Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011115

Experiment: starvation expt 2; 14 days; outgrowth in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation expt 2; 14 days; outgrowth in CAAc
2,425,873	+		TX73_011110	0.47	-0.6
2,425,873	+		TX73_011110	0.47	-0.0
2,425,873	+		TX73_011110	0.47	+0.6
2,425,932	+		TX73_011110	0.51	+0.7
2,425,940	+		TX73_011110	0.52	-0.4
2,425,965	+		TX73_011110	0.54	-0.8
2,425,966	-		TX73_011110	0.54	+0.7
2,425,966	-		TX73_011110	0.54	-0.2
2,425,973	-		TX73_011110	0.55	-0.1
2,425,989	+		TX73_011110	0.56	-0.1
2,425,992	-		TX73_011110	0.56	-0.5
2,426,037	+		TX73_011110	0.60	-0.1
2,426,130	+		TX73_011110	0.67	+0.8
2,426,177	+		TX73_011110	0.71	+0.6
2,426,234	+		TX73_011110	0.75	-0.5
2,426,257	+		TX73_011110	0.77	+0.8
2,426,267	+		TX73_011110	0.78	+0.1
2,426,273	-		TX73_011110	0.79	-0.1
2,426,317	+		TX73_011110	0.82	+0.4
2,426,317	+		TX73_011110	0.82	-0.1
2,426,320	-		TX73_011110	0.82	-0.2
2,426,320	-		TX73_011110	0.82	+2.0
2,426,353	+		TX73_011110	0.85	-0.4
2,426,400	-		TX73_011110	0.89	-0.6
2,426,479	-				+0.6
2,426,505	+				+0.3
2,426,522	+				+0.7
2,426,528	+				-0.9
2,426,534	+				-0.8
2,426,542	-				-0.0
2,426,552	-				+1.7
2,426,562	-				+0.1
2,426,588	-				+0.8
2,426,638	+				+0.4
2,426,661	-				-0.6
2,426,732	+				-0.8
2,426,776	+				+0.3
2,426,777	+				+0.4
2,426,784	-				+0.3
2,426,784	-				+1.0
2,426,794	+				-0.1
2,426,795	+				+0.2
2,426,803	+				+0.3
2,426,862	+				-0.3
2,426,862	+				-1.2
2,426,862	+				-0.2
2,426,862	+				-0.1
2,426,887	+				-0.5
2,426,888	-				-0.2
2,426,935	+				-0.7
2,426,935	+				+0.8
2,426,935	+				-0.1
2,426,936	-				-0.2
2,426,936	-				-0.6
2,427,002	-				-0.7
2,427,004	-				-0.0
2,427,020	-				+0.5
2,427,020	-				-0.9
2,427,037	+		TX73_011115	0.10	+0.6
2,427,096	+		TX73_011115	0.13	+0.4
2,427,096	+		TX73_011115	0.13	+0.3
2,427,249	+		TX73_011115	0.22	+0.3
2,427,257	-		TX73_011115	0.23	+0.2
2,427,299	+		TX73_011115	0.25	+0.1
2,427,299	+		TX73_011115	0.25	+0.0
2,427,299	+		TX73_011115	0.25	+0.4
2,427,307	-		TX73_011115	0.26	+0.4
2,427,307	-		TX73_011115	0.26	-0.8
2,427,326	-		TX73_011115	0.27	-0.2
2,427,344	+		TX73_011115	0.28	-0.3
2,427,373	-		TX73_011115	0.30	-0.9
2,427,451	+		TX73_011115	0.34	+1.4
2,427,452	-		TX73_011115	0.34	-0.1
2,427,453	+		TX73_011115	0.34	-1.7
2,427,461	-		TX73_011115	0.35	-1.5
2,427,463	+		TX73_011115	0.35	-0.1
2,427,469	+		TX73_011115	0.35	-0.6
2,427,477	-		TX73_011115	0.36	+1.0
2,427,507	+		TX73_011115	0.38	-0.3
2,427,507	+		TX73_011115	0.38	+0.7
2,427,556	+		TX73_011115	0.40	-0.2
2,427,583	+		TX73_011115	0.42	-0.4
2,427,588	+		TX73_011115	0.42	-0.5
2,427,594	+		TX73_011115	0.43	-1.3
2,427,594	+		TX73_011115	0.43	+0.9
2,427,594	+		TX73_011115	0.43	+0.5
2,427,596	-		TX73_011115	0.43	-0.2
2,427,596	-		TX73_011115	0.43	-0.7
2,427,596	-		TX73_011115	0.43	+0.5
2,427,596	-		TX73_011115	0.43	+1.0
2,427,597	-		TX73_011115	0.43	-0.0
2,427,602	-		TX73_011115	0.43	+0.1
2,427,602	-		TX73_011115	0.43	-0.1
2,427,644	-		TX73_011115	0.46	+0.3
2,427,655	+		TX73_011115	0.46	+1.2
2,427,663	-		TX73_011115	0.47	-1.6
2,427,713	+		TX73_011115	0.50	+0.2
2,427,728	+		TX73_011115	0.50	+0.3
2,427,758	+		TX73_011115	0.52	-1.3
2,427,766	-		TX73_011115	0.53	+0.4
2,427,782	+		TX73_011115	0.54	+0.2
2,427,790	-		TX73_011115	0.54	+1.8
2,427,790	-		TX73_011115	0.54	+0.9
2,427,790	-		TX73_011115	0.54	+2.7
2,427,889	-		TX73_011115	0.60	-0.2
2,427,894	-		TX73_011115	0.60	+0.4
2,427,914	-		TX73_011115	0.61	-0.7
2,427,914	-		TX73_011115	0.61	+0.2
2,427,924	+		TX73_011115	0.62	+0.4
2,427,924	+		TX73_011115	0.62	-1.0
2,427,924	+		TX73_011115	0.62	-0.8
2,427,924	+		TX73_011115	0.62	-0.1
2,427,932	-		TX73_011115	0.62	-1.0
2,427,954	-		TX73_011115	0.64	+0.8
2,427,997	-		TX73_011115	0.66	-0.3
2,428,032	+		TX73_011115	0.68	+0.5
2,428,040	-		TX73_011115	0.69	-1.1
2,428,065	+		TX73_011115	0.70	-1.0
2,428,071	-		TX73_011115	0.71	-0.5
2,428,073	-		TX73_011115	0.71	-0.4
2,428,097	+		TX73_011115	0.72	+0.5
2,428,107	-		TX73_011115	0.73	+1.1
2,428,109	-		TX73_011115	0.73	-0.3
2,428,167	+		TX73_011115	0.76	-0.6
2,428,175	-		TX73_011115	0.77	+0.9
2,428,175	-		TX73_011115	0.77	+0.1
2,428,175	-		TX73_011115	0.77	+0.0
2,428,175	-		TX73_011115	0.77	+0.1
2,428,196	+		TX73_011115	0.78	+0.7
2,428,200	+		TX73_011115	0.78	-0.5
2,428,225	+		TX73_011115	0.80	-0.3
2,428,225	+		TX73_011115	0.80	-0.1
2,428,233	-		TX73_011115	0.80	-0.3
2,428,246	+		TX73_011115	0.81	-1.2
2,428,247	+		TX73_011115	0.81	+0.5
2,428,247	+		TX73_011115	0.81	+0.7
2,428,250	-		TX73_011115	0.81	+0.6
2,428,274	-		TX73_011115	0.82	-0.3
2,428,274	-		TX73_011115	0.82	-0.3
2,428,316	+		TX73_011115	0.85	-0.1
2,428,317	+		TX73_011115	0.85	-0.1
2,428,321	+		TX73_011115	0.85	+0.4
2,428,326	+		TX73_011115	0.86	-0.2
2,428,339	-		TX73_011115	0.86	+0.2
2,428,357	-		TX73_011115	0.87	-0.5
2,428,364	-		TX73_011115	0.88	+0.4
2,428,365	-		TX73_011115	0.88	+0.1
2,428,379	+		TX73_011115	0.89	+0.4
2,428,379	+		TX73_011115	0.89	+0.7
2,428,379	+		TX73_011115	0.89	+0.1
2,428,387	-		TX73_011115	0.89	-0.6
2,428,437	+				+1.3
2,428,437	+				-2.4
2,428,445	-				-0.1
2,428,462	+				+0.2
2,428,462	+				-1.2
2,428,487	+				+0.7
2,428,492	-				+0.4
2,428,492	-				-0.2
2,428,494	+				+1.4
2,428,505	+				-0.3
2,428,505	-				+0.6
2,428,518	-				+1.4
2,428,521	-				-0.8
2,428,522	+				-0.5
2,428,560	+				+0.9
2,428,608	-		TX73_011120	0.11	-0.2
2,428,624	-		TX73_011120	0.17	-0.7
2,428,659	+		TX73_011120	0.29	-0.2
2,428,675	-		TX73_011120	0.35	-0.2
2,428,719	-		TX73_011120	0.51	+0.8
2,428,721	+		TX73_011120	0.52	-0.6
2,428,729	-		TX73_011120	0.54	-1.3
2,428,729	-		TX73_011120	0.54	-1.6
2,428,734	-		TX73_011120	0.56	-0.5
2,428,737	+		TX73_011120	0.57	+0.8
2,428,739	-		TX73_011120	0.58	+0.3
2,428,739	-		TX73_011120	0.58	+0.3
2,428,740	-		TX73_011120	0.58	-0.2
2,428,740	-		TX73_011120	0.58	+0.5
2,428,745	-		TX73_011120	0.60	+0.4
2,428,769	+		TX73_011120	0.69	-0.6
2,428,769	+		TX73_011120	0.69	-0.3
2,428,770	-		TX73_011120	0.69	-1.0
2,428,770	-		TX73_011120	0.69	-0.4
2,428,777	-		TX73_011120	0.72	+0.2
2,428,777	-		TX73_011120	0.72	+0.5
2,428,807	+		TX73_011120	0.82	-0.1
2,428,827	-		TX73_011120	0.90	+0.3
2,428,848	+				+0.7
2,428,890	-				-0.3
2,428,902	-				-0.6
2,428,909	-				+0.2
2,428,918	+				-1.9
2,428,926	-				+0.1
2,428,944	+				-0.8
2,428,954	-				+2.0
2,428,970	+				+0.4
2,428,980	+				+0.9
2,428,980	+				-0.1
2,428,987	-				-2.5
2,428,988	-				-0.4
2,428,990	+				+0.2
2,428,998	-				+0.1
2,428,998	-				-0.4
2,429,005	+				-0.1
2,429,005	+				-0.8
2,429,005	+				-0.4
2,429,005	+				-0.0
2,429,005	+				+0.1
2,429,005	+				-0.6
2,429,005	+				-1.0
2,429,005	+				-0.4
2,429,005	+				+1.2
2,429,005	+				+1.4
2,429,013	-				-0.4
2,429,013	-				+0.2
2,429,013	-				-0.3
2,429,013	-				+0.1
2,429,027	-				+0.2
2,429,029	+				-0.1
2,429,108	+				-0.1
2,429,179	+				-0.1
2,429,184	+				+1.1
2,429,187	-				-0.2
2,429,187	-				+0.7
2,429,187	-				+0.1
2,429,187	-				-1.3
2,429,187	-				+0.8
2,429,201	-				-1.0
2,429,207	+				-1.5
2,429,215	-				-0.1
2,429,218	+				+0.4
2,429,253	+				-0.1
2,429,297	-				-1.2
2,429,300	-				+0.8
2,429,306	+				-0.7
2,429,347	-				-1.8
2,429,349	+				-0.8
2,429,366	+				-1.2
2,429,374	+		TX73_011125	0.10	+0.4
2,429,382	-		TX73_011125	0.11	-1.0
2,429,387	-		TX73_011125	0.11	+0.1
2,429,400	+		TX73_011125	0.12	-0.9
2,429,424	-		TX73_011125	0.14	-1.8
2,429,444	-		TX73_011125	0.16	-1.1
2,429,453	-		TX73_011125	0.17	+0.4
2,429,462	+		TX73_011125	0.17	-0.8
2,429,486	-		TX73_011125	0.19	-0.4
2,429,562	+		TX73_011125	0.26	-1.3
2,429,568	-		TX73_011125	0.26	-0.8