Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001320

Experiment: starvation expt 3; 14 days; outgrowth in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001310 and TX73_001315 are separated by 184 nucleotidesTX73_001315 and TX73_001320 are separated by 2 nucleotidesTX73_001320 and TX73_001325 are separated by 35 nucleotides TX73_001310: TX73_001310 - methyltransferase, at 276,543 to 277,205 _001310 TX73_001315: TX73_001315 - EVE domain-containing protein, at 277,390 to 277,803 _001315 TX73_001320: TX73_001320 - NAD(P)-dependent glycerol-3-phosphate dehydrogenase, at 277,806 to 278,795 _001320 TX73_001325: TX73_001325 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 278,831 to 279,904 _001325 Position (kb) 277 278 279Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 276.808 kb on - strand, within TX73_001310at 276.813 kb on + strand, within TX73_001310at 276.846 kb on + strand, within TX73_001310at 276.849 kb on - strand, within TX73_001310at 276.851 kb on + strand, within TX73_001310at 276.859 kb on - strand, within TX73_001310at 276.870 kb on + strand, within TX73_001310at 276.887 kb on + strand, within TX73_001310at 276.940 kb on - strand, within TX73_001310at 276.963 kb on - strand, within TX73_001310at 276.987 kb on + strand, within TX73_001310at 276.987 kb on + strand, within TX73_001310at 276.995 kb on - strand, within TX73_001310at 276.995 kb on - strand, within TX73_001310at 277.010 kb on - strand, within TX73_001310at 277.052 kb on + strand, within TX73_001310at 277.078 kb on + strand, within TX73_001310at 277.078 kb on - strand, within TX73_001310at 277.100 kb on - strand, within TX73_001310at 277.141 kb on + strandat 277.151 kb on + strandat 277.174 kb on - strandat 277.175 kb on - strandat 277.175 kb on - strandat 277.197 kb on + strandat 277.198 kb on - strandat 277.198 kb on - strandat 277.246 kb on + strandat 277.246 kb on + strandat 277.254 kb on - strandat 277.254 kb on - strandat 277.254 kb on - strandat 277.254 kb on - strandat 277.277 kb on + strandat 277.285 kb on + strandat 277.290 kb on + strandat 277.333 kb on + strandat 277.369 kb on + strandat 277.396 kb on - strandat 277.396 kb on - strandat 277.397 kb on - strandat 277.397 kb on - strandat 277.433 kb on - strand, within TX73_001315at 277.475 kb on + strand, within TX73_001315at 277.497 kb on - strand, within TX73_001315at 277.515 kb on + strand, within TX73_001315at 277.592 kb on - strand, within TX73_001315at 277.592 kb on - strand, within TX73_001315at 277.616 kb on - strand, within TX73_001315at 277.628 kb on + strand, within TX73_001315at 277.717 kb on + strand, within TX73_001315at 277.721 kb on - strand, within TX73_001315at 277.725 kb on - strand, within TX73_001315at 277.725 kb on - strand, within TX73_001315at 277.766 kb on - strandat 277.811 kb on - strandat 277.838 kb on + strandat 277.914 kb on + strand, within TX73_001320at 277.915 kb on + strand, within TX73_001320at 277.923 kb on - strand, within TX73_001320at 277.930 kb on + strand, within TX73_001320at 277.930 kb on + strand, within TX73_001320at 277.932 kb on + strand, within TX73_001320at 277.951 kb on + strand, within TX73_001320at 277.951 kb on + strand, within TX73_001320at 277.951 kb on + strand, within TX73_001320at 277.953 kb on + strand, within TX73_001320at 277.959 kb on - strand, within TX73_001320at 277.959 kb on - strand, within TX73_001320at 277.959 kb on - strand, within TX73_001320at 278.012 kb on + strand, within TX73_001320at 278.015 kb on - strand, within TX73_001320at 278.026 kb on - strand, within TX73_001320at 278.050 kb on + strand, within TX73_001320at 278.053 kb on - strand, within TX73_001320at 278.070 kb on + strand, within TX73_001320at 278.082 kb on - strand, within TX73_001320at 278.085 kb on + strand, within TX73_001320at 278.087 kb on - strand, within TX73_001320at 278.088 kb on + strand, within TX73_001320at 278.103 kb on - strand, within TX73_001320at 278.103 kb on - strand, within TX73_001320at 278.103 kb on - strand, within TX73_001320at 278.103 kb on - strand, within TX73_001320at 278.110 kb on + strand, within TX73_001320at 278.110 kb on + strand, within TX73_001320at 278.110 kb on + strand, within TX73_001320at 278.110 kb on + strand, within TX73_001320at 278.110 kb on + strand, within TX73_001320at 278.113 kb on - strand, within TX73_001320at 278.118 kb on - strand, within TX73_001320at 278.118 kb on - strand, within TX73_001320at 278.118 kb on - strand, within TX73_001320at 278.118 kb on - strand, within TX73_001320at 278.118 kb on - strand, within TX73_001320at 278.134 kb on + strand, within TX73_001320at 278.191 kb on + strand, within TX73_001320at 278.219 kb on + strand, within TX73_001320at 278.223 kb on + strand, within TX73_001320at 278.238 kb on + strand, within TX73_001320at 278.241 kb on + strand, within TX73_001320at 278.241 kb on + strand, within TX73_001320at 278.241 kb on + strand, within TX73_001320at 278.243 kb on + strand, within TX73_001320at 278.243 kb on + strand, within TX73_001320at 278.243 kb on + strand, within TX73_001320at 278.251 kb on - strand, within TX73_001320at 278.270 kb on - strand, within TX73_001320at 278.275 kb on - strand, within TX73_001320at 278.276 kb on + strand, within TX73_001320at 278.307 kb on - strand, within TX73_001320at 278.322 kb on + strand, within TX73_001320at 278.322 kb on + strand, within TX73_001320at 278.330 kb on - strand, within TX73_001320at 278.443 kb on + strand, within TX73_001320at 278.443 kb on + strand, within TX73_001320at 278.443 kb on + strand, within TX73_001320at 278.443 kb on + strand, within TX73_001320at 278.443 kb on + strand, within TX73_001320at 278.443 kb on + strand, within TX73_001320at 278.453 kb on + strand, within TX73_001320at 278.460 kb on + strand, within TX73_001320at 278.481 kb on - strand, within TX73_001320at 278.497 kb on - strand, within TX73_001320at 278.516 kb on + strand, within TX73_001320at 278.534 kb on - strand, within TX73_001320at 278.534 kb on - strand, within TX73_001320at 278.541 kb on - strand, within TX73_001320at 278.541 kb on - strand, within TX73_001320at 278.546 kb on - strand, within TX73_001320at 278.557 kb on + strand, within TX73_001320at 278.615 kb on - strand, within TX73_001320at 278.642 kb on + strand, within TX73_001320at 278.665 kb on + strand, within TX73_001320at 278.689 kb on - strand, within TX73_001320at 278.694 kb on + strand, within TX73_001320at 278.700 kb on - strandat 278.716 kb on - strandat 278.726 kb on + strandat 278.730 kb on + strandat 278.739 kb on - strandat 278.748 kb on + strandat 278.748 kb on + strandat 278.754 kb on + strandat 278.754 kb on - strandat 278.804 kb on + strandat 278.813 kb on - strandat 278.813 kb on - strandat 278.818 kb on + strandat 278.829 kb on + strandat 278.837 kb on - strandat 278.874 kb on - strandat 278.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation expt 3; 14 days; outgrowth in CAAc
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276,808 - TX73_001310 0.40 -0.4
276,813 + TX73_001310 0.41 +0.4
276,846 + TX73_001310 0.46 +0.1
276,849 - TX73_001310 0.46 -0.5
276,851 + TX73_001310 0.46 +0.7
276,859 - TX73_001310 0.48 -0.4
276,870 + TX73_001310 0.49 -0.3
276,887 + TX73_001310 0.52 +0.5
276,940 - TX73_001310 0.60 -0.1
276,963 - TX73_001310 0.63 +1.6
276,987 + TX73_001310 0.67 +0.5
276,987 + TX73_001310 0.67 +0.2
276,995 - TX73_001310 0.68 -2.0
276,995 - TX73_001310 0.68 -1.4
277,010 - TX73_001310 0.70 -0.3
277,052 + TX73_001310 0.77 -0.0
277,078 + TX73_001310 0.81 +0.2
277,078 - TX73_001310 0.81 -0.9
277,100 - TX73_001310 0.84 -0.1
277,141 + -0.0
277,151 + -0.4
277,174 - +0.4
277,175 - +1.2
277,175 - +1.3
277,197 + +0.1
277,198 - +0.7
277,198 - +0.7
277,246 + +1.2
277,246 + -0.9
277,254 - +0.4
277,254 - +0.5
277,254 - -0.3
277,254 - -0.6
277,277 + -0.5
277,285 + -0.3
277,290 + +0.3
277,333 + +0.3
277,369 + +0.1
277,396 - +0.5
277,396 - +0.9
277,397 - +0.9
277,397 - +0.4
277,433 - TX73_001315 0.10 +0.3
277,475 + TX73_001315 0.21 -0.1
277,497 - TX73_001315 0.26 +0.3
277,515 + TX73_001315 0.30 -0.4
277,592 - TX73_001315 0.49 -0.3
277,592 - TX73_001315 0.49 -0.4
277,616 - TX73_001315 0.55 +0.1
277,628 + TX73_001315 0.57 -0.2
277,717 + TX73_001315 0.79 +0.0
277,721 - TX73_001315 0.80 +0.5
277,725 - TX73_001315 0.81 +0.8
277,725 - TX73_001315 0.81 -0.2
277,766 - -0.1
277,811 - -0.4
277,838 + -3.9
277,914 + TX73_001320 0.11 -4.5
277,915 + TX73_001320 0.11 -4.0
277,923 - TX73_001320 0.12 -3.7
277,930 + TX73_001320 0.13 -4.8
277,930 + TX73_001320 0.13 -4.7
277,932 + TX73_001320 0.13 -3.9
277,951 + TX73_001320 0.15 -4.7
277,951 + TX73_001320 0.15 -4.2
277,951 + TX73_001320 0.15 -5.5
277,953 + TX73_001320 0.15 -4.4
277,959 - TX73_001320 0.15 -4.0
277,959 - TX73_001320 0.15 -3.1
277,959 - TX73_001320 0.15 -0.4
278,012 + TX73_001320 0.21 -3.8
278,015 - TX73_001320 0.21 -4.0
278,026 - TX73_001320 0.22 -4.1
278,050 + TX73_001320 0.25 -4.1
278,053 - TX73_001320 0.25 -4.7
278,070 + TX73_001320 0.27 -4.5
278,082 - TX73_001320 0.28 -5.3
278,085 + TX73_001320 0.28 -4.6
278,087 - TX73_001320 0.28 -4.4
278,088 + TX73_001320 0.28 -5.3
278,103 - TX73_001320 0.30 -4.7
278,103 - TX73_001320 0.30 -5.2
278,103 - TX73_001320 0.30 -2.7
278,103 - TX73_001320 0.30 -4.4
278,110 + TX73_001320 0.31 -4.2
278,110 + TX73_001320 0.31 -4.7
278,110 + TX73_001320 0.31 -5.2
278,110 + TX73_001320 0.31 -5.5
278,110 + TX73_001320 0.31 -4.2
278,113 - TX73_001320 0.31 -1.6
278,118 - TX73_001320 0.32 -4.5
278,118 - TX73_001320 0.32 -4.8
278,118 - TX73_001320 0.32 -5.4
278,118 - TX73_001320 0.32 -4.7
278,118 - TX73_001320 0.32 -3.1
278,134 + TX73_001320 0.33 -2.6
278,191 + TX73_001320 0.39 -3.2
278,219 + TX73_001320 0.42 -4.0
278,223 + TX73_001320 0.42 -1.6
278,238 + TX73_001320 0.44 -4.5
278,241 + TX73_001320 0.44 -4.9
278,241 + TX73_001320 0.44 -4.1
278,241 + TX73_001320 0.44 -4.1
278,243 + TX73_001320 0.44 -5.1
278,243 + TX73_001320 0.44 -4.2
278,243 + TX73_001320 0.44 -4.6
278,251 - TX73_001320 0.45 -3.3
278,270 - TX73_001320 0.47 -4.7
278,275 - TX73_001320 0.47 -3.7
278,276 + TX73_001320 0.47 -4.3
278,307 - TX73_001320 0.51 -4.5
278,322 + TX73_001320 0.52 -5.6
278,322 + TX73_001320 0.52 -4.6
278,330 - TX73_001320 0.53 -3.1
278,443 + TX73_001320 0.64 -4.3
278,443 + TX73_001320 0.64 -4.5
278,443 + TX73_001320 0.64 -4.5
278,443 + TX73_001320 0.64 -4.7
278,443 + TX73_001320 0.64 -3.1
278,443 + TX73_001320 0.64 -4.8
278,453 + TX73_001320 0.65 -4.6
278,460 + TX73_001320 0.66 -4.4
278,481 - TX73_001320 0.68 -5.1
278,497 - TX73_001320 0.70 -3.9
278,516 + TX73_001320 0.72 -4.0
278,534 - TX73_001320 0.74 -5.0
278,534 - TX73_001320 0.74 -4.3
278,541 - TX73_001320 0.74 -3.5
278,541 - TX73_001320 0.74 -4.7
278,546 - TX73_001320 0.75 -4.7
278,557 + TX73_001320 0.76 -3.3
278,615 - TX73_001320 0.82 -5.5
278,642 + TX73_001320 0.84 -2.8
278,665 + TX73_001320 0.87 -4.7
278,689 - TX73_001320 0.89 -2.0
278,694 + TX73_001320 0.90 -5.3
278,700 - -3.3
278,716 - -4.0
278,726 + -3.8
278,730 + -3.3
278,739 - -4.0
278,748 + -4.1
278,748 + -5.7
278,754 + -5.0
278,754 - -3.3
278,804 + +0.6
278,813 - +0.1
278,813 - -0.2
278,818 + -0.8
278,829 + -0.6
278,837 - -0.1
278,874 - -0.1
278,890 + +0.2

Or see this region's nucleotide sequence