Experiment: starvation expt 3; 14 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001570 and TX73_001575 are separated by 463 nucleotides TX73_001575 and TX73_001580 overlap by 23 nucleotides
TX73_001570: TX73_001570 - protein-export chaperone SecB, at 331,955 to 332,428
_001570
TX73_001575: TX73_001575 - Tim44/TimA family putative adaptor protein, at 332,892 to 333,599
_001575
TX73_001580: TX73_001580 - murein transglycosylase A, at 333,577 to 335,070
_001580
Position (kb) 332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 331.923 kb on + strand at 331.931 kb on + strand at 331.931 kb on + strand at 331.931 kb on + strand at 331.939 kb on - strand at 331.939 kb on - strand at 331.939 kb on - strand at 331.956 kb on - strand at 331.961 kb on + strand at 331.961 kb on - strand at 331.967 kb on + strand at 331.970 kb on - strand at 332.003 kb on - strand, within TX73_001570 at 332.172 kb on - strand, within TX73_001570 at 332.177 kb on - strand, within TX73_001570 at 332.182 kb on - strand, within TX73_001570 at 332.187 kb on - strand, within TX73_001570 at 332.208 kb on + strand, within TX73_001570 at 332.308 kb on + strand, within TX73_001570 at 332.318 kb on - strand, within TX73_001570 at 332.397 kb on + strand at 332.404 kb on - strand at 332.405 kb on - strand at 332.406 kb on + strand at 332.407 kb on - strand at 332.414 kb on - strand at 332.442 kb on - strand at 332.447 kb on - strand at 332.451 kb on + strand at 332.455 kb on + strand at 332.468 kb on + strand at 332.473 kb on + strand at 332.481 kb on - strand at 332.491 kb on - strand at 332.496 kb on - strand at 332.501 kb on + strand at 332.501 kb on - strand at 332.509 kb on - strand at 332.531 kb on + strand at 332.536 kb on + strand at 332.536 kb on + strand at 332.539 kb on - strand at 332.542 kb on + strand at 332.544 kb on - strand at 332.544 kb on - strand at 332.545 kb on + strand at 332.550 kb on - strand at 332.550 kb on - strand at 332.550 kb on - strand at 332.552 kb on + strand at 332.554 kb on - strand at 332.570 kb on + strand at 332.580 kb on + strand at 332.580 kb on + strand at 332.580 kb on + strand at 332.580 kb on + strand at 332.599 kb on + strand at 332.607 kb on - strand at 332.607 kb on - strand at 332.623 kb on - strand at 332.630 kb on - strand at 332.630 kb on - strand at 332.630 kb on - strand at 332.630 kb on - strand at 332.648 kb on + strand at 332.669 kb on + strand at 332.673 kb on + strand at 332.673 kb on + strand at 332.673 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.684 kb on + strand at 332.692 kb on - strand at 332.692 kb on - strand at 332.692 kb on - strand at 332.702 kb on - strand at 332.703 kb on + strand at 332.715 kb on + strand at 332.716 kb on - strand at 332.723 kb on - strand at 332.730 kb on + strand at 332.730 kb on + strand at 332.730 kb on + strand at 332.730 kb on + strand at 332.730 kb on + strand at 332.730 kb on + strand at 332.738 kb on - strand at 332.738 kb on - strand at 332.738 kb on - strand at 332.738 kb on - strand at 332.746 kb on + strand at 332.747 kb on + strand at 332.747 kb on + strand at 332.748 kb on - strand at 332.748 kb on - strand at 332.801 kb on + strand at 332.801 kb on + strand at 332.801 kb on + strand at 332.801 kb on - strand at 332.801 kb on - strand at 332.809 kb on - strand at 332.809 kb on - strand at 332.809 kb on - strand at 332.809 kb on - strand at 332.843 kb on + strand at 332.843 kb on + strand at 332.851 kb on - strand at 332.851 kb on - strand at 332.851 kb on - strand at 332.851 kb on - strand at 332.851 kb on - strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.862 kb on + strand at 332.870 kb on - strand at 332.870 kb on - strand at 332.936 kb on - strand at 332.938 kb on - strand at 332.943 kb on + strand at 332.955 kb on + strand at 332.988 kb on + strand, within TX73_001575 at 333.011 kb on + strand, within TX73_001575 at 333.019 kb on - strand, within TX73_001575 at 333.019 kb on - strand, within TX73_001575 at 333.032 kb on + strand, within TX73_001575 at 333.032 kb on + strand, within TX73_001575 at 333.053 kb on + strand, within TX73_001575 at 333.084 kb on - strand, within TX73_001575 at 333.086 kb on + strand, within TX73_001575 at 333.095 kb on - strand, within TX73_001575 at 333.118 kb on + strand, within TX73_001575 at 333.137 kb on + strand, within TX73_001575 at 333.143 kb on + strand, within TX73_001575 at 333.156 kb on - strand, within TX73_001575 at 333.159 kb on + strand, within TX73_001575 at 333.168 kb on - strand, within TX73_001575 at 333.168 kb on - strand, within TX73_001575 at 333.170 kb on - strand, within TX73_001575 at 333.182 kb on - strand, within TX73_001575 at 333.182 kb on - strand, within TX73_001575 at 333.182 kb on - strand, within TX73_001575 at 333.214 kb on - strand, within TX73_001575 at 333.226 kb on + strand, within TX73_001575 at 333.229 kb on + strand, within TX73_001575 at 333.229 kb on + strand, within TX73_001575 at 333.237 kb on - strand, within TX73_001575 at 333.268 kb on + strand, within TX73_001575 at 333.291 kb on - strand, within TX73_001575 at 333.293 kb on - strand, within TX73_001575 at 333.295 kb on - strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.300 kb on + strand, within TX73_001575 at 333.308 kb on - strand, within TX73_001575 at 333.308 kb on - strand, within TX73_001575 at 333.308 kb on - strand, within TX73_001575 at 333.347 kb on + strand, within TX73_001575 at 333.353 kb on + strand, within TX73_001575 at 333.354 kb on + strand, within TX73_001575 at 333.355 kb on - strand, within TX73_001575 at 333.355 kb on - strand, within TX73_001575 at 333.362 kb on - strand, within TX73_001575 at 333.362 kb on - strand, within TX73_001575 at 333.387 kb on + strand, within TX73_001575 at 333.397 kb on + strand, within TX73_001575 at 333.397 kb on + strand, within TX73_001575 at 333.400 kb on - strand, within TX73_001575 at 333.405 kb on - strand, within TX73_001575 at 333.405 kb on - strand, within TX73_001575 at 333.460 kb on - strand, within TX73_001575 at 333.475 kb on - strand, within TX73_001575 at 333.483 kb on + strand, within TX73_001575 at 333.485 kb on + strand, within TX73_001575 at 333.491 kb on - strand, within TX73_001575 at 333.491 kb on - strand, within TX73_001575 at 333.491 kb on - strand, within TX73_001575 at 333.500 kb on + strand, within TX73_001575 at 333.508 kb on - strand, within TX73_001575 at 333.524 kb on + strand, within TX73_001575 at 333.524 kb on + strand, within TX73_001575 at 333.524 kb on + strand, within TX73_001575 at 333.524 kb on + strand, within TX73_001575 at 333.524 kb on + strand, within TX73_001575 at 333.524 kb on + strand, within TX73_001575 at 333.533 kb on - strand at 333.557 kb on - strand at 333.575 kb on + strand at 333.583 kb on - strand at 333.589 kb on - strand at 333.593 kb on + strand at 333.593 kb on + strand at 333.649 kb on + strand at 333.661 kb on + strand at 333.664 kb on - strand at 333.674 kb on - strand at 333.674 kb on - strand at 333.781 kb on + strand, within TX73_001580 at 333.786 kb on + strand, within TX73_001580 at 333.786 kb on + strand, within TX73_001580 at 333.794 kb on - strand, within TX73_001580 at 333.833 kb on - strand, within TX73_001580 at 333.835 kb on - strand, within TX73_001580 at 333.845 kb on - strand, within TX73_001580 at 333.887 kb on - strand, within TX73_001580 at 333.887 kb on - strand, within TX73_001580 at 333.923 kb on - strand, within TX73_001580 at 333.930 kb on - strand, within TX73_001580 at 333.939 kb on + strand, within TX73_001580 at 333.961 kb on + strand, within TX73_001580 at 333.992 kb on + strand, within TX73_001580 at 334.032 kb on - strand, within TX73_001580 at 334.041 kb on + strand, within TX73_001580 at 334.047 kb on - strand, within TX73_001580 at 334.061 kb on + strand, within TX73_001580 at 334.061 kb on + strand, within TX73_001580 at 334.069 kb on - strand, within TX73_001580 at 334.069 kb on - strand, within TX73_001580 at 334.069 kb on - strand, within TX73_001580 at 334.070 kb on - strand, within TX73_001580 at 334.096 kb on + strand, within TX73_001580 at 334.104 kb on - strand, within TX73_001580 at 334.117 kb on + strand, within TX73_001580 at 334.125 kb on - strand, within TX73_001580 at 334.130 kb on + strand, within TX73_001580 at 334.130 kb on + strand, within TX73_001580 at 334.159 kb on - strand, within TX73_001580 at 334.159 kb on - strand, within TX73_001580 at 334.171 kb on + strand, within TX73_001580 at 334.173 kb on + strand, within TX73_001580 at 334.184 kb on + strand, within TX73_001580 at 334.217 kb on - strand, within TX73_001580 at 334.217 kb on - strand, within TX73_001580 at 334.222 kb on - strand, within TX73_001580 at 334.248 kb on - strand, within TX73_001580 at 334.296 kb on - strand, within TX73_001580 at 334.311 kb on - strand, within TX73_001580 at 334.311 kb on - strand, within TX73_001580 at 334.311 kb on - strand, within TX73_001580 at 334.320 kb on + strand, within TX73_001580 at 334.328 kb on - strand, within TX73_001580 at 334.381 kb on + strand, within TX73_001580 at 334.395 kb on + strand, within TX73_001580 at 334.398 kb on - strand, within TX73_001580 at 334.416 kb on + strand, within TX73_001580 at 334.418 kb on + strand, within TX73_001580 at 334.424 kb on - strand, within TX73_001580 at 334.441 kb on - strand, within TX73_001580 at 334.441 kb on - strand, within TX73_001580 at 334.462 kb on - strand, within TX73_001580 at 334.478 kb on + strand, within TX73_001580 at 334.486 kb on - strand, within TX73_001580 at 334.499 kb on + strand, within TX73_001580 at 334.499 kb on + strand, within TX73_001580 at 334.515 kb on - strand, within TX73_001580 at 334.537 kb on - strand, within TX73_001580 at 334.582 kb on + strand, within TX73_001580 at 334.589 kb on + strand, within TX73_001580 at 334.589 kb on - strand, within TX73_001580
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 3; 14 days; outgrowth in CAAc remove 331,923 + +1.4 331,931 + -0.1 331,931 + -0.3 331,931 + -0.6 331,939 - +0.6 331,939 - -0.8 331,939 - -0.2 331,956 - +0.6 331,961 + -1.8 331,961 - -0.4 331,967 + -1.1 331,970 - -1.2 332,003 - TX73_001570 0.10 +0.6 332,172 - TX73_001570 0.46 -0.8 332,177 - TX73_001570 0.47 +0.2 332,182 - TX73_001570 0.48 -0.4 332,187 - TX73_001570 0.49 -0.8 332,208 + TX73_001570 0.53 -0.6 332,308 + TX73_001570 0.74 +1.2 332,318 - TX73_001570 0.77 -0.8 332,397 + +0.2 332,404 - -2.0 332,405 - -1.4 332,406 + -0.8 332,407 - -1.4 332,414 - -2.0 332,442 - +1.1 332,447 - +0.7 332,451 + +0.0 332,455 + +0.0 332,468 + +0.3 332,473 + +0.3 332,481 - +0.5 332,491 - +0.1 332,496 - -0.4 332,501 + +1.4 332,501 - -0.3 332,509 - -0.1 332,531 + +0.3 332,536 + +0.2 332,536 + +0.1 332,539 - -0.2 332,542 + +0.0 332,544 - -1.1 332,544 - +0.2 332,545 + +0.4 332,550 - -1.1 332,550 - -0.4 332,550 - +0.6 332,552 + -0.1 332,554 - +0.4 332,570 + -0.4 332,580 + +0.6 332,580 + -0.1 332,580 + +0.1 332,580 + +1.2 332,599 + +0.3 332,607 - -0.1 332,607 - +0.3 332,623 - +0.5 332,630 - +0.9 332,630 - -0.8 332,630 - -1.6 332,630 - -0.3 332,648 + +0.8 332,669 + +0.1 332,673 + +1.7 332,673 + +0.2 332,673 + +0.2 332,684 + -0.1 332,684 + +0.3 332,684 + -0.0 332,684 + -0.9 332,684 + -0.2 332,684 + -1.0 332,684 + -0.5 332,684 + -0.1 332,684 + -0.3 332,684 + +0.5 332,692 - -0.0 332,692 - +0.4 332,692 - -0.2 332,702 - -0.6 332,703 + +0.5 332,715 + +0.6 332,716 - +0.7 332,723 - +0.2 332,730 + +0.2 332,730 + -0.3 332,730 + +0.1 332,730 + +0.2 332,730 + -0.7 332,730 + +0.8 332,738 - +0.2 332,738 - +0.3 332,738 - -0.4 332,738 - +0.4 332,746 + +0.8 332,747 + +0.0 332,747 + +0.8 332,748 - -0.3 332,748 - +0.1 332,801 + -0.2 332,801 + +0.5 332,801 + -0.3 332,801 - -0.0 332,801 - +0.4 332,809 - -0.2 332,809 - -0.1 332,809 - +0.6 332,809 - -0.2 332,843 + +0.7 332,843 + -0.6 332,851 - -0.3 332,851 - +0.1 332,851 - -0.8 332,851 - -0.0 332,851 - +1.0 332,862 + +0.3 332,862 + +1.2 332,862 + -0.0 332,862 + +0.5 332,862 + -0.9 332,862 + -1.5 332,862 + +0.6 332,862 + +0.4 332,862 + -0.1 332,862 + +0.2 332,870 - -0.3 332,870 - -1.1 332,936 - -1.3 332,938 - -1.1 332,943 + +0.2 332,955 + -0.0 332,988 + TX73_001575 0.14 -0.9 333,011 + TX73_001575 0.17 +1.2 333,019 - TX73_001575 0.18 -1.9 333,019 - TX73_001575 0.18 -2.0 333,032 + TX73_001575 0.20 -1.2 333,032 + TX73_001575 0.20 -1.0 333,053 + TX73_001575 0.23 +0.2 333,084 - TX73_001575 0.27 -1.3 333,086 + TX73_001575 0.27 -1.5 333,095 - TX73_001575 0.29 +0.3 333,118 + TX73_001575 0.32 -1.3 333,137 + TX73_001575 0.35 -0.8 333,143 + TX73_001575 0.35 -0.6 333,156 - TX73_001575 0.37 -1.5 333,159 + TX73_001575 0.38 -1.5 333,168 - TX73_001575 0.39 -1.0 333,168 - TX73_001575 0.39 -1.4 333,170 - TX73_001575 0.39 -1.2 333,182 - TX73_001575 0.41 -0.4 333,182 - TX73_001575 0.41 -0.9 333,182 - TX73_001575 0.41 -0.9 333,214 - TX73_001575 0.45 -0.7 333,226 + TX73_001575 0.47 -2.0 333,229 + TX73_001575 0.48 -2.5 333,229 + TX73_001575 0.48 -1.0 333,237 - TX73_001575 0.49 +0.1 333,268 + TX73_001575 0.53 +0.7 333,291 - TX73_001575 0.56 -1.4 333,293 - TX73_001575 0.57 +0.1 333,295 - TX73_001575 0.57 -0.7 333,300 + TX73_001575 0.58 +1.2 333,300 + TX73_001575 0.58 -1.3 333,300 + TX73_001575 0.58 -1.5 333,300 + TX73_001575 0.58 -0.8 333,300 + TX73_001575 0.58 -0.6 333,300 + TX73_001575 0.58 -1.1 333,300 + TX73_001575 0.58 -1.3 333,300 + TX73_001575 0.58 -2.1 333,300 + TX73_001575 0.58 -2.8 333,308 - TX73_001575 0.59 -0.0 333,308 - TX73_001575 0.59 -1.4 333,308 - TX73_001575 0.59 -1.0 333,347 + TX73_001575 0.64 -0.4 333,353 + TX73_001575 0.65 -2.5 333,354 + TX73_001575 0.65 -2.1 333,355 - TX73_001575 0.65 -1.0 333,355 - TX73_001575 0.65 -1.9 333,362 - TX73_001575 0.66 -0.6 333,362 - TX73_001575 0.66 -0.4 333,387 + TX73_001575 0.70 -0.5 333,397 + TX73_001575 0.71 +0.2 333,397 + TX73_001575 0.71 -0.2 333,400 - TX73_001575 0.72 +1.0 333,405 - TX73_001575 0.72 -1.0 333,405 - TX73_001575 0.72 -1.1 333,460 - TX73_001575 0.80 -1.1 333,475 - TX73_001575 0.82 +0.6 333,483 + TX73_001575 0.83 -1.9 333,485 + TX73_001575 0.84 +0.1 333,491 - TX73_001575 0.85 +0.2 333,491 - TX73_001575 0.85 -0.5 333,491 - TX73_001575 0.85 -1.2 333,500 + TX73_001575 0.86 -2.3 333,508 - TX73_001575 0.87 -0.5 333,524 + TX73_001575 0.89 -1.2 333,524 + TX73_001575 0.89 -0.8 333,524 + TX73_001575 0.89 -1.6 333,524 + TX73_001575 0.89 -1.9 333,524 + TX73_001575 0.89 -2.1 333,524 + TX73_001575 0.89 -2.1 333,533 - -1.9 333,557 - -1.0 333,575 + -0.5 333,583 - -1.1 333,589 - -1.0 333,593 + -1.8 333,593 + -0.7 333,649 + -1.2 333,661 + +0.0 333,664 - -0.6 333,674 - +1.3 333,674 - +0.3 333,781 + TX73_001580 0.14 +0.2 333,786 + TX73_001580 0.14 +0.0 333,786 + TX73_001580 0.14 -1.3 333,794 - TX73_001580 0.15 -1.2 333,833 - TX73_001580 0.17 -0.8 333,835 - TX73_001580 0.17 +0.5 333,845 - TX73_001580 0.18 +0.2 333,887 - TX73_001580 0.21 +0.1 333,887 - TX73_001580 0.21 -1.1 333,923 - TX73_001580 0.23 -2.1 333,930 - TX73_001580 0.24 -0.0 333,939 + TX73_001580 0.24 -0.1 333,961 + TX73_001580 0.26 -1.3 333,992 + TX73_001580 0.28 -0.3 334,032 - TX73_001580 0.30 +0.9 334,041 + TX73_001580 0.31 +0.5 334,047 - TX73_001580 0.31 +0.1 334,061 + TX73_001580 0.32 -0.8 334,061 + TX73_001580 0.32 +0.8 334,069 - TX73_001580 0.33 -0.8 334,069 - TX73_001580 0.33 +0.1 334,069 - TX73_001580 0.33 -0.5 334,070 - TX73_001580 0.33 -0.2 334,096 + TX73_001580 0.35 +0.1 334,104 - TX73_001580 0.35 -0.3 334,117 + TX73_001580 0.36 -0.1 334,125 - TX73_001580 0.37 -0.7 334,130 + TX73_001580 0.37 +0.8 334,130 + TX73_001580 0.37 -0.5 334,159 - TX73_001580 0.39 +0.3 334,159 - TX73_001580 0.39 -1.1 334,171 + TX73_001580 0.40 -0.1 334,173 + TX73_001580 0.40 -0.9 334,184 + TX73_001580 0.41 +0.3 334,217 - TX73_001580 0.43 -0.5 334,217 - TX73_001580 0.43 +0.9 334,222 - TX73_001580 0.43 -0.2 334,248 - TX73_001580 0.45 -1.4 334,296 - TX73_001580 0.48 +0.4 334,311 - TX73_001580 0.49 -0.0 334,311 - TX73_001580 0.49 +1.1 334,311 - TX73_001580 0.49 +0.7 334,320 + TX73_001580 0.50 +0.5 334,328 - TX73_001580 0.50 +0.1 334,381 + TX73_001580 0.54 +0.2 334,395 + TX73_001580 0.55 -0.1 334,398 - TX73_001580 0.55 -0.4 334,416 + TX73_001580 0.56 +1.2 334,418 + TX73_001580 0.56 +0.4 334,424 - TX73_001580 0.57 +0.0 334,441 - TX73_001580 0.58 -0.8 334,441 - TX73_001580 0.58 -0.1 334,462 - TX73_001580 0.59 +0.4 334,478 + TX73_001580 0.60 +1.0 334,486 - TX73_001580 0.61 -0.5 334,499 + TX73_001580 0.62 +0.9 334,499 + TX73_001580 0.62 +0.2 334,515 - TX73_001580 0.63 -0.5 334,537 - TX73_001580 0.64 -0.2 334,582 + TX73_001580 0.67 +0.1 334,589 + TX73_001580 0.68 +0.2 334,589 - TX73_001580 0.68 +0.1
Or see this region's nucleotide sequence