on - strand at 545.918 kb on + strand at 545.951 kb on + strand at 545.951 kb on + strand at 545.959 kb on - strand at 545.982 kb on + strand at 545.990 kb on - strand at 546.007 kb on + strand at 546.015 kb on - strand at 546.017 kb on + strand at 546.048 kb on - strand at 546.064 kb on - strand at 546.064 kb on - strand at 546.064 kb on - strand at 546.440 kb on - strand, within TX73_002560 at 546.472 kb on + strand at 546.542 kb on - strand at 546.546 kb on + strand at 546.556 kb on + strand at 546.563 kb on - strand at 546.565 kb on + strand at 546.565 kb on + strand at 546.573 kb on - strand at 546.590 kb on - strand at 546.628 kb on + strand at 546.631 kb on + strand at 546.637 kb on - strand at 546.701 kb on + strand at 546.713 kb on - strand at 546.713 kb on - strand at 546.714 kb on + strand at 546.732 kb on - strand at 546.734 kb on + strand at 546.736 kb on + strand at 546.744 kb on - strand at 546.744 kb on - strand at 546.744 kb on - strand at 546.744 kb on - strand at 546.772 kb on + strand at 546.787 kb on - strand at 546.819 kb on + strand at 546.834 kb on - strand at 546.837 kb on - strand at 546.840 kb on + strand at 546.868 kb on - strand at 546.920 kb on + strand at 546.933 kb on + strand at 546.938 kb on + strand at 546.953 kb on + strand at 546.976 kb on - strand at 546.976 kb on - strand at 547.019 kb on - strand at 547.023 kb on + strand at 547.025 kb on + strand at 547.025 kb on + strand at 547.044 kb on + strand at 547.047 kb on + strand at 547.047 kb on + strand at 547.132 kb on + strand, within TX73_002565 at 547.161 kb on - strand, within TX73_002565 at 547.176 kb on - strand, within TX73_002565 at 547.186 kb on - strand, within TX73_002565 at 547.186 kb on - strand, within TX73_002565 at 547.272 kb on + strand, within TX73_002565 at 547.319 kb on + strand, within TX73_002565 at 547.369 kb on + strand, within TX73_002565 at 547.369 kb on + strand, within TX73_002565 at 547.369 kb on + strand, within TX73_002565 at 547.370 kb on - strand, within TX73_002565 at 547.377 kb on - strand, within TX73_002565 at 547.407 kb on + strand, within TX73_002565 at 547.423 kb on + strand, within TX73_002565 at 547.438 kb on - strand, within TX73_002565 at 547.442 kb on + strand, within TX73_002565 at 547.446 kb on - strand, within TX73_002565 at 547.446 kb on - strand, within TX73_002565 at 547.518 kb on + strand, within TX73_002565 at 547.536 kb on - strand, within TX73_002565 at 547.599 kb on - strand, within TX73_002565 at 547.599 kb on - strand, within TX73_002565 at 547.616 kb on + strand, within TX73_002565 at 547.624 kb on - strand, within TX73_002565 at 547.669 kb on - strand, within TX73_002565 at 547.671 kb on + strand, within TX73_002565 at 547.671 kb on + strand, within TX73_002565 at 547.681 kb on + strand, within TX73_002565 at 547.681 kb on + strand, within TX73_002565 at 547.684 kb on - strand, within TX73_002565 at 547.724 kb on - strand, within TX73_002565 at 547.735 kb on - strand, within TX73_002565 at 547.735 kb on - strand, within TX73_002565 at 547.776 kb on + strand, within TX73_002565 at 547.786 kb on + strand, within TX73_002565 at 547.789 kb on - strand, within TX73_002565 at 547.794 kb on - strand, within TX73_002565 at 547.844 kb on - strand, within TX73_002565 at 547.951 kb on + strand, within TX73_002565 at 547.951 kb on - strand, within TX73_002565 at 547.951 kb on - strand, within TX73_002565 at 548.015 kb on - strand, within TX73_002565 at 548.034 kb on + strand, within TX73_002565 at 548.037 kb on + strand, within TX73_002565 at 548.039 kb on + strand, within TX73_002565 at 548.098 kb on - strand, within TX73_002565 at 548.105 kb on - strand, within TX73_002565 at 548.136 kb on - strand, within TX73_002565 at 548.138 kb on + strand, within TX73_002565 at 548.146 kb on - strand, within TX73_002565 at 548.156 kb on + strand, within TX73_002565 at 548.164 kb on - strand, within TX73_002565 at 548.164 kb on - strand, within TX73_002565 at 548.164 kb on - strand, within TX73_002565 at 548.299 kb on + strand, within TX73_002565 at 548.349 kb on + strand, within TX73_002565 at 548.352 kb on - strand, within TX73_002565 at 548.356 kb on - strand, within TX73_002565 at 548.407 kb on + strand, within TX73_002565 at 548.461 kb on + strand, within TX73_002565 at 548.471 kb on + strand, within TX73_002565 at 548.479 kb on - strand, within TX73_002565 at 548.479 kb on - strand, within TX73_002565 at 548.483 kb on + strand, within TX73_002565 at 548.484 kb on + strand, within TX73_002565 at 548.515 kb on + strand, within TX73_002565 at 548.534 kb on - strand, within TX73_002565 at 548.551 kb on + strand, within TX73_002565 at 548.566 kb on + strand, within TX73_002565 at 548.583 kb on + strand, within TX73_002565 at 548.597 kb on + strand, within TX73_002565 at 548.597 kb on + strand, within TX73_002565 at 548.597 kb on + strand, within TX73_002565 at 548.597 kb on + strand, within TX73_002565 at 548.597 kb on + strand, within TX73_002565 at 548.652 kb on + strand, within TX73_002565 at 548.652 kb on + strand, within TX73_002565 at 548.653 kb on - strand, within TX73_002565 at 548.707 kb on + strand, within TX73_002565 at 548.715 kb on - strand, within TX73_002565 at 548.733 kb on - strand, within TX73_002565 at 548.742 kb on + strand, within TX73_002565 at 548.803 kb on + strand, within TX73_002565 at 549.000 kb on + strand, within TX73_002565 at 549.048 kb on - strand, within TX73_002565 at 549.067 kb on - strand, within TX73_002565 at 549.078 kb on - strand, within TX73_002565 at 549.093 kb on - strand, within TX73_002565 at 549.128 kb on - strand, within TX73_002565 at 549.156 kb on - strand, within TX73_002565 at 549.192 kb on - strand, within TX73_002565 at 549.220 kb on - strand, within TX73_002565 at 549.232 kb on + strand, within TX73_002565 at 549.248 kb on + strand, within TX73_002565 at 549.256 kb on - strand, within TX73_002565 at 549.259 kb on + strand, within TX73_002565 at 549.349 kb on - strand, within TX73_002565 at 549.390 kb on - strand, within TX73_002565 at 549.410 kb on + strand, within TX73_002565 at 549.426 kb on + strand, within TX73_002565 at 549.426 kb on + strand, within TX73_002565 at 549.434 kb on - strand, within TX73_002565 at 549.454 kb on - strand, within TX73_002565 at 549.462 kb on + strand, within TX73_002565 at 549.480 kb on - strand, within TX73_002565 at 549.493 kb on - strand, within TX73_002565 at 549.516 kb on + strand, within TX73_002565 at 549.521 kb on + strand, within TX73_002565 at 549.524 kb on - strand, within TX73_002565 at 549.588 kb on - strand, within TX73_002565 at 549.593 kb on + strand, within TX73_002565 at 549.602 kb on - strand, within TX73_002565 at 549.608 kb on - strand, within TX73_002565 at 549.635 kb on + strand, within TX73_002565 at 549.635 kb on + strand, within TX73_002565 at 549.645 kb on + strand, within TX73_002565 at 549.647 kb on + strand, within TX73_002565 at 549.668 kb on + strand, within TX73_002565 at 549.692 kb on - strand, within TX73_002565 at 549.730 kb on - strand at 549.737 kb on + strand at 549.752 kb on + strand at 549.768 kb on - strand at 549.808 kb on - strand at 549.945 kb on + strand at 549.947 kb on - strand at 549.983 kb on + strand at 549.999 kb on + strand at 550.021 kb on - strand at 550.050 kb on + strand at 550.106 kb on + strand at 550.265 kb on - strand, within TX73_002570 at 550.287 kb on - strand, within TX73_002570 at 550.296 kb on + strand, within TX73_002570 at 550.296 kb on + strand, within TX73_002570 at 550.325 kb on + strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.354 kb on - strand, within TX73_002570 at 550.359 kb on - strand, within TX73_002570 at 550.383 kb on - strand, within TX73_002570 at 550.389 kb on + strand, within TX73_002570 at 550.458 kb on + strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.466 kb on - strand, within TX73_002570 at 550.552 kb on + strand, within TX73_002570 at 550.552 kb on + strand, within TX73_002570 at 550.560 kb on - strand, within TX73_002570 at 550.576 kb on + strand, within TX73_002570 at 550.648 kb on - strand, within TX73_002570 at 550.690 kb on + strand, within TX73_002570 at 550.714 kb on + strand, within TX73_002570 at 550.737 kb on + strand, within TX73_002570 at 550.757 kb on + strand, within TX73_002570 at 550.780 kb on - strand, within TX73_002570 at 550.780 kb on - strand, within TX73_002570 at 550.780 kb on - strand, within TX73_002570 at 550.793 kb on + strand, within TX73_002570 at 550.798 kb on + strand, within TX73_002570 at 550.823 kb on + strand, within TX73_002570 at 550.892 kb on + strand, within TX73_002570 at 550.902 kb on + strand, within TX73_002570 at 550.940 kb on + strand, within TX73_002570 at 550.948 kb on + strand, within TX73_002570 at 550.953 kb on + strand, within TX73_002570 at 551.002 kb on + strand, within TX73_002570 at 551.002 kb on + strand, within TX73_002570 at 551.008 kb on + strand, within TX73_002570 at 551.023 kb on - strand, within TX73_002570 at 551.025 kb on + strand, within TX73_002570 at 551.033 kb on - strand, within TX73_002570
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 4; 14 days; outgrowth in CAAc remove 545,802 + -0.6 545,802 + -0.6 545,810 - -0.2 545,810 - -0.3 545,825 + +0.5 545,844 - -0.0 545,854 + -0.1 545,875 + -1.6 545,875 + -1.3 545,880 + -0.3 545,886 + +0.1 545,912 - +0.1 545,918 + +0.0 545,951 + +0.7 545,951 + +0.6 545,959 - +0.2 545,982 + -0.7 545,990 - -2.8 546,007 + +0.9 546,015 - -0.5 546,017 + -0.6 546,048 - -0.4 546,064 - -0.0 546,064 - +0.5 546,064 - -0.2 546,440 - TX73_002560 0.89 -1.2 546,472 + -0.1 546,542 - +0.0 546,546 + -0.3 546,556 + +0.1 546,563 - +0.0 546,565 + +0.5 546,565 + +1.2 546,573 - -0.3 546,590 - +0.2 546,628 + -0.0 546,631 + +0.1 546,637 - -0.1 546,701 + -0.4 546,713 - -0.3 546,713 - +0.0 546,714 + +0.2 546,732 - +0.3 546,734 + -0.2 546,736 + -0.4 546,744 - +0.2 546,744 - +1.6 546,744 - +0.0 546,744 - +0.0 546,772 + -0.9 546,787 - -0.2 546,819 + +0.8 546,834 - -0.2 546,837 - +0.5 546,840 + -0.4 546,868 - +0.7 546,920 + +0.4 546,933 + -0.2 546,938 + +0.7 546,953 + -0.2 546,976 - +0.7 546,976 - +0.2 547,019 - +0.5 547,023 + -0.2 547,025 + -0.7 547,025 + +0.5 547,044 + -0.3 547,047 + -0.8 547,047 + +0.0 547,132 + TX73_002565 0.10 -0.3 547,161 - TX73_002565 0.11 +0.1 547,176 - TX73_002565 0.12 +0.2 547,186 - TX73_002565 0.12 -0.5 547,186 - TX73_002565 0.12 +0.7 547,272 + TX73_002565 0.15 +0.5 547,319 + TX73_002565 0.16 +1.2 547,369 + TX73_002565 0.18 -0.1 547,369 + TX73_002565 0.18 +0.3 547,369 + TX73_002565 0.18 -0.3 547,370 - TX73_002565 0.18 -0.9 547,377 - TX73_002565 0.18 +0.2 547,407 + TX73_002565 0.19 +0.3 547,423 + TX73_002565 0.19 +0.4 547,438 - TX73_002565 0.20 +0.8 547,442 + TX73_002565 0.20 -0.0 547,446 - TX73_002565 0.20 -0.6 547,446 - TX73_002565 0.20 -0.2 547,518 + TX73_002565 0.22 +0.5 547,536 - TX73_002565 0.23 -0.6 547,599 - TX73_002565 0.25 -0.2 547,599 - TX73_002565 0.25 +1.0 547,616 + TX73_002565 0.25 +0.2 547,624 - TX73_002565 0.25 +0.2 547,669 - TX73_002565 0.27 +0.4 547,671 + TX73_002565 0.27 +0.2 547,671 + TX73_002565 0.27 +0.1 547,681 + TX73_002565 0.27 +1.2 547,681 + TX73_002565 0.27 -0.9 547,684 - TX73_002565 0.27 -0.3 547,724 - TX73_002565 0.29 +0.2 547,735 - TX73_002565 0.29 -0.1 547,735 - TX73_002565 0.29 -1.0 547,776 + TX73_002565 0.30 +1.6 547,786 + TX73_002565 0.30 -0.8 547,789 - TX73_002565 0.31 +0.3 547,794 - TX73_002565 0.31 -1.2 547,844 - TX73_002565 0.32 -1.0 547,951 + TX73_002565 0.36 -0.4 547,951 - TX73_002565 0.36 +0.3 547,951 - TX73_002565 0.36 +0.1 548,015 - TX73_002565 0.37 +0.7 548,034 + TX73_002565 0.38 -0.0 548,037 + TX73_002565 0.38 +0.5 548,039 + TX73_002565 0.38 +0.3 548,098 - TX73_002565 0.40 +0.3 548,105 - TX73_002565 0.40 +0.3 548,136 - TX73_002565 0.41 +0.1 548,138 + TX73_002565 0.41 -0.3 548,146 - TX73_002565 0.42 +0.4 548,156 + TX73_002565 0.42 -0.0 548,164 - TX73_002565 0.42 +0.2 548,164 - TX73_002565 0.42 +0.3 548,164 - TX73_002565 0.42 +0.5 548,299 + TX73_002565 0.46 +0.7 548,349 + TX73_002565 0.48 +0.1 548,352 - TX73_002565 0.48 +0.8 548,356 - TX73_002565 0.48 -0.1 548,407 + TX73_002565 0.50 +0.4 548,461 + TX73_002565 0.51 +1.2 548,471 + TX73_002565 0.52 +0.6 548,479 - TX73_002565 0.52 +0.4 548,479 - TX73_002565 0.52 +0.6 548,483 + TX73_002565 0.52 -1.0 548,484 + TX73_002565 0.52 +0.1 548,515 + TX73_002565 0.53 +0.2 548,534 - TX73_002565 0.53 -0.1 548,551 + TX73_002565 0.54 +1.0 548,566 + TX73_002565 0.54 -0.1 548,583 + TX73_002565 0.55 +0.5 548,597 + TX73_002565 0.55 +1.4 548,597 + TX73_002565 0.55 +0.8 548,597 + TX73_002565 0.55 +0.8 548,597 + TX73_002565 0.55 +0.2 548,597 + TX73_002565 0.55 -1.9 548,652 + TX73_002565 0.57 +0.0 548,652 + TX73_002565 0.57 +0.6 548,653 - TX73_002565 0.57 +0.4 548,707 + TX73_002565 0.59 +0.4 548,715 - TX73_002565 0.59 +0.9 548,733 - TX73_002565 0.60 +0.2 548,742 + TX73_002565 0.60 +0.3 548,803 + TX73_002565 0.62 -0.3 549,000 + TX73_002565 0.68 +0.2 549,048 - TX73_002565 0.69 +0.2 549,067 - TX73_002565 0.70 -0.2 549,078 - TX73_002565 0.70 +0.7 549,093 - TX73_002565 0.71 -0.3 549,128 - TX73_002565 0.72 +0.8 549,156 - TX73_002565 0.73 +0.1 549,192 - TX73_002565 0.74 -1.0 549,220 - TX73_002565 0.75 +1.0 549,232 + TX73_002565 0.75 +0.2 549,248 + TX73_002565 0.75 +0.4 549,256 - TX73_002565 0.76 +0.2 549,259 + TX73_002565 0.76 +0.5 549,349 - TX73_002565 0.79 +0.4 549,390 - TX73_002565 0.80 -0.7 549,410 + TX73_002565 0.80 +2.6 549,426 + TX73_002565 0.81 -0.2 549,426 + TX73_002565 0.81 +0.1 549,434 - TX73_002565 0.81 +0.0 549,454 - TX73_002565 0.82 -0.4 549,462 + TX73_002565 0.82 +0.1 549,480 - TX73_002565 0.83 -0.9 549,493 - TX73_002565 0.83 -0.0 549,516 + TX73_002565 0.84 +1.1 549,521 + TX73_002565 0.84 +0.6 549,524 - TX73_002565 0.84 -0.4 549,588 - TX73_002565 0.86 -0.4 549,593 + TX73_002565 0.86 -0.5 549,602 - TX73_002565 0.86 -0.4 549,608 - TX73_002565 0.87 +0.4 549,635 + TX73_002565 0.87 -0.3 549,635 + TX73_002565 0.87 -0.9 549,645 + TX73_002565 0.88 -0.1 549,647 + TX73_002565 0.88 +0.2 549,668 + TX73_002565 0.88 +0.2 549,692 - TX73_002565 0.89 +0.4 549,730 - -0.7 549,737 + -0.1 549,752 + +0.3 549,768 - -1.4 549,808 - -0.7 549,945 + -0.7 549,947 - -0.1 549,983 + +0.3 549,999 + -1.1 550,021 - -0.7 550,050 + +0.4 550,106 + -0.8 550,265 - TX73_002570 0.17 +0.3 550,287 - TX73_002570 0.19 -0.3 550,296 + TX73_002570 0.20 -0.4 550,296 + TX73_002570 0.20 -0.2 550,325 + TX73_002570 0.22 -0.3 550,354 - TX73_002570 0.25 +0.5 550,354 - TX73_002570 0.25 +0.5 550,354 - TX73_002570 0.25 -0.2 550,354 - TX73_002570 0.25 -0.2 550,359 - TX73_002570 0.25 -0.5 550,383 - TX73_002570 0.28 -0.2 550,389 + TX73_002570 0.28 +0.1 550,458 + TX73_002570 0.34 +0.7 550,466 - TX73_002570 0.35 +1.0 550,466 - TX73_002570 0.35 -0.3 550,466 - TX73_002570 0.35 +0.6 550,466 - TX73_002570 0.35 +0.6 550,552 + TX73_002570 0.42 -0.5 550,552 + TX73_002570 0.42 +0.2 550,560 - TX73_002570 0.43 +0.3 550,576 + TX73_002570 0.44 +0.8 550,648 - TX73_002570 0.51 +0.4 550,690 + TX73_002570 0.54 -0.4 550,714 + TX73_002570 0.56 +1.1 550,737 + TX73_002570 0.58 -1.7 550,757 + TX73_002570 0.60 +0.1 550,780 - TX73_002570 0.62 +0.2 550,780 - TX73_002570 0.62 +0.7 550,780 - TX73_002570 0.62 +0.1 550,793 + TX73_002570 0.63 +0.4 550,798 + TX73_002570 0.64 +0.2 550,823 + TX73_002570 0.66 +0.3 550,892 + TX73_002570 0.72 -0.2 550,902 + TX73_002570 0.73 +0.5 550,940 + TX73_002570 0.76 +0.4 550,948 + TX73_002570 0.77 +0.2 550,953 + TX73_002570 0.77 -1.3 551,002 + TX73_002570 0.81 -0.2 551,002 + TX73_002570 0.81 -0.5 551,008 + TX73_002570 0.82 -0.1 551,023 - TX73_002570 0.83 +0.8 551,025 + TX73_002570 0.83 +0.2 551,033 - TX73_002570 0.84 -0.8
Or see this region's nucleotide sequence