Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001585

Experiment: starvation expt 1; 14 days; outgrowth in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001580 and TX73_001585 are separated by 5 nucleotidesTX73_001585 and TX73_001590 are separated by 335 nucleotides TX73_001580: TX73_001580 - murein transglycosylase A, at 333,577 to 335,070 _001580 TX73_001585: TX73_001585 - Smr/MutS family protein, at 335,076 to 335,660 _001585 TX73_001590: TX73_001590 - ATP-dependent protease ATPase subunit HslU, at 335,996 to 337,297 _001590 Position (kb) 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 334.096 kb on + strand, within TX73_001580at 334.104 kb on - strand, within TX73_001580at 334.117 kb on + strand, within TX73_001580at 334.125 kb on - strand, within TX73_001580at 334.130 kb on + strand, within TX73_001580at 334.130 kb on + strand, within TX73_001580at 334.159 kb on - strand, within TX73_001580at 334.159 kb on - strand, within TX73_001580at 334.171 kb on + strand, within TX73_001580at 334.173 kb on + strand, within TX73_001580at 334.184 kb on + strand, within TX73_001580at 334.217 kb on - strand, within TX73_001580at 334.217 kb on - strand, within TX73_001580at 334.222 kb on - strand, within TX73_001580at 334.248 kb on - strand, within TX73_001580at 334.296 kb on - strand, within TX73_001580at 334.311 kb on - strand, within TX73_001580at 334.311 kb on - strand, within TX73_001580at 334.311 kb on - strand, within TX73_001580at 334.320 kb on + strand, within TX73_001580at 334.328 kb on - strand, within TX73_001580at 334.381 kb on + strand, within TX73_001580at 334.395 kb on + strand, within TX73_001580at 334.398 kb on - strand, within TX73_001580at 334.416 kb on + strand, within TX73_001580at 334.418 kb on + strand, within TX73_001580at 334.424 kb on - strand, within TX73_001580at 334.441 kb on - strand, within TX73_001580at 334.441 kb on - strand, within TX73_001580at 334.462 kb on - strand, within TX73_001580at 334.478 kb on + strand, within TX73_001580at 334.486 kb on - strand, within TX73_001580at 334.499 kb on + strand, within TX73_001580at 334.499 kb on + strand, within TX73_001580at 334.515 kb on - strand, within TX73_001580at 334.537 kb on - strand, within TX73_001580at 334.582 kb on + strand, within TX73_001580at 334.589 kb on + strand, within TX73_001580at 334.589 kb on - strand, within TX73_001580at 334.600 kb on + strand, within TX73_001580at 334.601 kb on + strand, within TX73_001580at 334.601 kb on + strand, within TX73_001580at 334.601 kb on + strand, within TX73_001580at 334.601 kb on + strand, within TX73_001580at 334.601 kb on + strand, within TX73_001580at 334.608 kb on - strand, within TX73_001580at 334.625 kb on + strand, within TX73_001580at 334.629 kb on + strand, within TX73_001580at 334.630 kb on + strand, within TX73_001580at 334.637 kb on - strand, within TX73_001580at 334.639 kb on + strand, within TX73_001580at 334.641 kb on - strand, within TX73_001580at 334.723 kb on + strand, within TX73_001580at 334.751 kb on + strand, within TX73_001580at 334.759 kb on - strand, within TX73_001580at 334.769 kb on - strand, within TX73_001580at 334.773 kb on - strand, within TX73_001580at 334.784 kb on + strand, within TX73_001580at 334.792 kb on - strand, within TX73_001580at 334.792 kb on - strand, within TX73_001580at 334.799 kb on - strand, within TX73_001580at 334.801 kb on + strand, within TX73_001580at 334.852 kb on + strand, within TX73_001580at 334.852 kb on + strand, within TX73_001580at 334.853 kb on - strand, within TX73_001580at 334.861 kb on - strand, within TX73_001580at 334.861 kb on - strand, within TX73_001580at 334.861 kb on - strand, within TX73_001580at 334.878 kb on + strand, within TX73_001580at 334.884 kb on + strand, within TX73_001580at 334.892 kb on - strand, within TX73_001580at 334.923 kb on - strandat 334.931 kb on - strandat 334.951 kb on + strandat 334.967 kb on + strandat 334.970 kb on - strandat 334.970 kb on - strandat 334.980 kb on - strandat 334.983 kb on + strandat 334.989 kb on - strandat 335.011 kb on + strandat 335.043 kb on + strandat 335.046 kb on - strandat 335.050 kb on - strandat 335.052 kb on + strandat 335.054 kb on + strandat 335.077 kb on - strandat 335.122 kb on + strandat 335.136 kb on - strand, within TX73_001585at 335.137 kb on + strand, within TX73_001585at 335.151 kb on + strand, within TX73_001585at 335.151 kb on + strand, within TX73_001585at 335.153 kb on + strand, within TX73_001585at 335.153 kb on + strand, within TX73_001585at 335.169 kb on - strand, within TX73_001585at 335.174 kb on + strand, within TX73_001585at 335.174 kb on + strand, within TX73_001585at 335.182 kb on - strand, within TX73_001585at 335.233 kb on + strand, within TX73_001585at 335.234 kb on - strand, within TX73_001585at 335.234 kb on - strand, within TX73_001585at 335.241 kb on - strand, within TX73_001585at 335.287 kb on - strand, within TX73_001585at 335.303 kb on + strand, within TX73_001585at 335.311 kb on - strand, within TX73_001585at 335.327 kb on - strand, within TX73_001585at 335.332 kb on + strand, within TX73_001585at 335.368 kb on + strand, within TX73_001585at 335.376 kb on - strand, within TX73_001585at 335.399 kb on + strand, within TX73_001585at 335.404 kb on + strand, within TX73_001585at 335.404 kb on + strand, within TX73_001585at 335.412 kb on - strand, within TX73_001585at 335.435 kb on + strand, within TX73_001585at 335.435 kb on + strand, within TX73_001585at 335.440 kb on + strand, within TX73_001585at 335.443 kb on - strand, within TX73_001585at 335.443 kb on - strand, within TX73_001585at 335.458 kb on + strand, within TX73_001585at 335.473 kb on + strand, within TX73_001585at 335.476 kb on - strand, within TX73_001585at 335.491 kb on - strand, within TX73_001585at 335.498 kb on + strand, within TX73_001585at 335.506 kb on - strand, within TX73_001585at 335.514 kb on + strand, within TX73_001585at 335.541 kb on + strand, within TX73_001585at 335.598 kb on + strand, within TX73_001585at 335.598 kb on + strand, within TX73_001585at 335.606 kb on - strandat 335.740 kb on + strandat 335.779 kb on + strandat 335.816 kb on - strandat 335.817 kb on - strandat 335.919 kb on - strandat 335.984 kb on + strandat 335.989 kb on - strandat 336.001 kb on + strandat 336.058 kb on + strandat 336.058 kb on + strandat 336.084 kb on + strandat 336.123 kb on - strandat 336.136 kb on - strand, within TX73_001590at 336.143 kb on + strand, within TX73_001590at 336.161 kb on - strand, within TX73_001590at 336.254 kb on - strand, within TX73_001590at 336.270 kb on - strand, within TX73_001590at 336.281 kb on - strand, within TX73_001590at 336.291 kb on - strand, within TX73_001590at 336.291 kb on - strand, within TX73_001590at 336.293 kb on + strand, within TX73_001590at 336.302 kb on - strand, within TX73_001590at 336.302 kb on - strand, within TX73_001590at 336.328 kb on - strand, within TX73_001590at 336.376 kb on + strand, within TX73_001590at 336.393 kb on - strand, within TX73_001590at 336.421 kb on + strand, within TX73_001590at 336.425 kb on - strand, within TX73_001590at 336.440 kb on - strand, within TX73_001590at 336.449 kb on - strand, within TX73_001590at 336.449 kb on - strand, within TX73_001590at 336.476 kb on - strand, within TX73_001590at 336.487 kb on - strand, within TX73_001590at 336.514 kb on - strand, within TX73_001590at 336.519 kb on - strand, within TX73_001590at 336.541 kb on + strand, within TX73_001590at 336.566 kb on + strand, within TX73_001590at 336.587 kb on - strand, within TX73_001590at 336.603 kb on + strand, within TX73_001590at 336.616 kb on + strand, within TX73_001590at 336.621 kb on + strand, within TX73_001590at 336.621 kb on + strand, within TX73_001590at 336.629 kb on - strand, within TX73_001590at 336.629 kb on - strand, within TX73_001590at 336.650 kb on + strand, within TX73_001590at 336.658 kb on - strand, within TX73_001590at 336.660 kb on + strand, within TX73_001590

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation expt 1; 14 days; outgrowth in CAAc
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334,096 + TX73_001580 0.35 -0.0
334,104 - TX73_001580 0.35 -0.7
334,117 + TX73_001580 0.36 -0.1
334,125 - TX73_001580 0.37 -1.7
334,130 + TX73_001580 0.37 +0.6
334,130 + TX73_001580 0.37 -0.9
334,159 - TX73_001580 0.39 +0.0
334,159 - TX73_001580 0.39 -1.8
334,171 + TX73_001580 0.40 +0.4
334,173 + TX73_001580 0.40 -0.7
334,184 + TX73_001580 0.41 +0.1
334,217 - TX73_001580 0.43 -0.7
334,217 - TX73_001580 0.43 -1.0
334,222 - TX73_001580 0.43 -0.0
334,248 - TX73_001580 0.45 +0.4
334,296 - TX73_001580 0.48 +1.4
334,311 - TX73_001580 0.49 -1.3
334,311 - TX73_001580 0.49 +0.7
334,311 - TX73_001580 0.49 +1.1
334,320 + TX73_001580 0.50 +0.3
334,328 - TX73_001580 0.50 +0.6
334,381 + TX73_001580 0.54 +0.4
334,395 + TX73_001580 0.55 -0.0
334,398 - TX73_001580 0.55 -0.4
334,416 + TX73_001580 0.56 +1.1
334,418 + TX73_001580 0.56 +0.6
334,424 - TX73_001580 0.57 -1.1
334,441 - TX73_001580 0.58 -0.6
334,441 - TX73_001580 0.58 +0.6
334,462 - TX73_001580 0.59 -0.3
334,478 + TX73_001580 0.60 +0.3
334,486 - TX73_001580 0.61 -0.2
334,499 + TX73_001580 0.62 +0.2
334,499 + TX73_001580 0.62 +0.3
334,515 - TX73_001580 0.63 -0.7
334,537 - TX73_001580 0.64 +0.4
334,582 + TX73_001580 0.67 +1.0
334,589 + TX73_001580 0.68 +0.1
334,589 - TX73_001580 0.68 -0.1
334,600 + TX73_001580 0.68 -0.3
334,601 + TX73_001580 0.69 +0.0
334,601 + TX73_001580 0.69 -0.9
334,601 + TX73_001580 0.69 +0.5
334,601 + TX73_001580 0.69 +0.2
334,601 + TX73_001580 0.69 +0.3
334,608 - TX73_001580 0.69 -1.2
334,625 + TX73_001580 0.70 -0.9
334,629 + TX73_001580 0.70 +0.5
334,630 + TX73_001580 0.70 +1.0
334,637 - TX73_001580 0.71 +0.1
334,639 + TX73_001580 0.71 -0.5
334,641 - TX73_001580 0.71 +0.1
334,723 + TX73_001580 0.77 -0.2
334,751 + TX73_001580 0.79 -1.5
334,759 - TX73_001580 0.79 +0.6
334,769 - TX73_001580 0.80 -0.6
334,773 - TX73_001580 0.80 +0.6
334,784 + TX73_001580 0.81 +0.4
334,792 - TX73_001580 0.81 -0.5
334,792 - TX73_001580 0.81 -0.4
334,799 - TX73_001580 0.82 +0.4
334,801 + TX73_001580 0.82 +0.5
334,852 + TX73_001580 0.85 +0.4
334,852 + TX73_001580 0.85 +0.9
334,853 - TX73_001580 0.85 -0.5
334,861 - TX73_001580 0.86 +0.4
334,861 - TX73_001580 0.86 +0.4
334,861 - TX73_001580 0.86 -0.2
334,878 + TX73_001580 0.87 +0.4
334,884 + TX73_001580 0.87 -0.1
334,892 - TX73_001580 0.88 -0.8
334,923 - +1.2
334,931 - +0.1
334,951 + -0.6
334,967 + +0.2
334,970 - +0.5
334,970 - +0.3
334,980 - +0.4
334,983 + +0.1
334,989 - -0.2
335,011 + -0.7
335,043 + +0.2
335,046 - +0.5
335,050 - +0.8
335,052 + +0.1
335,054 + -1.2
335,077 - +0.1
335,122 + +0.3
335,136 - TX73_001585 0.10 -1.7
335,137 + TX73_001585 0.10 -0.0
335,151 + TX73_001585 0.13 +0.5
335,151 + TX73_001585 0.13 -0.1
335,153 + TX73_001585 0.13 +1.0
335,153 + TX73_001585 0.13 -1.1
335,169 - TX73_001585 0.16 +0.6
335,174 + TX73_001585 0.17 -0.2
335,174 + TX73_001585 0.17 +1.5
335,182 - TX73_001585 0.18 +0.2
335,233 + TX73_001585 0.27 -1.3
335,234 - TX73_001585 0.27 -0.2
335,234 - TX73_001585 0.27 +0.0
335,241 - TX73_001585 0.28 -0.8
335,287 - TX73_001585 0.36 -0.0
335,303 + TX73_001585 0.39 -0.5
335,311 - TX73_001585 0.40 +0.5
335,327 - TX73_001585 0.43 -1.3
335,332 + TX73_001585 0.44 +0.6
335,368 + TX73_001585 0.50 +0.2
335,376 - TX73_001585 0.51 -0.4
335,399 + TX73_001585 0.55 -1.6
335,404 + TX73_001585 0.56 -0.2
335,404 + TX73_001585 0.56 +0.5
335,412 - TX73_001585 0.57 -0.2
335,435 + TX73_001585 0.61 +0.2
335,435 + TX73_001585 0.61 -2.7
335,440 + TX73_001585 0.62 +0.7
335,443 - TX73_001585 0.63 -0.4
335,443 - TX73_001585 0.63 +0.2
335,458 + TX73_001585 0.65 -0.6
335,473 + TX73_001585 0.68 +0.1
335,476 - TX73_001585 0.68 -0.1
335,491 - TX73_001585 0.71 +2.1
335,498 + TX73_001585 0.72 -1.5
335,506 - TX73_001585 0.74 +0.3
335,514 + TX73_001585 0.75 +1.0
335,541 + TX73_001585 0.79 -1.0
335,598 + TX73_001585 0.89 +0.6
335,598 + TX73_001585 0.89 +0.7
335,606 - +0.2
335,740 + +0.6
335,779 + -0.2
335,816 - +1.5
335,817 - -0.3
335,919 - +0.4
335,984 + +2.3
335,989 - -0.6
336,001 + +1.0
336,058 + -1.7
336,058 + +0.3
336,084 + -1.0
336,123 - -1.5
336,136 - TX73_001590 0.11 -0.8
336,143 + TX73_001590 0.11 +1.7
336,161 - TX73_001590 0.13 -0.2
336,254 - TX73_001590 0.20 -1.9
336,270 - TX73_001590 0.21 +0.4
336,281 - TX73_001590 0.22 +0.0
336,291 - TX73_001590 0.23 -1.5
336,291 - TX73_001590 0.23 +0.5
336,293 + TX73_001590 0.23 +0.1
336,302 - TX73_001590 0.24 -1.5
336,302 - TX73_001590 0.24 -2.1
336,328 - TX73_001590 0.25 -1.0
336,376 + TX73_001590 0.29 +0.0
336,393 - TX73_001590 0.30 -0.5
336,421 + TX73_001590 0.33 +2.6
336,425 - TX73_001590 0.33 +0.0
336,440 - TX73_001590 0.34 +1.2
336,449 - TX73_001590 0.35 -0.7
336,449 - TX73_001590 0.35 +1.4
336,476 - TX73_001590 0.37 -1.6
336,487 - TX73_001590 0.38 -0.2
336,514 - TX73_001590 0.40 -1.0
336,519 - TX73_001590 0.40 -1.0
336,541 + TX73_001590 0.42 -1.0
336,566 + TX73_001590 0.44 -0.6
336,587 - TX73_001590 0.45 -0.1
336,603 + TX73_001590 0.47 -0.6
336,616 + TX73_001590 0.48 +0.9
336,621 + TX73_001590 0.48 -0.5
336,621 + TX73_001590 0.48 +1.2
336,629 - TX73_001590 0.49 -0.8
336,629 - TX73_001590 0.49 +0.5
336,650 + TX73_001590 0.50 +1.4
336,658 - TX73_001590 0.51 -1.1
336,660 + TX73_001590 0.51 +0.0

Or see this region's nucleotide sequence