Experiment: starvation expt 1; 14 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000885 and TX73_000890 are separated by 38 nucleotides TX73_000890 and TX73_000895 are separated by 136 nucleotides TX73_000895 and TX73_000900 are separated by 271 nucleotides
TX73_000885: TX73_000885 - divergent polysaccharide deacetylase family protein, at 189,342 to 190,580
_000885
TX73_000890: TX73_000890 - RNA pyrophosphohydrolase, at 190,619 to 191,125
_000890
TX73_000895: TX73_000895 - glycosyltransferase family 1 protein, at 191,262 to 192,332
_000895
TX73_000900: TX73_000900 - SDR family oxidoreductase, at 192,604 to 193,551
_000900
Position (kb) 191
192
193 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 190.262 kb on - strand, within TX73_000885 at 190.274 kb on + strand, within TX73_000885 at 190.287 kb on - strand, within TX73_000885 at 190.298 kb on + strand, within TX73_000885 at 190.300 kb on + strand, within TX73_000885 at 190.305 kb on + strand, within TX73_000885 at 190.308 kb on - strand, within TX73_000885 at 190.327 kb on - strand, within TX73_000885 at 190.360 kb on + strand, within TX73_000885 at 190.367 kb on + strand, within TX73_000885 at 190.367 kb on + strand, within TX73_000885 at 190.406 kb on - strand, within TX73_000885 at 190.421 kb on + strand, within TX73_000885 at 190.421 kb on + strand, within TX73_000885 at 190.429 kb on - strand, within TX73_000885 at 190.429 kb on - strand, within TX73_000885 at 190.429 kb on - strand, within TX73_000885 at 190.440 kb on + strand, within TX73_000885 at 190.445 kb on + strand, within TX73_000885 at 190.445 kb on + strand, within TX73_000885 at 190.448 kb on - strand, within TX73_000885 at 190.448 kb on - strand, within TX73_000885 at 190.458 kb on + strand at 190.465 kb on - strand at 190.473 kb on - strand at 190.473 kb on - strand at 190.506 kb on + strand at 190.530 kb on - strand at 190.541 kb on - strand at 190.590 kb on + strand at 190.590 kb on + strand at 190.593 kb on - strand at 190.598 kb on - strand at 190.598 kb on - strand at 190.607 kb on - strand at 190.608 kb on + strand at 190.629 kb on + strand at 190.642 kb on - strand at 190.642 kb on - strand at 190.642 kb on - strand at 190.651 kb on - strand at 190.659 kb on + strand at 190.659 kb on + strand at 190.659 kb on + strand at 190.659 kb on + strand at 190.664 kb on + strand at 190.667 kb on - strand at 190.674 kb on + strand, within TX73_000890 at 190.682 kb on + strand, within TX73_000890 at 190.704 kb on + strand, within TX73_000890 at 190.738 kb on + strand, within TX73_000890 at 190.739 kb on - strand, within TX73_000890 at 190.773 kb on + strand, within TX73_000890 at 190.780 kb on + strand, within TX73_000890 at 190.780 kb on - strand, within TX73_000890 at 190.782 kb on + strand, within TX73_000890 at 190.788 kb on - strand, within TX73_000890 at 190.821 kb on + strand, within TX73_000890 at 190.821 kb on + strand, within TX73_000890 at 190.822 kb on + strand, within TX73_000890 at 190.828 kb on - strand, within TX73_000890 at 190.840 kb on - strand, within TX73_000890 at 190.850 kb on + strand, within TX73_000890 at 190.850 kb on + strand, within TX73_000890 at 190.872 kb on - strand, within TX73_000890 at 190.906 kb on - strand, within TX73_000890 at 190.907 kb on + strand, within TX73_000890 at 190.945 kb on + strand, within TX73_000890 at 190.969 kb on + strand, within TX73_000890 at 190.969 kb on + strand, within TX73_000890 at 191.035 kb on + strand, within TX73_000890 at 191.040 kb on + strand, within TX73_000890 at 191.051 kb on - strand, within TX73_000890 at 191.056 kb on - strand, within TX73_000890 at 191.056 kb on - strand, within TX73_000890 at 191.075 kb on + strand at 191.075 kb on + strand at 191.075 kb on + strand at 191.075 kb on + strand at 191.075 kb on + strand at 191.075 kb on + strand at 191.083 kb on - strand at 191.083 kb on - strand at 191.083 kb on - strand at 191.083 kb on - strand at 191.083 kb on - strand at 191.118 kb on - strand at 191.119 kb on + strand at 191.125 kb on + strand at 191.127 kb on - strand at 191.133 kb on - strand at 191.150 kb on - strand at 191.187 kb on + strand at 191.206 kb on + strand at 191.226 kb on + strand at 191.234 kb on - strand at 191.234 kb on - strand at 191.234 kb on - strand at 191.237 kb on + strand at 191.237 kb on + strand at 191.250 kb on - strand at 191.306 kb on + strand at 191.306 kb on + strand at 191.321 kb on - strand at 191.322 kb on + strand at 191.322 kb on + strand at 191.324 kb on - strand at 191.324 kb on - strand at 191.331 kb on - strand at 191.334 kb on + strand at 191.363 kb on + strand at 191.381 kb on + strand, within TX73_000895 at 191.404 kb on + strand, within TX73_000895 at 191.414 kb on + strand, within TX73_000895 at 191.430 kb on - strand, within TX73_000895 at 191.458 kb on + strand, within TX73_000895 at 191.463 kb on + strand, within TX73_000895 at 191.463 kb on + strand, within TX73_000895 at 191.471 kb on - strand, within TX73_000895 at 191.471 kb on - strand, within TX73_000895 at 191.471 kb on - strand, within TX73_000895 at 191.513 kb on - strand, within TX73_000895 at 191.523 kb on - strand, within TX73_000895 at 191.523 kb on - strand, within TX73_000895 at 191.540 kb on - strand, within TX73_000895 at 191.585 kb on + strand, within TX73_000895 at 191.591 kb on + strand, within TX73_000895 at 191.596 kb on + strand, within TX73_000895 at 191.596 kb on + strand, within TX73_000895 at 191.603 kb on - strand, within TX73_000895 at 191.604 kb on - strand, within TX73_000895 at 191.604 kb on - strand, within TX73_000895 at 191.604 kb on - strand, within TX73_000895 at 191.650 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.656 kb on + strand, within TX73_000895 at 191.681 kb on - strand, within TX73_000895 at 191.744 kb on + strand, within TX73_000895 at 191.790 kb on - strand, within TX73_000895 at 191.792 kb on - strand, within TX73_000895 at 191.795 kb on - strand, within TX73_000895 at 191.861 kb on - strand, within TX73_000895 at 191.867 kb on - strand, within TX73_000895 at 191.871 kb on - strand, within TX73_000895 at 191.902 kb on + strand, within TX73_000895 at 191.908 kb on + strand, within TX73_000895 at 191.910 kb on - strand, within TX73_000895 at 191.910 kb on - strand, within TX73_000895 at 191.922 kb on - strand, within TX73_000895 at 191.928 kb on - strand, within TX73_000895 at 191.928 kb on - strand, within TX73_000895 at 191.928 kb on - strand, within TX73_000895 at 191.936 kb on + strand, within TX73_000895 at 191.953 kb on + strand, within TX73_000895 at 191.970 kb on + strand, within TX73_000895 at 191.970 kb on + strand, within TX73_000895 at 191.999 kb on + strand, within TX73_000895 at 192.046 kb on + strand, within TX73_000895 at 192.052 kb on + strand, within TX73_000895 at 192.062 kb on + strand, within TX73_000895 at 192.062 kb on + strand, within TX73_000895 at 192.062 kb on + strand, within TX73_000895 at 192.064 kb on + strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.072 kb on - strand, within TX73_000895 at 192.118 kb on + strand, within TX73_000895 at 192.128 kb on + strand, within TX73_000895 at 192.135 kb on + strand, within TX73_000895 at 192.136 kb on - strand, within TX73_000895 at 192.172 kb on - strand, within TX73_000895 at 192.175 kb on + strand, within TX73_000895 at 192.188 kb on - strand, within TX73_000895 at 192.195 kb on + strand, within TX73_000895 at 192.196 kb on + strand, within TX73_000895 at 192.217 kb on + strand, within TX73_000895 at 192.224 kb on + strand, within TX73_000895 at 192.254 kb on + strand at 192.254 kb on + strand at 192.254 kb on + strand at 192.259 kb on + strand at 192.262 kb on - strand at 192.262 kb on - strand at 192.262 kb on - strand at 192.262 kb on - strand at 192.269 kb on + strand at 192.289 kb on + strand at 192.290 kb on + strand at 192.313 kb on - strand at 192.313 kb on - strand at 192.315 kb on + strand at 192.328 kb on + strand at 192.336 kb on - strand at 192.346 kb on - strand at 192.395 kb on + strand at 192.403 kb on - strand at 192.406 kb on + strand at 192.412 kb on + strand at 192.414 kb on - strand at 192.414 kb on - strand at 192.414 kb on - strand at 192.420 kb on - strand at 192.474 kb on + strand at 192.518 kb on + strand at 192.563 kb on + strand at 192.563 kb on + strand at 192.563 kb on + strand at 192.563 kb on + strand at 192.571 kb on - strand at 192.571 kb on - strand at 192.580 kb on - strand at 192.583 kb on + strand at 192.584 kb on + strand at 192.584 kb on + strand at 192.587 kb on - strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.589 kb on + strand at 192.592 kb on - strand at 192.594 kb on + strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.597 kb on - strand at 192.615 kb on - strand at 192.653 kb on + strand at 192.661 kb on - strand at 192.661 kb on - strand at 192.661 kb on - strand at 192.673 kb on - strand at 192.686 kb on + strand at 192.754 kb on + strand, within TX73_000900 at 192.755 kb on - strand, within TX73_000900 at 192.769 kb on - strand, within TX73_000900 at 192.842 kb on + strand, within TX73_000900 at 192.844 kb on + strand, within TX73_000900 at 192.850 kb on - strand, within TX73_000900 at 192.863 kb on + strand, within TX73_000900 at 192.863 kb on + strand, within TX73_000900 at 192.863 kb on + strand, within TX73_000900 at 192.871 kb on - strand, within TX73_000900 at 192.885 kb on - strand, within TX73_000900 at 192.915 kb on - strand, within TX73_000900 at 192.926 kb on - strand, within TX73_000900 at 192.949 kb on + strand, within TX73_000900 at 192.949 kb on + strand, within TX73_000900 at 192.963 kb on + strand, within TX73_000900 at 192.971 kb on - strand, within TX73_000900 at 192.972 kb on - strand, within TX73_000900 at 193.002 kb on + strand, within TX73_000900 at 193.007 kb on - strand, within TX73_000900 at 193.013 kb on + strand, within TX73_000900 at 193.022 kb on - strand, within TX73_000900 at 193.040 kb on + strand, within TX73_000900 at 193.046 kb on + strand, within TX73_000900 at 193.107 kb on + strand, within TX73_000900 at 193.115 kb on - strand, within TX73_000900 at 193.126 kb on + strand, within TX73_000900 at 193.133 kb on - strand, within TX73_000900 at 193.134 kb on - strand, within TX73_000900 at 193.154 kb on - strand, within TX73_000900 at 193.159 kb on - strand, within TX73_000900 at 193.171 kb on + strand, within TX73_000900 at 193.187 kb on - strand, within TX73_000900 at 193.195 kb on - strand, within TX73_000900 at 193.214 kb on - strand, within TX73_000900 at 193.232 kb on + strand, within TX73_000900 at 193.256 kb on + strand, within TX73_000900 at 193.264 kb on - strand, within TX73_000900 at 193.264 kb on - strand, within TX73_000900 at 193.273 kb on + strand, within TX73_000900
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 1; 14 days; outgrowth in CAAc remove 190,262 - TX73_000885 0.74 +0.7 190,274 + TX73_000885 0.75 -0.0 190,287 - TX73_000885 0.76 -0.3 190,298 + TX73_000885 0.77 +1.1 190,300 + TX73_000885 0.77 -0.4 190,305 + TX73_000885 0.78 +0.6 190,308 - TX73_000885 0.78 +0.8 190,327 - TX73_000885 0.79 -0.1 190,360 + TX73_000885 0.82 +2.4 190,367 + TX73_000885 0.83 +0.1 190,367 + TX73_000885 0.83 +0.2 190,406 - TX73_000885 0.86 +0.1 190,421 + TX73_000885 0.87 -0.5 190,421 + TX73_000885 0.87 -0.9 190,429 - TX73_000885 0.88 +0.6 190,429 - TX73_000885 0.88 +1.0 190,429 - TX73_000885 0.88 +0.0 190,440 + TX73_000885 0.89 +0.9 190,445 + TX73_000885 0.89 +0.7 190,445 + TX73_000885 0.89 -0.2 190,448 - TX73_000885 0.89 +0.5 190,448 - TX73_000885 0.89 +0.9 190,458 + +1.0 190,465 - +2.1 190,473 - +0.6 190,473 - +0.2 190,506 + +0.1 190,530 - +0.7 190,541 - -0.5 190,590 + +0.5 190,590 + +1.4 190,593 - +1.8 190,598 - +0.5 190,598 - +0.7 190,607 - +0.4 190,608 + -0.3 190,629 + +0.5 190,642 - +0.3 190,642 - +1.3 190,642 - +0.8 190,651 - +1.1 190,659 + +1.2 190,659 + +1.4 190,659 + +1.6 190,659 + +0.4 190,664 + -0.2 190,667 - +0.3 190,674 + TX73_000890 0.11 -0.4 190,682 + TX73_000890 0.12 +0.2 190,704 + TX73_000890 0.17 +2.0 190,738 + TX73_000890 0.23 +2.4 190,739 - TX73_000890 0.24 +0.9 190,773 + TX73_000890 0.30 +0.7 190,780 + TX73_000890 0.32 +0.5 190,780 - TX73_000890 0.32 +1.7 190,782 + TX73_000890 0.32 +1.5 190,788 - TX73_000890 0.33 +1.3 190,821 + TX73_000890 0.40 +0.7 190,821 + TX73_000890 0.40 +0.2 190,822 + TX73_000890 0.40 +2.0 190,828 - TX73_000890 0.41 +1.2 190,840 - TX73_000890 0.44 +0.8 190,850 + TX73_000890 0.46 +0.9 190,850 + TX73_000890 0.46 +1.1 190,872 - TX73_000890 0.50 +0.8 190,906 - TX73_000890 0.57 +1.3 190,907 + TX73_000890 0.57 +1.0 190,945 + TX73_000890 0.64 +0.9 190,969 + TX73_000890 0.69 +0.4 190,969 + TX73_000890 0.69 -0.2 191,035 + TX73_000890 0.82 +1.5 191,040 + TX73_000890 0.83 -0.9 191,051 - TX73_000890 0.85 +1.0 191,056 - TX73_000890 0.86 -0.3 191,056 - TX73_000890 0.86 +1.1 191,075 + +0.7 191,075 + +0.6 191,075 + +1.9 191,075 + +0.8 191,075 + +0.4 191,075 + +0.4 191,083 - -0.2 191,083 - +0.5 191,083 - +0.8 191,083 - +0.8 191,083 - +0.4 191,118 - -0.3 191,119 + -0.2 191,125 + +0.6 191,127 - -0.4 191,133 - +0.8 191,150 - +0.2 191,187 + -0.1 191,206 + -0.2 191,226 + +0.4 191,234 - +0.3 191,234 - -0.8 191,234 - +0.8 191,237 + -0.5 191,237 + +1.3 191,250 - +0.5 191,306 + -0.0 191,306 + +0.6 191,321 - -1.1 191,322 + -0.9 191,322 + +0.2 191,324 - +1.7 191,324 - +0.1 191,331 - +0.4 191,334 + -1.4 191,363 + +0.4 191,381 + TX73_000895 0.11 -1.9 191,404 + TX73_000895 0.13 -0.3 191,414 + TX73_000895 0.14 -1.2 191,430 - TX73_000895 0.16 +0.8 191,458 + TX73_000895 0.18 -1.1 191,463 + TX73_000895 0.19 +0.3 191,463 + TX73_000895 0.19 -1.8 191,471 - TX73_000895 0.20 -0.5 191,471 - TX73_000895 0.20 -1.8 191,471 - TX73_000895 0.20 -0.0 191,513 - TX73_000895 0.23 -0.9 191,523 - TX73_000895 0.24 -1.8 191,523 - TX73_000895 0.24 -1.0 191,540 - TX73_000895 0.26 +0.8 191,585 + TX73_000895 0.30 +0.4 191,591 + TX73_000895 0.31 -1.9 191,596 + TX73_000895 0.31 -1.8 191,596 + TX73_000895 0.31 +1.1 191,603 - TX73_000895 0.32 +0.6 191,604 - TX73_000895 0.32 -0.9 191,604 - TX73_000895 0.32 -2.2 191,604 - TX73_000895 0.32 +0.3 191,650 + TX73_000895 0.36 +1.4 191,656 + TX73_000895 0.37 -0.1 191,656 + TX73_000895 0.37 -0.4 191,656 + TX73_000895 0.37 +0.4 191,656 + TX73_000895 0.37 -1.1 191,681 - TX73_000895 0.39 -0.8 191,744 + TX73_000895 0.45 -0.2 191,790 - TX73_000895 0.49 -0.0 191,792 - TX73_000895 0.49 -2.4 191,795 - TX73_000895 0.50 +0.5 191,861 - TX73_000895 0.56 +0.0 191,867 - TX73_000895 0.56 -0.1 191,871 - TX73_000895 0.57 -1.8 191,902 + TX73_000895 0.60 +0.4 191,908 + TX73_000895 0.60 -1.1 191,910 - TX73_000895 0.61 -0.1 191,910 - TX73_000895 0.61 -1.1 191,922 - TX73_000895 0.62 -0.6 191,928 - TX73_000895 0.62 +0.1 191,928 - TX73_000895 0.62 +0.7 191,928 - TX73_000895 0.62 +0.5 191,936 + TX73_000895 0.63 +0.4 191,953 + TX73_000895 0.65 -1.5 191,970 + TX73_000895 0.66 +0.1 191,970 + TX73_000895 0.66 -1.1 191,999 + TX73_000895 0.69 -1.9 192,046 + TX73_000895 0.73 -1.6 192,052 + TX73_000895 0.74 +1.0 192,062 + TX73_000895 0.75 -0.5 192,062 + TX73_000895 0.75 -0.8 192,062 + TX73_000895 0.75 +0.3 192,064 + TX73_000895 0.75 -2.3 192,072 - TX73_000895 0.76 -0.1 192,072 - TX73_000895 0.76 -0.8 192,072 - TX73_000895 0.76 -0.1 192,072 - TX73_000895 0.76 +0.9 192,072 - TX73_000895 0.76 -2.1 192,118 + TX73_000895 0.80 -1.2 192,128 + TX73_000895 0.81 -0.8 192,135 + TX73_000895 0.82 -0.5 192,136 - TX73_000895 0.82 +0.5 192,172 - TX73_000895 0.85 -0.9 192,175 + TX73_000895 0.85 -0.2 192,188 - TX73_000895 0.86 +0.4 192,195 + TX73_000895 0.87 -2.5 192,196 + TX73_000895 0.87 +0.3 192,217 + TX73_000895 0.89 +0.4 192,224 + TX73_000895 0.90 -0.9 192,254 + +0.4 192,254 + -0.9 192,254 + +2.0 192,259 + -0.6 192,262 - -0.0 192,262 - +0.7 192,262 - -0.5 192,262 - -0.9 192,269 + -3.4 192,289 + -0.6 192,290 + +0.5 192,313 - -1.2 192,313 - +0.4 192,315 + +0.2 192,328 + +1.0 192,336 - -1.1 192,346 - +1.4 192,395 + -0.4 192,403 - +0.0 192,406 + +0.6 192,412 + +0.4 192,414 - -0.8 192,414 - +0.5 192,414 - -0.9 192,420 - +0.6 192,474 + +0.0 192,518 + -0.2 192,563 + -2.1 192,563 + -0.5 192,563 + +0.8 192,563 + -0.2 192,571 - +1.5 192,571 - -0.0 192,580 - -0.9 192,583 + +0.8 192,584 + +1.1 192,584 + -0.5 192,587 - +1.8 192,589 + +0.4 192,589 + -0.2 192,589 + -1.2 192,589 + +0.1 192,589 + +0.2 192,589 + -0.0 192,589 + -0.1 192,589 + +1.5 192,589 + +0.8 192,589 + -1.8 192,589 + +1.2 192,589 + +0.7 192,592 - +0.1 192,594 + -0.2 192,597 - +0.1 192,597 - +0.4 192,597 - -0.8 192,597 - +0.1 192,597 - +0.6 192,597 - -1.0 192,597 - -0.3 192,597 - +1.0 192,597 - -0.7 192,597 - -0.0 192,597 - +0.5 192,597 - -1.5 192,615 - -1.3 192,653 + +0.3 192,661 - +0.0 192,661 - +0.6 192,661 - -0.9 192,673 - -0.6 192,686 + -2.1 192,754 + TX73_000900 0.16 -0.6 192,755 - TX73_000900 0.16 +0.2 192,769 - TX73_000900 0.17 -1.0 192,842 + TX73_000900 0.25 -0.6 192,844 + TX73_000900 0.25 -2.2 192,850 - TX73_000900 0.26 -1.8 192,863 + TX73_000900 0.27 +1.1 192,863 + TX73_000900 0.27 +1.4 192,863 + TX73_000900 0.27 +1.2 192,871 - TX73_000900 0.28 -0.9 192,885 - TX73_000900 0.30 -2.2 192,915 - TX73_000900 0.33 +1.4 192,926 - TX73_000900 0.34 +0.7 192,949 + TX73_000900 0.36 +0.5 192,949 + TX73_000900 0.36 +0.4 192,963 + TX73_000900 0.38 -0.6 192,971 - TX73_000900 0.39 +0.8 192,972 - TX73_000900 0.39 -1.2 193,002 + TX73_000900 0.42 -2.2 193,007 - TX73_000900 0.43 +0.0 193,013 + TX73_000900 0.43 +0.8 193,022 - TX73_000900 0.44 -2.1 193,040 + TX73_000900 0.46 +0.6 193,046 + TX73_000900 0.47 -1.1 193,107 + TX73_000900 0.53 -0.6 193,115 - TX73_000900 0.54 -0.6 193,126 + TX73_000900 0.55 +0.2 193,133 - TX73_000900 0.56 -0.9 193,134 - TX73_000900 0.56 +0.9 193,154 - TX73_000900 0.58 -0.8 193,159 - TX73_000900 0.59 -1.7 193,171 + TX73_000900 0.60 -0.8 193,187 - TX73_000900 0.61 +0.9 193,195 - TX73_000900 0.62 +0.3 193,214 - TX73_000900 0.64 +1.0 193,232 + TX73_000900 0.66 -1.6 193,256 + TX73_000900 0.69 +0.3 193,264 - TX73_000900 0.70 +2.4 193,264 - TX73_000900 0.70 +2.2 193,273 + TX73_000900 0.71 +0.2
Or see this region's nucleotide sequence