Experiment: starvation expt 4; 14 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000010 and TX73_000015 are separated by 243 nucleotides TX73_000015 and TX73_000020 are separated by 216 nucleotides
TX73_000010: TX73_000010 - DNA polymerase III subunit beta, at 2,332 to 3,450
_000010
TX73_000015: TX73_000015 - DNA replication/repair protein RecF, at 3,694 to 4,833
_000015
TX73_000020: TX73_000020 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 5,050 to 7,491
_000020
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3.445 kb on + strand at 3.517 kb on + strand at 3.539 kb on - strand at 3.539 kb on - strand at 3.544 kb on - strand at 3.690 kb on + strand at 3.754 kb on + strand at 3.781 kb on + strand at 3.784 kb on - strand at 3.800 kb on + strand at 3.838 kb on - strand, within TX73_000015 at 3.903 kb on - strand, within TX73_000015 at 3.949 kb on - strand, within TX73_000015 at 3.953 kb on - strand, within TX73_000015 at 3.986 kb on + strand, within TX73_000015 at 3.989 kb on + strand, within TX73_000015 at 3.997 kb on - strand, within TX73_000015 at 4.002 kb on - strand, within TX73_000015 at 4.010 kb on - strand, within TX73_000015 at 4.010 kb on - strand, within TX73_000015 at 4.062 kb on + strand, within TX73_000015 at 4.113 kb on - strand, within TX73_000015 at 4.134 kb on + strand, within TX73_000015 at 4.244 kb on + strand, within TX73_000015 at 4.248 kb on + strand, within TX73_000015 at 4.250 kb on + strand, within TX73_000015 at 4.252 kb on - strand, within TX73_000015 at 4.304 kb on + strand, within TX73_000015 at 4.359 kb on - strand, within TX73_000015 at 4.359 kb on - strand, within TX73_000015 at 4.417 kb on - strand, within TX73_000015 at 4.429 kb on + strand, within TX73_000015 at 4.448 kb on - strand, within TX73_000015 at 4.453 kb on - strand, within TX73_000015 at 4.453 kb on - strand, within TX73_000015 at 4.502 kb on + strand, within TX73_000015 at 4.603 kb on - strand, within TX73_000015 at 4.619 kb on - strand, within TX73_000015 at 4.734 kb on + strand at 4.734 kb on + strand at 4.742 kb on - strand at 4.742 kb on - strand at 4.742 kb on - strand at 4.835 kb on + strand at 4.859 kb on + strand at 4.868 kb on - strand at 4.878 kb on - strand at 4.896 kb on + strand at 4.984 kb on - strand at 4.985 kb on + strand at 4.993 kb on - strand at 4.993 kb on - strand at 4.993 kb on - strand at 5.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 4; 14 days; outgrowth in CAAc remove 3,445 + -0.1 3,517 + -0.5 3,539 - -2.9 3,539 - +0.3 3,544 - -1.0 3,690 + -1.3 3,754 + -1.4 3,781 + -0.8 3,784 - +0.4 3,800 + +0.9 3,838 - TX73_000015 0.13 -0.1 3,903 - TX73_000015 0.18 +1.9 3,949 - TX73_000015 0.22 -1.1 3,953 - TX73_000015 0.23 +0.4 3,986 + TX73_000015 0.26 +0.4 3,989 + TX73_000015 0.26 -0.1 3,997 - TX73_000015 0.27 -0.1 4,002 - TX73_000015 0.27 -0.6 4,010 - TX73_000015 0.28 -0.4 4,010 - TX73_000015 0.28 +0.9 4,062 + TX73_000015 0.32 -1.4 4,113 - TX73_000015 0.37 -1.1 4,134 + TX73_000015 0.39 -0.6 4,244 + TX73_000015 0.48 -0.4 4,248 + TX73_000015 0.49 -0.6 4,250 + TX73_000015 0.49 -0.1 4,252 - TX73_000015 0.49 +0.9 4,304 + TX73_000015 0.54 -0.1 4,359 - TX73_000015 0.58 -1.4 4,359 - TX73_000015 0.58 -1.1 4,417 - TX73_000015 0.63 -1.1 4,429 + TX73_000015 0.64 +0.1 4,448 - TX73_000015 0.66 -1.6 4,453 - TX73_000015 0.67 -1.1 4,453 - TX73_000015 0.67 -0.6 4,502 + TX73_000015 0.71 -1.4 4,603 - TX73_000015 0.80 +0.9 4,619 - TX73_000015 0.81 -2.2 4,734 + -0.1 4,734 + -1.9 4,742 - -1.1 4,742 - -1.1 4,742 - -1.6 4,835 + -0.0 4,859 + -0.2 4,868 - +0.1 4,878 - -0.5 4,896 + -0.5 4,984 - -1.4 4,985 + -1.2 4,993 - +0.9 4,993 - -0.6 4,993 - +0.8 5,035 + -0.1
Or see this region's nucleotide sequence