Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_006775

Experiment: starvation expt 3; 7 days; outgrowth in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_006765 and TX73_006770 are separated by 107 nucleotidesTX73_006770 and TX73_006775 are separated by 420 nucleotidesTX73_006775 and TX73_006780 are separated by 196 nucleotides TX73_006765: TX73_006765 - cytochrome d ubiquinol oxidase subunit II, at 1,437,557 to 1,438,582 _006765 TX73_006770: TX73_006770 - UBP-type zinc finger domain-containing protein, at 1,438,690 to 1,438,998 _006770 TX73_006775: TX73_006775 - AraC family transcriptional regulator, at 1,439,419 to 1,440,021 _006775 TX73_006780: TX73_006780 - sensor histidine kinase, at 1,440,218 to 1,440,916 _006780 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -1 0 1 2at 1438.465 kb on + strand, within TX73_006765at 1438.492 kb on - strandat 1438.520 kb on + strandat 1438.549 kb on + strandat 1438.589 kb on - strandat 1438.610 kb on + strandat 1438.719 kb on + strandat 1438.719 kb on + strandat 1438.735 kb on - strand, within TX73_006770at 1438.748 kb on + strand, within TX73_006770at 1438.748 kb on + strand, within TX73_006770at 1438.748 kb on + strand, within TX73_006770at 1438.748 kb on + strand, within TX73_006770at 1438.756 kb on - strand, within TX73_006770at 1438.756 kb on - strand, within TX73_006770at 1438.756 kb on - strand, within TX73_006770at 1438.886 kb on - strand, within TX73_006770at 1438.891 kb on + strand, within TX73_006770at 1438.910 kb on + strand, within TX73_006770at 1438.918 kb on - strand, within TX73_006770at 1438.918 kb on - strand, within TX73_006770at 1438.966 kb on - strand, within TX73_006770at 1439.051 kb on + strandat 1439.106 kb on + strandat 1439.131 kb on + strandat 1439.148 kb on + strandat 1439.163 kb on + strandat 1439.172 kb on - strandat 1439.180 kb on - strandat 1439.188 kb on + strandat 1439.234 kb on - strandat 1439.248 kb on - strandat 1439.264 kb on + strandat 1439.416 kb on + strandat 1439.416 kb on + strandat 1439.416 kb on + strandat 1439.424 kb on - strandat 1439.526 kb on + strand, within TX73_006775at 1439.610 kb on + strand, within TX73_006775at 1439.740 kb on + strand, within TX73_006775at 1439.838 kb on - strand, within TX73_006775at 1439.897 kb on + strand, within TX73_006775at 1440.021 kb on - strandat 1440.100 kb on + strandat 1440.100 kb on + strandat 1440.152 kb on + strandat 1440.439 kb on + strand, within TX73_006780at 1440.458 kb on + strand, within TX73_006780at 1440.468 kb on + strand, within TX73_006780at 1440.559 kb on + strand, within TX73_006780at 1440.695 kb on + strand, within TX73_006780at 1440.703 kb on - strand, within TX73_006780at 1440.708 kb on - strand, within TX73_006780at 1440.733 kb on + strand, within TX73_006780at 1440.750 kb on + strand, within TX73_006780at 1440.756 kb on + strand, within TX73_006780at 1440.974 kb on + strandat 1440.974 kb on + strandat 1440.974 kb on + strandat 1440.982 kb on - strandat 1441.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation expt 3; 7 days; outgrowth in CAAc
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1,438,465 + TX73_006765 0.88 -0.5
1,438,492 - -0.4
1,438,520 + -1.2
1,438,549 + +0.6
1,438,589 - +0.7
1,438,610 + -1.0
1,438,719 + +1.2
1,438,719 + +0.3
1,438,735 - TX73_006770 0.15 -0.9
1,438,748 + TX73_006770 0.19 +0.9
1,438,748 + TX73_006770 0.19 -0.2
1,438,748 + TX73_006770 0.19 -0.8
1,438,748 + TX73_006770 0.19 +0.1
1,438,756 - TX73_006770 0.21 +0.2
1,438,756 - TX73_006770 0.21 -0.8
1,438,756 - TX73_006770 0.21 -0.8
1,438,886 - TX73_006770 0.63 -1.5
1,438,891 + TX73_006770 0.65 -0.1
1,438,910 + TX73_006770 0.71 -0.1
1,438,918 - TX73_006770 0.74 +0.2
1,438,918 - TX73_006770 0.74 +0.2
1,438,966 - TX73_006770 0.89 +0.9
1,439,051 + +0.6
1,439,106 + -0.3
1,439,131 + +0.5
1,439,148 + -0.9
1,439,163 + -0.0
1,439,172 - +0.2
1,439,180 - +0.1
1,439,188 + -0.8
1,439,234 - -0.1
1,439,248 - +0.0
1,439,264 + -0.4
1,439,416 + +0.3
1,439,416 + +0.3
1,439,416 + -0.2
1,439,424 - +2.2
1,439,526 + TX73_006775 0.18 +0.6
1,439,610 + TX73_006775 0.32 +1.9
1,439,740 + TX73_006775 0.53 -0.0
1,439,838 - TX73_006775 0.69 +0.5
1,439,897 + TX73_006775 0.79 -0.9
1,440,021 - -0.7
1,440,100 + +0.6
1,440,100 + -0.8
1,440,152 + +0.4
1,440,439 + TX73_006780 0.32 -0.8
1,440,458 + TX73_006780 0.34 -0.5
1,440,468 + TX73_006780 0.36 -0.4
1,440,559 + TX73_006780 0.49 -0.7
1,440,695 + TX73_006780 0.68 +0.2
1,440,703 - TX73_006780 0.69 +0.5
1,440,708 - TX73_006780 0.70 -0.0
1,440,733 + TX73_006780 0.74 +1.4
1,440,750 + TX73_006780 0.76 -1.0
1,440,756 + TX73_006780 0.77 -0.3
1,440,974 + +0.4
1,440,974 + +0.2
1,440,974 + +0.5
1,440,982 - -0.8
1,441,009 - +0.8

Or see this region's nucleotide sequence