Experiment: starvation expt 3; 14 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000895 and TX73_000900 are separated by 271 nucleotides TX73_000900 and TX73_000905 overlap by 4 nucleotides TX73_000905 and TX73_000910 are separated by 183 nucleotides
TX73_000895: TX73_000895 - glycosyltransferase family 1 protein, at 191,262 to 192,332
_000895
TX73_000900: TX73_000900 - SDR family oxidoreductase, at 192,604 to 193,551
_000900
TX73_000905: TX73_000905 - RNA pyrophosphohydrolase, at 193,548 to 194,069
_000905
TX73_000910: TX73_000910 - F0F1 ATP synthase subunit epsilon, at 194,253 to 194,660
_000910
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 191.604 kb on - strand, within TX73_000895 at 191.604 kb on - strand, within TX73_000895 at 191.604 kb on - strand, within TX73_000895 at 191.650 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.681 kb on - strand, within TX73_000895 at 191.744 kb on + strand, within TX73_000895 at 191.790 kb on - strand, within TX73_000895 at 191.792 kb on - strand, within TX73_000895 at 191.795 kb on - strand, within TX73_000895 at 191.861 kb on - strand, within TX73_000895 at 191.867 kb on - strand, within TX73_000895 at 191.871 kb on - strand, within TX73_000895 at 191.902 kb on + strand, within TX73_000895 at 191.908 kb on + strand, within TX73_000895 at 191.910 kb on - strand, within TX73_000895 at 191.910 kb on - strand, within TX73_000895 at 191.922 kb on - strand, within TX73_000895 at 191.928 kb on - strand, within TX73_000895 at 191.928 kb on - strand, within TX73_000895 at 191.928 kb on - strand, within TX73_000895 at 191.936 kb on + strand, within TX73_000895 at 191.953 kb on + strand, within TX73_000895 at 191.970 kb on + strand, within TX73_000895 at 191.970 kb on + strand, within TX73_000895 at 191.999 kb on + strand, within TX73_000895 at 192.046 kb on + strand, within TX73_000895 at 192.052 kb on + strand, within TX73_000895 at 192.062 kb on + strand, within TX73_000895 at 192.062 kb on + strand, within TX73_000895 at 192.062 kb on + strand, within TX73_000895 at 192.064 kb on + strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.118 kb on + strand, within TX73_000895 at 192.128 kb on + strand, within TX73_000895 at 192.135 kb on + strand, within TX73_000895 at 192.136 kb on - strand, within TX73_000895 at 192.172 kb on - strand, within TX73_000895 at 192.175 kb on + strand, within TX73_000895 at 192.188 kb on - strand, within TX73_000895 at 192.195 kb on + strand, within TX73_000895 at 192.196 kb on + strand, within TX73_000895 at 192.217 kb on + strand, within TX73_000895 at 192.224 kb on + strand, within TX73_000895 at 192.254 kb on + strand at 192.254 kb on + strand at 192.254 kb on + strand at 192.259 kb on + strand at 192.262 kb on - strand at 192.262 kb on - strand at 192.262 kb on - strand at 192.262 kb on - strand at 192.269 kb on + strand at 192.289 kb on + strand at 192.290 kb on + strand at 192.313 kb on - strand at 192.313 kb on - strand at 192.315 kb on + strand at 192.328 kb on + strand at 192.336 kb on - strand at 192.346 kb on - strand at 192.395 kb on + strand at 192.403 kb on - strand at 192.406 kb on + strand at 192.412 kb on + strand at 192.414 kb on - strand at 192.414 kb on - strand at 192.414 kb on - strand at 192.420 kb on - strand at 192.474 kb on + strand at 192.518 kb on + strand at 192.563 kb on + strand at 192.563 kb on + strand at 192.563 kb on + strand at 192.563 kb on + strand at 192.571 kb on - strand at 192.571 kb on - strand at 192.580 kb on - strand at 192.583 kb on + strand at 192.584 kb on + strand at 192.584 kb on + strand at 192.587 kb on - strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.592 kb on - strand at 192.594 kb on + strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.615 kb on - strand at 192.653 kb on + strand at 192.661 kb on - strand at 192.661 kb on - strand at 192.661 kb on - strand at 192.673 kb on - strand at 192.686 kb on + strand at 192.754 kb on + strand, within TX73_000900 at 192.755 kb on - strand, within TX73_000900 at 192.769 kb on - strand, within TX73_000900 at 192.842 kb on + strand, within TX73_000900 at 192.844 kb on + strand, within TX73_000900 at 192.850 kb on - strand, within TX73_000900 at 192.863 kb on + strand, within TX73_000900 at 192.863 kb on + strand, within TX73_000900 at 192.863 kb on + strand, within TX73_000900 at 192.871 kb on - strand, within TX73_000900 at 192.885 kb on - strand, within TX73_000900 at 192.915 kb on - strand, within TX73_000900 at 192.926 kb on - strand, within TX73_000900 at 192.949 kb on + strand, within TX73_000900 at 192.949 kb on + strand, within TX73_000900 at 192.963 kb on + strand, within TX73_000900 at 192.971 kb on - strand, within TX73_000900 at 192.972 kb on - strand, within TX73_000900 at 193.002 kb on + strand, within TX73_000900 at 193.007 kb on - strand, within TX73_000900 at 193.013 kb on + strand, within TX73_000900 at 193.022 kb on - strand, within TX73_000900 at 193.040 kb on + strand, within TX73_000900 at 193.046 kb on + strand, within TX73_000900 at 193.107 kb on + strand, within TX73_000900 at 193.115 kb on - strand, within TX73_000900 at 193.126 kb on + strand, within TX73_000900 at 193.133 kb on - strand, within TX73_000900 at 193.134 kb on - strand, within TX73_000900 at 193.154 kb on - strand, within TX73_000900 at 193.159 kb on - strand, within TX73_000900 at 193.171 kb on + strand, within TX73_000900 at 193.187 kb on - strand, within TX73_000900 at 193.195 kb on - strand, within TX73_000900 at 193.214 kb on - strand, within TX73_000900 at 193.232 kb on + strand, within TX73_000900 at 193.256 kb on + strand, within TX73_000900 at 193.264 kb on - strand, within TX73_000900 at 193.264 kb on - strand, within TX73_000900 at 193.273 kb on + strand, within TX73_000900 at 193.339 kb on - strand, within TX73_000900 at 193.375 kb on + strand, within TX73_000900 at 193.391 kb on + strand, within TX73_000900 at 193.399 kb on - strand, within TX73_000900 at 193.399 kb on - strand, within TX73_000900 at 193.435 kb on - strand, within TX73_000900 at 193.483 kb on - strand at 193.490 kb on - strand at 193.505 kb on + strand at 193.505 kb on + strand at 193.505 kb on + strand at 193.505 kb on + strand at 193.505 kb on + strand at 193.513 kb on - strand at 193.513 kb on - strand at 193.527 kb on + strand at 193.559 kb on - strand at 193.570 kb on + strand at 193.613 kb on - strand, within TX73_000905 at 193.615 kb on - strand, within TX73_000905 at 193.615 kb on - strand, within TX73_000905 at 193.615 kb on - strand, within TX73_000905 at 193.625 kb on + strand, within TX73_000905 at 193.625 kb on + strand, within TX73_000905 at 193.626 kb on + strand, within TX73_000905 at 193.659 kb on + strand, within TX73_000905 at 193.681 kb on - strand, within TX73_000905 at 193.734 kb on + strand, within TX73_000905 at 193.758 kb on - strand, within TX73_000905 at 193.772 kb on - strand, within TX73_000905 at 193.774 kb on + strand, within TX73_000905 at 193.821 kb on + strand, within TX73_000905 at 193.822 kb on - strand, within TX73_000905 at 193.829 kb on - strand, within TX73_000905 at 193.866 kb on + strand, within TX73_000905 at 193.894 kb on - strand, within TX73_000905 at 193.894 kb on - strand, within TX73_000905 at 193.981 kb on - strand, within TX73_000905 at 194.020 kb on + strand at 194.024 kb on - strand at 194.039 kb on - strand at 194.046 kb on - strand at 194.046 kb on - strand at 194.046 kb on - strand at 194.048 kb on + strand at 194.048 kb on + strand at 194.048 kb on + strand at 194.048 kb on + strand at 194.056 kb on - strand at 194.056 kb on - strand at 194.058 kb on + strand at 194.058 kb on + strand at 194.058 kb on + strand at 194.066 kb on - strand at 194.066 kb on - strand at 194.066 kb on - strand at 194.066 kb on - strand at 194.066 kb on - strand at 194.066 kb on - strand at 194.066 kb on - strand at 194.071 kb on - strand at 194.107 kb on + strand at 194.107 kb on + strand at 194.107 kb on + strand at 194.107 kb on + strand at 194.115 kb on - strand at 194.115 kb on - strand at 194.120 kb on + strand at 194.186 kb on - strand at 194.204 kb on + strand at 194.216 kb on - strand at 194.231 kb on + strand at 194.231 kb on + strand at 194.234 kb on + strand at 194.239 kb on + strand at 194.239 kb on - strand at 194.239 kb on - strand at 194.261 kb on + strand at 194.266 kb on - strand at 194.268 kb on + strand at 194.276 kb on - strand at 194.290 kb on + strand at 194.298 kb on - strand, within TX73_000910 at 194.298 kb on - strand, within TX73_000910 at 194.298 kb on - strand, within TX73_000910 at 194.298 kb on - strand, within TX73_000910 at 194.388 kb on + strand, within TX73_000910 at 194.442 kb on - strand, within TX73_000910
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 3; 14 days; outgrowth in CAAc remove 191,604 - TX73_000895 0.32 -0.2 191,604 - TX73_000895 0.32 -1.4 191,604 - TX73_000895 0.32 -0.1 191,650 + TX73_000895 0.36 +0.4 191,656 + TX73_000895 0.37 -1.3 191,656 + TX73_000895 0.37 -0.4 191,656 + TX73_000895 0.37 -0.8 191,656 + TX73_000895 0.37 +0.0 191,681 - TX73_000895 0.39 -1.0 191,744 + TX73_000895 0.45 +0.6 191,790 - TX73_000895 0.49 +0.5 191,792 - TX73_000895 0.49 -2.6 191,795 - TX73_000895 0.50 +0.8 191,861 - TX73_000895 0.56 -1.0 191,867 - TX73_000895 0.56 -0.5 191,871 - TX73_000895 0.57 -3.0 191,902 + TX73_000895 0.60 +0.2 191,908 + TX73_000895 0.60 -0.3 191,910 - TX73_000895 0.61 +0.0 191,910 - TX73_000895 0.61 -3.6 191,922 - TX73_000895 0.62 +0.2 191,928 - TX73_000895 0.62 -1.1 191,928 - TX73_000895 0.62 -1.3 191,928 - TX73_000895 0.62 +0.5 191,936 + TX73_000895 0.63 +0.6 191,953 + TX73_000895 0.65 -1.4 191,970 + TX73_000895 0.66 -0.7 191,970 + TX73_000895 0.66 -1.0 191,999 + TX73_000895 0.69 -0.6 192,046 + TX73_000895 0.73 -2.8 192,052 + TX73_000895 0.74 +0.3 192,062 + TX73_000895 0.75 -0.7 192,062 + TX73_000895 0.75 -2.0 192,062 + TX73_000895 0.75 +0.3 192,064 + TX73_000895 0.75 -1.5 192,072 - TX73_000895 0.76 -0.3 192,072 - TX73_000895 0.76 -2.0 192,072 - TX73_000895 0.76 -0.7 192,072 - TX73_000895 0.76 -0.7 192,072 - TX73_000895 0.76 -0.7 192,118 + TX73_000895 0.80 -0.0 192,128 + TX73_000895 0.81 -1.7 192,135 + TX73_000895 0.82 +0.3 192,136 - TX73_000895 0.82 -1.1 192,172 - TX73_000895 0.85 -0.1 192,175 + TX73_000895 0.85 -0.4 192,188 - TX73_000895 0.86 +0.0 192,195 + TX73_000895 0.87 -1.9 192,196 + TX73_000895 0.87 +0.1 192,217 + TX73_000895 0.89 -0.1 192,224 + TX73_000895 0.90 -0.1 192,254 + +0.7 192,254 + -2.1 192,254 + +1.2 192,259 + -0.7 192,262 - +0.5 192,262 - -1.1 192,262 - -0.1 192,262 - +0.9 192,269 + -0.6 192,289 + +0.2 192,290 + -0.7 192,313 - -1.4 192,313 - +0.2 192,315 + -0.7 192,328 + +0.1 192,336 - -0.3 192,346 - +0.6 192,395 + -1.6 192,403 - -0.1 192,406 + +0.6 192,412 + +1.0 192,414 - -0.6 192,414 - +0.9 192,414 - -1.1 192,420 - -0.1 192,474 + +0.3 192,518 + -0.4 192,563 + -0.7 192,563 + -0.2 192,563 + +0.3 192,563 + -0.4 192,571 - -0.5 192,571 - +0.1 192,580 - +0.1 192,583 + +1.1 192,584 + +0.3 192,584 + +0.2 192,587 - +1.2 192,589 + -0.1 192,589 + +0.2 192,589 + +0.3 192,589 + -1.3 192,589 + -0.3 192,589 + +0.5 192,589 + +0.2 192,589 + +1.3 192,589 + +0.9 192,589 + -1.0 192,589 + +0.5 192,589 + +0.7 192,592 - -0.3 192,594 + +0.6 192,597 - -0.1 192,597 - +0.2 192,597 - +0.0 192,597 - +1.1 192,597 - -0.0 192,597 - -0.9 192,597 - -1.3 192,597 - +0.1 192,597 - +0.1 192,597 - +0.2 192,597 - +1.3 192,597 - -0.7 192,615 - -1.2 192,653 + -1.5 192,661 - -0.6 192,661 - +1.5 192,661 - -0.3 192,673 - +0.6 192,686 + +0.3 192,754 + TX73_000900 0.16 -0.8 192,755 - TX73_000900 0.16 -0.5 192,769 - TX73_000900 0.17 -1.2 192,842 + TX73_000900 0.25 +0.2 192,844 + TX73_000900 0.25 -0.4 192,850 - TX73_000900 0.26 +0.3 192,863 + TX73_000900 0.27 +0.8 192,863 + TX73_000900 0.27 +3.2 192,863 + TX73_000900 0.27 +0.9 192,871 - TX73_000900 0.28 -1.3 192,885 - TX73_000900 0.30 -2.5 192,915 - TX73_000900 0.33 +0.9 192,926 - TX73_000900 0.34 -0.1 192,949 + TX73_000900 0.36 -1.0 192,949 + TX73_000900 0.36 -0.8 192,963 + TX73_000900 0.38 -0.2 192,971 - TX73_000900 0.39 +2.6 192,972 - TX73_000900 0.39 -0.4 193,002 + TX73_000900 0.42 -0.8 193,007 - TX73_000900 0.43 -1.8 193,013 + TX73_000900 0.43 -0.4 193,022 - TX73_000900 0.44 -2.3 193,040 + TX73_000900 0.46 -0.1 193,046 + TX73_000900 0.47 +0.5 193,107 + TX73_000900 0.53 -1.8 193,115 - TX73_000900 0.54 +1.5 193,126 + TX73_000900 0.55 -1.6 193,133 - TX73_000900 0.56 -0.1 193,134 - TX73_000900 0.56 -0.0 193,154 - TX73_000900 0.58 +0.0 193,159 - TX73_000900 0.59 +0.3 193,171 + TX73_000900 0.60 -0.3 193,187 - TX73_000900 0.61 -0.0 193,195 - TX73_000900 0.62 -0.4 193,214 - TX73_000900 0.64 +0.2 193,232 + TX73_000900 0.66 -1.8 193,256 + TX73_000900 0.69 -1.3 193,264 - TX73_000900 0.70 +1.2 193,264 - TX73_000900 0.70 +0.2 193,273 + TX73_000900 0.71 -3.0 193,339 - TX73_000900 0.78 -2.1 193,375 + TX73_000900 0.81 +1.2 193,391 + TX73_000900 0.83 +0.8 193,399 - TX73_000900 0.84 -0.1 193,399 - TX73_000900 0.84 -1.3 193,435 - TX73_000900 0.88 -1.6 193,483 - -1.0 193,490 - -0.1 193,505 + -1.1 193,505 + -0.2 193,505 + -1.8 193,505 + -0.2 193,505 + -0.0 193,513 - -0.5 193,513 - -1.8 193,527 + -1.6 193,559 - +1.1 193,570 + -0.0 193,613 - TX73_000905 0.12 +0.6 193,615 - TX73_000905 0.13 +0.5 193,615 - TX73_000905 0.13 +0.8 193,615 - TX73_000905 0.13 +0.3 193,625 + TX73_000905 0.15 +0.9 193,625 + TX73_000905 0.15 -0.6 193,626 + TX73_000905 0.15 +0.4 193,659 + TX73_000905 0.21 -0.0 193,681 - TX73_000905 0.25 +0.8 193,734 + TX73_000905 0.36 -0.1 193,758 - TX73_000905 0.40 +0.3 193,772 - TX73_000905 0.43 +0.5 193,774 + TX73_000905 0.43 -0.6 193,821 + TX73_000905 0.52 +0.3 193,822 - TX73_000905 0.52 +0.4 193,829 - TX73_000905 0.54 +0.2 193,866 + TX73_000905 0.61 +0.2 193,894 - TX73_000905 0.66 -0.2 193,894 - TX73_000905 0.66 -0.3 193,981 - TX73_000905 0.83 +0.8 194,020 + +0.1 194,024 - +1.0 194,039 - +0.6 194,046 - -0.6 194,046 - +0.3 194,046 - -0.2 194,048 + +0.4 194,048 + +0.1 194,048 + +0.0 194,048 + -0.1 194,056 - +0.1 194,056 - +1.0 194,058 + -0.9 194,058 + -0.0 194,058 + +0.4 194,066 - -0.1 194,066 - -0.5 194,066 - -0.1 194,066 - +0.0 194,066 - +0.3 194,066 - -0.5 194,066 - +0.3 194,071 - -0.2 194,107 + -0.2 194,107 + +1.3 194,107 + -0.6 194,107 + +0.9 194,115 - +0.1 194,115 - +0.3 194,120 + -1.6 194,186 - +0.1 194,204 + +0.4 194,216 - +0.4 194,231 + +0.2 194,231 + +1.2 194,234 + +0.1 194,239 + +0.2 194,239 - +0.7 194,239 - +0.7 194,261 + -1.2 194,266 - -0.3 194,268 + +0.2 194,276 - +0.9 194,290 + +0.7 194,298 - TX73_000910 0.11 -0.2 194,298 - TX73_000910 0.11 -0.6 194,298 - TX73_000910 0.11 +1.8 194,298 - TX73_000910 0.11 +0.1 194,388 + TX73_000910 0.33 +0.4 194,442 - TX73_000910 0.46 +0.0
Or see this region's nucleotide sequence