Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001380

Experiment: starvation expt 4; 14 days; outgrowth in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001375 and TX73_001380 are separated by 52 nucleotidesTX73_001380 and TX73_001385 are separated by 68 nucleotides TX73_001375: TX73_001375 - acyltransferase family protein, at 290,514 to 292,451 _001375 TX73_001380: TX73_001380 - alginate O-acetyltransferase, at 292,504 to 293,604 _001380 TX73_001385: TX73_001385 - MBOAT family protein, at 293,673 to 295,085 _001385 Position (kb) 292 293 294Strain fitness (log2 ratio) -2 -1 0 1at 291.540 kb on + strand, within TX73_001375at 291.559 kb on - strand, within TX73_001375at 291.596 kb on + strand, within TX73_001375at 291.604 kb on - strand, within TX73_001375at 291.611 kb on + strand, within TX73_001375at 291.643 kb on + strand, within TX73_001375at 291.643 kb on + strand, within TX73_001375at 291.643 kb on + strand, within TX73_001375at 291.643 kb on + strand, within TX73_001375at 291.672 kb on + strand, within TX73_001375at 291.672 kb on + strand, within TX73_001375at 291.680 kb on - strand, within TX73_001375at 291.680 kb on - strand, within TX73_001375at 291.729 kb on - strand, within TX73_001375at 291.759 kb on + strand, within TX73_001375at 291.759 kb on + strand, within TX73_001375at 291.817 kb on + strand, within TX73_001375at 291.817 kb on + strand, within TX73_001375at 291.817 kb on + strand, within TX73_001375at 291.817 kb on + strand, within TX73_001375at 291.823 kb on - strand, within TX73_001375at 291.825 kb on - strand, within TX73_001375at 291.825 kb on - strand, within TX73_001375at 291.825 kb on - strand, within TX73_001375at 291.834 kb on + strand, within TX73_001375at 291.834 kb on + strand, within TX73_001375at 291.834 kb on + strand, within TX73_001375at 291.834 kb on + strand, within TX73_001375at 291.834 kb on + strand, within TX73_001375at 291.834 kb on + strand, within TX73_001375at 291.834 kb on + strand, within TX73_001375at 291.839 kb on + strand, within TX73_001375at 291.842 kb on - strand, within TX73_001375at 291.842 kb on - strand, within TX73_001375at 291.850 kb on - strand, within TX73_001375at 291.869 kb on + strand, within TX73_001375at 291.869 kb on + strand, within TX73_001375at 291.869 kb on + strand, within TX73_001375at 291.898 kb on + strand, within TX73_001375at 291.923 kb on + strand, within TX73_001375at 291.959 kb on + strand, within TX73_001375at 291.959 kb on + strand, within TX73_001375at 291.982 kb on + strand, within TX73_001375at 291.990 kb on - strand, within TX73_001375at 292.011 kb on + strand, within TX73_001375at 292.055 kb on + strand, within TX73_001375at 292.055 kb on + strand, within TX73_001375at 292.055 kb on + strand, within TX73_001375at 292.060 kb on + strand, within TX73_001375at 292.063 kb on - strand, within TX73_001375at 292.063 kb on - strand, within TX73_001375at 292.068 kb on - strand, within TX73_001375at 292.103 kb on + strand, within TX73_001375at 292.129 kb on + strand, within TX73_001375at 292.155 kb on + strand, within TX73_001375at 292.169 kb on + strand, within TX73_001375at 292.177 kb on - strand, within TX73_001375at 292.182 kb on + strand, within TX73_001375at 292.182 kb on + strand, within TX73_001375at 292.182 kb on + strand, within TX73_001375at 292.235 kb on - strand, within TX73_001375at 292.237 kb on - strand, within TX73_001375at 292.281 kb on + strandat 292.281 kb on + strandat 292.281 kb on + strandat 292.281 kb on + strandat 292.289 kb on - strandat 292.289 kb on - strandat 292.289 kb on - strandat 292.314 kb on + strandat 292.326 kb on + strandat 292.334 kb on - strandat 292.355 kb on - strandat 292.357 kb on - strandat 292.396 kb on - strandat 292.396 kb on - strandat 292.459 kb on - strandat 292.485 kb on + strandat 292.485 kb on + strandat 292.493 kb on - strandat 292.493 kb on - strandat 292.493 kb on - strandat 292.493 kb on - strandat 292.493 kb on - strandat 292.493 kb on - strandat 292.500 kb on + strandat 292.503 kb on - strandat 292.503 kb on - strandat 292.503 kb on - strandat 292.508 kb on - strandat 292.508 kb on - strandat 292.510 kb on - strandat 292.510 kb on - strandat 292.555 kb on + strandat 292.581 kb on + strandat 292.596 kb on + strandat 292.602 kb on - strandat 292.616 kb on + strand, within TX73_001380at 292.616 kb on + strand, within TX73_001380at 292.624 kb on - strand, within TX73_001380at 292.624 kb on - strand, within TX73_001380at 292.624 kb on - strand, within TX73_001380at 292.624 kb on - strand, within TX73_001380at 292.630 kb on + strand, within TX73_001380at 292.638 kb on - strand, within TX73_001380at 292.643 kb on - strand, within TX73_001380at 292.646 kb on - strand, within TX73_001380at 292.662 kb on + strand, within TX73_001380at 292.667 kb on + strand, within TX73_001380at 292.702 kb on - strand, within TX73_001380at 292.709 kb on + strand, within TX73_001380at 292.716 kb on - strand, within TX73_001380at 292.716 kb on - strand, within TX73_001380at 292.740 kb on - strand, within TX73_001380at 292.747 kb on + strand, within TX73_001380at 292.757 kb on + strand, within TX73_001380at 292.765 kb on - strand, within TX73_001380at 292.770 kb on - strand, within TX73_001380at 292.797 kb on - strand, within TX73_001380at 292.799 kb on + strand, within TX73_001380at 292.807 kb on - strand, within TX73_001380at 292.871 kb on - strand, within TX73_001380at 292.876 kb on + strand, within TX73_001380at 292.902 kb on + strand, within TX73_001380at 292.936 kb on + strand, within TX73_001380at 292.945 kb on - strand, within TX73_001380at 293.001 kb on + strand, within TX73_001380at 293.087 kb on + strand, within TX73_001380at 293.105 kb on - strand, within TX73_001380at 293.110 kb on - strand, within TX73_001380at 293.125 kb on - strand, within TX73_001380at 293.126 kb on - strand, within TX73_001380at 293.135 kb on + strand, within TX73_001380at 293.138 kb on - strand, within TX73_001380at 293.148 kb on - strand, within TX73_001380at 293.148 kb on - strand, within TX73_001380at 293.186 kb on + strand, within TX73_001380at 293.194 kb on - strand, within TX73_001380at 293.194 kb on - strand, within TX73_001380at 293.196 kb on + strand, within TX73_001380at 293.254 kb on - strand, within TX73_001380at 293.281 kb on + strand, within TX73_001380at 293.282 kb on + strand, within TX73_001380at 293.282 kb on + strand, within TX73_001380at 293.282 kb on + strand, within TX73_001380at 293.290 kb on - strand, within TX73_001380at 293.426 kb on + strand, within TX73_001380at 293.426 kb on - strand, within TX73_001380at 293.478 kb on + strand, within TX73_001380at 293.530 kb on - strandat 293.541 kb on + strandat 293.541 kb on + strandat 293.541 kb on + strandat 293.561 kb on + strandat 293.569 kb on - strandat 293.591 kb on + strandat 293.596 kb on + strandat 293.599 kb on - strandat 293.739 kb on - strandat 293.782 kb on + strandat 293.785 kb on - strandat 293.813 kb on + strandat 293.822 kb on + strand, within TX73_001385at 293.824 kb on + strand, within TX73_001385at 293.830 kb on + strand, within TX73_001385at 293.832 kb on - strand, within TX73_001385at 293.835 kb on + strand, within TX73_001385at 293.835 kb on + strand, within TX73_001385at 293.843 kb on - strand, within TX73_001385at 293.848 kb on - strand, within TX73_001385at 293.848 kb on - strand, within TX73_001385at 293.858 kb on - strand, within TX73_001385at 293.860 kb on + strand, within TX73_001385at 293.860 kb on + strand, within TX73_001385at 293.863 kb on - strand, within TX73_001385at 293.868 kb on - strand, within TX73_001385at 293.868 kb on - strand, within TX73_001385at 293.868 kb on - strand, within TX73_001385at 293.878 kb on + strand, within TX73_001385at 293.881 kb on + strand, within TX73_001385at 293.904 kb on + strand, within TX73_001385at 293.950 kb on - strand, within TX73_001385at 293.971 kb on - strand, within TX73_001385at 293.978 kb on + strand, within TX73_001385at 294.001 kb on - strand, within TX73_001385at 294.075 kb on + strand, within TX73_001385at 294.125 kb on - strand, within TX73_001385at 294.131 kb on + strand, within TX73_001385at 294.203 kb on - strand, within TX73_001385at 294.221 kb on - strand, within TX73_001385at 294.223 kb on - strand, within TX73_001385at 294.263 kb on + strand, within TX73_001385at 294.343 kb on - strand, within TX73_001385at 294.371 kb on - strand, within TX73_001385at 294.379 kb on - strand, within TX73_001385at 294.385 kb on + strand, within TX73_001385at 294.385 kb on + strand, within TX73_001385at 294.393 kb on - strand, within TX73_001385at 294.411 kb on - strand, within TX73_001385at 294.417 kb on + strand, within TX73_001385at 294.440 kb on + strand, within TX73_001385at 294.461 kb on + strand, within TX73_001385at 294.477 kb on - strand, within TX73_001385at 294.530 kb on + strand, within TX73_001385at 294.530 kb on + strand, within TX73_001385at 294.530 kb on + strand, within TX73_001385at 294.545 kb on - strand, within TX73_001385at 294.577 kb on - strand, within TX73_001385

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation expt 4; 14 days; outgrowth in CAAc
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291,540 + TX73_001375 0.53 +0.4
291,559 - TX73_001375 0.54 -0.7
291,596 + TX73_001375 0.56 +0.1
291,604 - TX73_001375 0.56 +1.3
291,611 + TX73_001375 0.57 +0.6
291,643 + TX73_001375 0.58 -0.7
291,643 + TX73_001375 0.58 -0.7
291,643 + TX73_001375 0.58 -0.6
291,643 + TX73_001375 0.58 -1.3
291,672 + TX73_001375 0.60 -0.1
291,672 + TX73_001375 0.60 -0.1
291,680 - TX73_001375 0.60 +0.1
291,680 - TX73_001375 0.60 +0.9
291,729 - TX73_001375 0.63 -0.1
291,759 + TX73_001375 0.64 -0.4
291,759 + TX73_001375 0.64 -0.9
291,817 + TX73_001375 0.67 -0.2
291,817 + TX73_001375 0.67 -0.6
291,817 + TX73_001375 0.67 -1.1
291,817 + TX73_001375 0.67 -0.5
291,823 - TX73_001375 0.68 -0.3
291,825 - TX73_001375 0.68 +1.3
291,825 - TX73_001375 0.68 -0.4
291,825 - TX73_001375 0.68 -1.0
291,834 + TX73_001375 0.68 -0.3
291,834 + TX73_001375 0.68 -0.3
291,834 + TX73_001375 0.68 +0.4
291,834 + TX73_001375 0.68 +0.7
291,834 + TX73_001375 0.68 +0.4
291,834 + TX73_001375 0.68 +0.2
291,834 + TX73_001375 0.68 +0.5
291,839 + TX73_001375 0.68 -0.2
291,842 - TX73_001375 0.69 -0.3
291,842 - TX73_001375 0.69 +1.0
291,850 - TX73_001375 0.69 +0.0
291,869 + TX73_001375 0.70 -0.1
291,869 + TX73_001375 0.70 -0.1
291,869 + TX73_001375 0.70 +0.0
291,898 + TX73_001375 0.71 -0.1
291,923 + TX73_001375 0.73 -0.0
291,959 + TX73_001375 0.75 -0.5
291,959 + TX73_001375 0.75 -0.1
291,982 + TX73_001375 0.76 -0.2
291,990 - TX73_001375 0.76 +0.1
292,011 + TX73_001375 0.77 +1.1
292,055 + TX73_001375 0.80 +0.4
292,055 + TX73_001375 0.80 +0.5
292,055 + TX73_001375 0.80 -0.9
292,060 + TX73_001375 0.80 -0.6
292,063 - TX73_001375 0.80 +0.2
292,063 - TX73_001375 0.80 -0.2
292,068 - TX73_001375 0.80 +0.5
292,103 + TX73_001375 0.82 -0.2
292,129 + TX73_001375 0.83 -0.1
292,155 + TX73_001375 0.85 +1.0
292,169 + TX73_001375 0.85 -0.3
292,177 - TX73_001375 0.86 +0.4
292,182 + TX73_001375 0.86 +0.0
292,182 + TX73_001375 0.86 +0.4
292,182 + TX73_001375 0.86 -1.0
292,235 - TX73_001375 0.89 -0.6
292,237 - TX73_001375 0.89 +0.8
292,281 + -1.3
292,281 + -0.6
292,281 + +0.7
292,281 + -0.8
292,289 - +0.1
292,289 - +0.9
292,289 - -0.5
292,314 + -0.8
292,326 + +0.5
292,334 - +0.2
292,355 - -0.1
292,357 - -0.7
292,396 - +0.4
292,396 - +0.4
292,459 - -0.2
292,485 + +0.7
292,485 + +0.1
292,493 - +0.3
292,493 - +0.1
292,493 - -0.3
292,493 - -0.2
292,493 - -0.7
292,493 - -0.2
292,500 + +0.2
292,503 - -0.1
292,503 - -1.1
292,503 - +0.1
292,508 - +0.8
292,508 - +0.2
292,510 - -0.9
292,510 - +0.6
292,555 + +0.5
292,581 + -0.3
292,596 + -0.6
292,602 - -2.1
292,616 + TX73_001380 0.10 +0.5
292,616 + TX73_001380 0.10 +0.4
292,624 - TX73_001380 0.11 -0.0
292,624 - TX73_001380 0.11 +0.7
292,624 - TX73_001380 0.11 +0.0
292,624 - TX73_001380 0.11 -0.3
292,630 + TX73_001380 0.11 +0.6
292,638 - TX73_001380 0.12 +0.1
292,643 - TX73_001380 0.13 -0.7
292,646 - TX73_001380 0.13 -0.3
292,662 + TX73_001380 0.14 +0.4
292,667 + TX73_001380 0.15 -0.2
292,702 - TX73_001380 0.18 +0.8
292,709 + TX73_001380 0.19 +0.6
292,716 - TX73_001380 0.19 -1.8
292,716 - TX73_001380 0.19 -0.2
292,740 - TX73_001380 0.21 -0.2
292,747 + TX73_001380 0.22 +0.5
292,757 + TX73_001380 0.23 -0.1
292,765 - TX73_001380 0.24 -0.8
292,770 - TX73_001380 0.24 +0.3
292,797 - TX73_001380 0.27 +0.5
292,799 + TX73_001380 0.27 +0.7
292,807 - TX73_001380 0.28 -0.0
292,871 - TX73_001380 0.33 -0.4
292,876 + TX73_001380 0.34 -0.3
292,902 + TX73_001380 0.36 -0.4
292,936 + TX73_001380 0.39 +0.3
292,945 - TX73_001380 0.40 -0.3
293,001 + TX73_001380 0.45 -0.7
293,087 + TX73_001380 0.53 -0.6
293,105 - TX73_001380 0.55 -0.3
293,110 - TX73_001380 0.55 -0.2
293,125 - TX73_001380 0.56 +0.2
293,126 - TX73_001380 0.56 +1.5
293,135 + TX73_001380 0.57 +0.1
293,138 - TX73_001380 0.58 +0.7
293,148 - TX73_001380 0.58 +0.3
293,148 - TX73_001380 0.58 +0.7
293,186 + TX73_001380 0.62 -1.7
293,194 - TX73_001380 0.63 +0.6
293,194 - TX73_001380 0.63 -0.2
293,196 + TX73_001380 0.63 -0.4
293,254 - TX73_001380 0.68 -0.2
293,281 + TX73_001380 0.71 -0.2
293,282 + TX73_001380 0.71 +0.1
293,282 + TX73_001380 0.71 -0.1
293,282 + TX73_001380 0.71 +0.2
293,290 - TX73_001380 0.71 -0.1
293,426 + TX73_001380 0.84 -0.1
293,426 - TX73_001380 0.84 -0.4
293,478 + TX73_001380 0.88 +0.3
293,530 - -0.2
293,541 + +0.3
293,541 + +0.4
293,541 + -0.3
293,561 + +0.1
293,569 - +0.0
293,591 + -0.3
293,596 + +0.1
293,599 - +0.4
293,739 - +0.7
293,782 + +0.3
293,785 - +0.2
293,813 + -1.5
293,822 + TX73_001385 0.11 +0.1
293,824 + TX73_001385 0.11 +0.4
293,830 + TX73_001385 0.11 +1.1
293,832 - TX73_001385 0.11 -0.3
293,835 + TX73_001385 0.11 -0.2
293,835 + TX73_001385 0.11 +0.8
293,843 - TX73_001385 0.12 -0.6
293,848 - TX73_001385 0.12 +0.0
293,848 - TX73_001385 0.12 +0.1
293,858 - TX73_001385 0.13 +0.3
293,860 + TX73_001385 0.13 +1.0
293,860 + TX73_001385 0.13 +0.1
293,863 - TX73_001385 0.13 +0.4
293,868 - TX73_001385 0.14 +0.2
293,868 - TX73_001385 0.14 +1.0
293,868 - TX73_001385 0.14 -0.5
293,878 + TX73_001385 0.15 -0.1
293,881 + TX73_001385 0.15 -0.6
293,904 + TX73_001385 0.16 -0.5
293,950 - TX73_001385 0.20 -0.4
293,971 - TX73_001385 0.21 -0.6
293,978 + TX73_001385 0.22 +0.1
294,001 - TX73_001385 0.23 +1.1
294,075 + TX73_001385 0.28 +0.8
294,125 - TX73_001385 0.32 +1.3
294,131 + TX73_001385 0.32 -0.8
294,203 - TX73_001385 0.38 -0.2
294,221 - TX73_001385 0.39 +0.5
294,223 - TX73_001385 0.39 +0.5
294,263 + TX73_001385 0.42 -0.3
294,343 - TX73_001385 0.47 +0.3
294,371 - TX73_001385 0.49 +0.3
294,379 - TX73_001385 0.50 -1.1
294,385 + TX73_001385 0.50 +1.0
294,385 + TX73_001385 0.50 +0.5
294,393 - TX73_001385 0.51 -0.0
294,411 - TX73_001385 0.52 -0.3
294,417 + TX73_001385 0.53 -0.1
294,440 + TX73_001385 0.54 +1.2
294,461 + TX73_001385 0.56 -0.5
294,477 - TX73_001385 0.57 +0.3
294,530 + TX73_001385 0.61 +0.1
294,530 + TX73_001385 0.61 -0.1
294,530 + TX73_001385 0.61 +0.3
294,545 - TX73_001385 0.62 +0.2
294,577 - TX73_001385 0.64 +0.5

Or see this region's nucleotide sequence