Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011420

Experiment: starvation expt 3; 14 days; outgrowth in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation expt 3; 14 days; outgrowth in CAAc
2,493,732	-		TX73_011415	0.48	-0.3
2,493,783	-		TX73_011415	0.51	+0.5
2,493,783	-		TX73_011415	0.51	+0.7
2,493,790	+		TX73_011415	0.52	+0.0
2,493,791	+		TX73_011415	0.52	-0.4
2,493,798	+		TX73_011415	0.52	+0.5
2,493,798	-		TX73_011415	0.52	+1.0
2,493,798	-		TX73_011415	0.52	-0.4
2,493,799	-		TX73_011415	0.52	-0.7
2,493,816	-		TX73_011415	0.53	+0.2
2,493,818	-		TX73_011415	0.53	+0.2
2,493,861	+		TX73_011415	0.55	-0.1
2,493,920	+		TX73_011415	0.59	-0.3
2,493,940	-		TX73_011415	0.60	-0.7
2,493,956	-		TX73_011415	0.60	-0.4
2,493,994	+		TX73_011415	0.63	-0.2
2,493,994	+		TX73_011415	0.63	-0.4
2,494,002	-		TX73_011415	0.63	+0.3
2,494,002	-		TX73_011415	0.63	-0.6
2,494,032	-		TX73_011415	0.65	-0.3
2,494,037	+		TX73_011415	0.65	+0.2
2,494,042	+		TX73_011415	0.65	+0.3
2,494,045	-		TX73_011415	0.65	+0.1
2,494,050	-		TX73_011415	0.66	+0.5
2,494,057	+		TX73_011415	0.66	-0.2
2,494,065	-		TX73_011415	0.66	-0.1
2,494,069	+		TX73_011415	0.67	+0.2
2,494,147	+		TX73_011415	0.71	-0.6
2,494,154	-		TX73_011415	0.71	+1.1
2,494,159	+		TX73_011415	0.71	-0.6
2,494,167	-		TX73_011415	0.72	-0.2
2,494,214	+		TX73_011415	0.74	-0.4
2,494,235	+		TX73_011415	0.75	+0.3
2,494,243	-		TX73_011415	0.76	+0.6
2,494,243	-		TX73_011415	0.76	+0.8
2,494,243	-		TX73_011415	0.76	-0.6
2,494,259	-		TX73_011415	0.77	+0.0
2,494,279	+		TX73_011415	0.78	+0.7
2,494,325	+		TX73_011415	0.80	+0.0
2,494,325	+		TX73_011415	0.80	+0.3
2,494,325	+		TX73_011415	0.80	-0.5
2,494,325	+		TX73_011415	0.80	-0.5
2,494,333	-		TX73_011415	0.81	+0.2
2,494,333	-		TX73_011415	0.81	+0.5
2,494,376	-		TX73_011415	0.83	-0.5
2,494,394	+		TX73_011415	0.84	-0.3
2,494,394	+		TX73_011415	0.84	+0.7
2,494,394	+		TX73_011415	0.84	-1.1
2,494,394	+		TX73_011415	0.84	+0.5
2,494,394	+		TX73_011415	0.84	+0.1
2,494,402	+		TX73_011415	0.84	+0.6
2,494,402	-		TX73_011415	0.84	+0.2
2,494,402	-		TX73_011415	0.84	+0.0
2,494,417	+		TX73_011415	0.85	-0.8
2,494,425	-		TX73_011415	0.86	+0.7
2,494,425	-		TX73_011415	0.86	+0.3
2,494,425	-		TX73_011415	0.86	+0.3
2,494,425	-		TX73_011415	0.86	-0.5
2,494,428	+		TX73_011415	0.86	+0.7
2,494,429	+		TX73_011415	0.86	+0.0
2,494,435	-		TX73_011415	0.86	-0.4
2,494,447	-		TX73_011415	0.87	+0.1
2,494,459	+		TX73_011415	0.88	-0.8
2,494,473	+		TX73_011415	0.88	+0.4
2,494,473	+		TX73_011415	0.88	+0.7
2,494,481	+		TX73_011415	0.89	-0.4
2,494,489	-		TX73_011415	0.89	+0.2
2,494,489	-		TX73_011415	0.89	-0.1
2,494,537	-				+0.5
2,494,539	+				+0.4
2,494,547	-				-0.4
2,494,547	-				+0.3
2,494,547	-				-0.8
2,494,552	-				-0.3
2,494,559	-				+0.3
2,494,561	-				+0.4
2,494,589	+				-0.0
2,494,606	+				-0.6
2,494,618	+				-0.7
2,494,618	+				+0.9
2,494,626	-				+0.9
2,494,626	-				-0.3
2,494,628	+				+0.1
2,494,629	+				-0.4
2,494,631	-				+0.2
2,494,635	-				+1.8
2,494,637	-				-0.4
2,494,642	+				-0.6
2,494,658	-				+0.1
2,494,667	-				+0.0
2,494,689	-				+1.2
2,494,689	-				+0.1
2,494,689	-				+1.4
2,494,696	+				+0.0
2,494,717	-				+0.7
2,494,718	-				+0.4
2,494,723	-				-0.0
2,494,723	-				-0.4
2,494,725	+				-0.8
2,494,725	+				+0.1
2,494,761	+				+0.5
2,494,769	-				+0.2
2,494,773	+				+0.1
2,494,799	-		TX73_011420	0.10	+0.3
2,494,817	+		TX73_011420	0.12	-0.6
2,494,826	+		TX73_011420	0.12	-0.7
2,494,834	-		TX73_011420	0.13	+0.0
2,494,834	-		TX73_011420	0.13	-0.1
2,494,862	+		TX73_011420	0.15	+0.9
2,494,870	-		TX73_011420	0.16	-0.4
2,494,870	-		TX73_011420	0.16	+0.9
2,494,870	-		TX73_011420	0.16	+0.1
2,494,870	-		TX73_011420	0.16	+0.2
2,494,891	-		TX73_011420	0.18	-0.3
2,494,891	-		TX73_011420	0.18	+0.2
2,494,910	+		TX73_011420	0.19	+0.2
2,494,918	-		TX73_011420	0.20	+0.2
2,494,934	+		TX73_011420	0.22	-0.7
2,494,942	-		TX73_011420	0.22	-0.3
2,494,944	-		TX73_011420	0.22	+0.3
2,494,949	-		TX73_011420	0.23	-0.2
2,494,980	+		TX73_011420	0.25	-0.4
2,494,992	+		TX73_011420	0.26	-0.2
2,494,997	+		TX73_011420	0.27	-0.5
2,495,022	+		TX73_011420	0.29	+0.5
2,495,054	-		TX73_011420	0.32	+0.2
2,495,067	+		TX73_011420	0.33	+0.1
2,495,087	-		TX73_011420	0.34	-0.1
2,495,092	+		TX73_011420	0.35	-1.2
2,495,114	+		TX73_011420	0.37	-0.6
2,495,133	-		TX73_011420	0.38	+0.1
2,495,169	+		TX73_011420	0.41	-0.2
2,495,177	-		TX73_011420	0.42	+0.2
2,495,182	+		TX73_011420	0.42	-0.8
2,495,214	-		TX73_011420	0.45	-0.2
2,495,271	+		TX73_011420	0.50	+0.6
2,495,279	-		TX73_011420	0.51	+0.6
2,495,298	+		TX73_011420	0.52	+0.4
2,495,300	-		TX73_011420	0.52	+0.6
2,495,306	-		TX73_011420	0.53	+0.2
2,495,308	+		TX73_011420	0.53	-0.6
2,495,308	+		TX73_011420	0.53	-0.4
2,495,316	-		TX73_011420	0.54	+0.1
2,495,316	-		TX73_011420	0.54	-0.1
2,495,316	-		TX73_011420	0.54	-0.4
2,495,331	-		TX73_011420	0.55	-0.3
2,495,331	-		TX73_011420	0.55	+0.4
2,495,331	-		TX73_011420	0.55	-0.4
2,495,331	-		TX73_011420	0.55	+0.0
2,495,352	+		TX73_011420	0.57	-0.0
2,495,352	-		TX73_011420	0.57	-0.8
2,495,357	+		TX73_011420	0.57	-1.1
2,495,357	+		TX73_011420	0.57	+0.2
2,495,360	-		TX73_011420	0.57	+0.2
2,495,360	-		TX73_011420	0.57	-0.1
2,495,365	-		TX73_011420	0.58	-0.9
2,495,365	-		TX73_011420	0.58	+1.0
2,495,365	-		TX73_011420	0.58	+0.1
2,495,427	-		TX73_011420	0.63	+0.2
2,495,436	+		TX73_011420	0.64	-0.1
2,495,436	+		TX73_011420	0.64	-0.3
2,495,439	-		TX73_011420	0.64	-0.2
2,495,484	+		TX73_011420	0.68	-0.5
2,495,496	+		TX73_011420	0.69	-0.1
2,495,503	+		TX73_011420	0.70	+0.1
2,495,508	+		TX73_011420	0.70	-1.0
2,495,508	+		TX73_011420	0.70	-0.9
2,495,508	+		TX73_011420	0.70	-0.3
2,495,513	+		TX73_011420	0.70	-0.0
2,495,516	-		TX73_011420	0.71	-0.1
2,495,518	+		TX73_011420	0.71	-0.1
2,495,518	+		TX73_011420	0.71	+0.4
2,495,518	-		TX73_011420	0.71	+0.1
2,495,520	+		TX73_011420	0.71	-0.4
2,495,520	+		TX73_011420	0.71	+0.1
2,495,520	+		TX73_011420	0.71	-0.3
2,495,520	+		TX73_011420	0.71	-0.2
2,495,520	+		TX73_011420	0.71	+0.1
2,495,520	+		TX73_011420	0.71	+0.2
2,495,526	-		TX73_011420	0.71	+0.7
2,495,526	-		TX73_011420	0.71	-0.5
2,495,527	+		TX73_011420	0.72	+0.4
2,495,528	-		TX73_011420	0.72	-0.1
2,495,528	-		TX73_011420	0.72	+0.7
2,495,599	+		TX73_011420	0.78	+0.6
2,495,605	-		TX73_011420	0.78	+0.4
2,495,614	-		TX73_011420	0.79	-0.4
2,495,657	-		TX73_011420	0.83	-0.3
2,495,668	+		TX73_011420	0.83	+0.1
2,495,673	+		TX73_011420	0.84	-0.1
2,495,707	-		TX73_011420	0.87	+0.2
2,495,800	-				-0.0
2,495,802	+				-0.1
2,495,802	+				+0.1
2,495,852	-				-0.3
2,495,861	-				+0.7
2,495,861	-				-0.4
2,495,923	-				+0.4
2,495,947	-				-1.1
2,496,058	+				+0.7
2,496,157	-				-0.3
2,496,160	+				+0.1
2,496,162	-				+0.3
2,496,168	-				-0.6
2,496,307	-		TX73_011425	0.12	+0.2
2,496,325	+		TX73_011425	0.12	+0.8
2,496,379	-		TX73_011425	0.14	-2.5
2,496,414	+		TX73_011425	0.15	+0.3
2,496,414	+		TX73_011425	0.15	-0.1
2,496,439	+		TX73_011425	0.16	+0.0
2,496,447	-		TX73_011425	0.16	-0.3
2,496,470	+		TX73_011425	0.17	-0.4
2,496,480	+		TX73_011425	0.17	+1.1
2,496,480	+		TX73_011425	0.17	+0.1
2,496,488	-		TX73_011425	0.17	+0.0
2,496,488	-		TX73_011425	0.17	-0.9
2,496,488	-		TX73_011425	0.17	+0.2
2,496,488	-		TX73_011425	0.17	+0.3
2,496,505	+		TX73_011425	0.18	-0.6
2,496,513	-		TX73_011425	0.18	-0.7
2,496,514	-		TX73_011425	0.18	+0.8
2,496,518	-		TX73_011425	0.18	+0.9
2,496,526	+		TX73_011425	0.18	-0.8
2,496,534	-		TX73_011425	0.18	+0.2
2,496,538	+		TX73_011425	0.19	+0.8
2,496,538	+		TX73_011425	0.19	-1.1
2,496,538	+		TX73_011425	0.19	-0.1
2,496,538	+		TX73_011425	0.19	-0.8
2,496,538	+		TX73_011425	0.19	+0.7
2,496,545	-		TX73_011425	0.19	-0.8
2,496,545	-		TX73_011425	0.19	+0.1
2,496,546	-		TX73_011425	0.19	+0.1
2,496,556	-		TX73_011425	0.19	-0.4
2,496,568	-		TX73_011425	0.20	-0.0
2,496,627	-		TX73_011425	0.21	+0.5
2,496,627	-		TX73_011425	0.21	-0.8
2,496,658	+		TX73_011425	0.22	-0.4
2,496,659	-		TX73_011425	0.22	-0.2
2,496,659	-		TX73_011425	0.22	+0.1
2,496,663	+		TX73_011425	0.22	+0.6
2,496,663	+		TX73_011425	0.22	-0.5
2,496,666	-		TX73_011425	0.22	+0.1
2,496,700	+		TX73_011425	0.23	-0.2
2,496,734	+		TX73_011425	0.24	-0.8
2,496,734	-		TX73_011425	0.24	+0.4
2,496,757	-		TX73_011425	0.25	+1.1
2,496,773	+		TX73_011425	0.26	-1.0
2,496,773	+		TX73_011425	0.26	-0.2
2,496,773	+		TX73_011425	0.26	+0.3
2,496,773	+		TX73_011425	0.26	+0.2
2,496,781	-		TX73_011425	0.26	-0.3
2,496,781	-		TX73_011425	0.26	-0.2
2,496,781	-		TX73_011425	0.26	-0.9
2,496,798	+		TX73_011425	0.26	+0.1
2,496,798	+		TX73_011425	0.26	-0.3
2,496,840	-		TX73_011425	0.28	+0.1
2,496,852	+		TX73_011425	0.28	+1.0
2,496,859	+		TX73_011425	0.28	-0.4