Experiment: starvation expt 1; 14 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000850 and TX73_000855 are separated by 203 nucleotides TX73_000855 and TX73_000860 are separated by 24 nucleotides TX73_000860 and TX73_000865 are separated by 289 nucleotides
TX73_000850: TX73_000850 - glutamate 5-kinase, at 181,888 to 183,018
_000850
TX73_000855: TX73_000855 - glutamate-5-semialdehyde dehydrogenase, at 183,222 to 184,514
_000855
TX73_000860: TX73_000860 - nicotinate-nucleotide adenylyltransferase, at 184,539 to 185,168
_000860
TX73_000865: TX73_000865 - ribosome silencing factor, at 185,458 to 185,835
_000865
Position (kb) 183
184
185 Strain fitness (log2 ratio) -1
0
1 at 183.020 kb on - strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.025 kb on + strand at 183.033 kb on - strand at 183.033 kb on - strand at 183.033 kb on - strand at 183.033 kb on - strand at 183.033 kb on - strand at 183.033 kb on - strand at 183.033 kb on - strand at 183.033 kb on - strand at 183.072 kb on + strand at 183.243 kb on + strand at 183.292 kb on - strand at 184.534 kb on - strand at 184.546 kb on - strand at 184.562 kb on + strand at 185.178 kb on + strand at 185.178 kb on + strand at 185.207 kb on + strand at 185.215 kb on - strand at 185.215 kb on - strand at 185.252 kb on - strand at 185.254 kb on + strand at 185.263 kb on - strand at 185.277 kb on - strand at 185.291 kb on + strand at 185.341 kb on + strand at 185.355 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.360 kb on + strand at 185.362 kb on + strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.368 kb on - strand at 185.399 kb on + strand at 185.415 kb on + strand at 185.429 kb on + strand at 185.429 kb on + strand at 185.429 kb on + strand at 185.432 kb on - strand at 185.432 kb on - strand at 185.437 kb on - strand at 185.437 kb on - strand at 185.438 kb on - strand at 185.447 kb on + strand at 185.447 kb on + strand at 185.447 kb on + strand at 185.447 kb on + strand at 185.448 kb on - strand at 185.455 kb on - strand at 185.455 kb on - strand at 185.455 kb on - strand at 185.455 kb on - strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.478 kb on + strand at 185.486 kb on - strand at 185.486 kb on - strand at 185.486 kb on - strand at 185.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 1; 14 days; outgrowth in CAAc remove 183,020 - +0.4 183,025 + -0.2 183,025 + +0.2 183,025 + +0.7 183,025 + +0.5 183,025 + -0.3 183,025 + +0.1 183,025 + -0.3 183,025 + +1.1 183,025 + -1.1 183,025 + +0.7 183,033 - -0.2 183,033 - -0.9 183,033 - -0.5 183,033 - +0.3 183,033 - +0.3 183,033 - -0.3 183,033 - -0.0 183,033 - -0.3 183,072 + +0.2 183,243 + -0.4 183,292 - -0.9 184,534 - -0.8 184,546 - +0.1 184,562 + +1.0 185,178 + -0.5 185,178 + +1.3 185,207 + +1.4 185,215 - -0.7 185,215 - -0.7 185,252 - +0.3 185,254 + -1.6 185,263 - -1.2 185,277 - +0.2 185,291 + -0.2 185,341 + +0.2 185,355 + -0.3 185,360 + +0.1 185,360 + +0.1 185,360 + +0.3 185,360 + -0.0 185,360 + +0.8 185,360 + +0.6 185,362 + +0.4 185,368 - +0.5 185,368 - -1.3 185,368 - +0.6 185,368 - +0.5 185,368 - +0.1 185,368 - +0.7 185,368 - -0.5 185,399 + -0.2 185,415 + -0.2 185,429 + -0.8 185,429 + +0.4 185,429 + +0.3 185,432 - +0.2 185,432 - -0.3 185,437 - -0.2 185,437 - +0.1 185,438 - -0.1 185,447 + +0.5 185,447 + -0.3 185,447 + -0.6 185,447 + -0.1 185,448 - +0.6 185,455 - +0.2 185,455 - -0.9 185,455 - +0.3 185,455 - +0.6 185,478 + +1.2 185,478 + -0.6 185,478 + -0.6 185,478 + -0.5 185,478 + -0.1 185,478 + -0.3 185,478 + +0.7 185,486 - -0.4 185,486 - +0.0 185,486 - -0.6 185,486 - +0.3
Or see this region's nucleotide sequence