Experiment: starvation expt 1; 7 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002285 and TX73_002290 are separated by 123 nucleotides TX73_002290 and TX73_002295 are separated by 12 nucleotides TX73_002295 and TX73_002300 are separated by 128 nucleotides TX73_002300 and TX73_002305 are separated by 200 nucleotides
TX73_002285: TX73_002285 - DUF2336 domain-containing protein, at 486,600 to 487,685
_002285
TX73_002290: TX73_002290 - phytanoyl-CoA dioxygenase family protein, at 487,809 to 488,657
_002290
TX73_002295: TX73_002295 - tRNA (guanine(46)-N(7))-methyltransferase TrmB, at 488,670 to 489,413
_002295
TX73_002300: TX73_002300 - helix-turn-helix domain-containing protein, at 489,542 to 489,961
_002300
TX73_002305: TX73_002305 - apolipoprotein N-acyltransferase, at 490,162 to 491,772
_002305
Position (kb) 488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 487.679 kb on + strand at 487.679 kb on + strand at 487.679 kb on + strand at 487.679 kb on + strand at 487.679 kb on + strand at 487.687 kb on - strand at 487.687 kb on - strand at 487.698 kb on + strand at 487.725 kb on + strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.859 kb on + strand at 487.868 kb on - strand at 487.869 kb on - strand at 487.905 kb on + strand, within TX73_002290 at 487.910 kb on + strand, within TX73_002290 at 487.928 kb on + strand, within TX73_002290 at 487.928 kb on + strand, within TX73_002290 at 487.963 kb on - strand, within TX73_002290 at 487.975 kb on + strand, within TX73_002290 at 488.021 kb on + strand, within TX73_002290 at 488.021 kb on + strand, within TX73_002290 at 488.037 kb on + strand, within TX73_002290 at 488.114 kb on + strand, within TX73_002290 at 488.278 kb on - strand, within TX73_002290 at 488.308 kb on - strand, within TX73_002290 at 488.368 kb on + strand, within TX73_002290 at 488.374 kb on + strand, within TX73_002290 at 488.381 kb on - strand, within TX73_002290 at 488.408 kb on + strand, within TX73_002290 at 488.456 kb on + strand, within TX73_002290 at 488.606 kb on + strand at 488.668 kb on + strand at 488.668 kb on + strand at 488.668 kb on + strand at 488.676 kb on - strand at 488.676 kb on - strand at 488.676 kb on - strand at 488.791 kb on - strand, within TX73_002295 at 488.792 kb on + strand, within TX73_002295 at 488.813 kb on + strand, within TX73_002295 at 488.826 kb on + strand, within TX73_002295 at 488.826 kb on + strand, within TX73_002295 at 488.834 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.844 kb on - strand, within TX73_002295 at 488.879 kb on + strand, within TX73_002295 at 488.918 kb on - strand, within TX73_002295 at 488.921 kb on - strand, within TX73_002295 at 488.931 kb on - strand, within TX73_002295 at 488.962 kb on + strand, within TX73_002295 at 488.962 kb on + strand, within TX73_002295 at 488.974 kb on - strand, within TX73_002295 at 488.984 kb on + strand, within TX73_002295 at 488.984 kb on + strand, within TX73_002295 at 488.994 kb on + strand, within TX73_002295 at 488.999 kb on + strand, within TX73_002295 at 489.001 kb on + strand, within TX73_002295 at 489.009 kb on + strand, within TX73_002295 at 489.009 kb on - strand, within TX73_002295 at 489.014 kb on + strand, within TX73_002295 at 489.039 kb on - strand, within TX73_002295 at 489.079 kb on + strand, within TX73_002295 at 489.096 kb on + strand, within TX73_002295 at 489.112 kb on - strand, within TX73_002295 at 489.135 kb on + strand, within TX73_002295 at 489.158 kb on - strand, within TX73_002295 at 489.163 kb on - strand, within TX73_002295 at 489.197 kb on + strand, within TX73_002295 at 489.197 kb on - strand, within TX73_002295 at 489.205 kb on + strand, within TX73_002295 at 489.227 kb on + strand, within TX73_002295 at 489.288 kb on + strand, within TX73_002295 at 489.296 kb on - strand, within TX73_002295 at 489.313 kb on + strand, within TX73_002295 at 489.343 kb on - strand at 489.343 kb on - strand at 489.356 kb on - strand at 489.358 kb on + strand at 489.373 kb on + strand at 489.381 kb on - strand at 489.432 kb on + strand at 489.432 kb on + strand at 489.440 kb on - strand at 489.440 kb on - strand at 489.446 kb on + strand at 489.451 kb on + strand at 489.451 kb on + strand at 489.459 kb on - strand at 489.459 kb on - strand at 489.631 kb on + strand, within TX73_002300 at 489.643 kb on + strand, within TX73_002300 at 489.643 kb on + strand, within TX73_002300 at 489.699 kb on + strand, within TX73_002300 at 489.710 kb on - strand, within TX73_002300 at 489.722 kb on - strand, within TX73_002300 at 489.726 kb on - strand, within TX73_002300 at 489.738 kb on - strand, within TX73_002300 at 489.767 kb on + strand, within TX73_002300 at 489.767 kb on + strand, within TX73_002300 at 489.787 kb on + strand, within TX73_002300 at 489.795 kb on - strand, within TX73_002300 at 489.810 kb on + strand, within TX73_002300 at 489.849 kb on + strand, within TX73_002300 at 489.882 kb on + strand, within TX73_002300 at 489.890 kb on - strand, within TX73_002300 at 489.947 kb on - strand at 489.970 kb on + strand at 489.972 kb on + strand at 489.972 kb on + strand at 489.972 kb on + strand at 489.980 kb on - strand at 489.980 kb on - strand at 489.995 kb on + strand at 489.995 kb on + strand at 489.997 kb on - strand at 490.010 kb on + strand at 490.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 1; 7 days; outgrowth in CAAc remove 487,679 + +0.3 487,679 + +0.0 487,679 + -0.5 487,679 + +0.2 487,679 + -0.6 487,687 - +0.1 487,687 - +0.4 487,698 + -0.7 487,725 + -0.6 487,768 + -0.3 487,768 + +0.8 487,859 + +0.8 487,868 - -0.6 487,869 - -0.2 487,905 + TX73_002290 0.11 -0.4 487,910 + TX73_002290 0.12 +0.5 487,928 + TX73_002290 0.14 +0.0 487,928 + TX73_002290 0.14 +0.5 487,963 - TX73_002290 0.18 +0.4 487,975 + TX73_002290 0.20 -0.1 488,021 + TX73_002290 0.25 -1.4 488,021 + TX73_002290 0.25 -0.6 488,037 + TX73_002290 0.27 -0.2 488,114 + TX73_002290 0.36 +0.1 488,278 - TX73_002290 0.55 -0.1 488,308 - TX73_002290 0.59 +0.2 488,368 + TX73_002290 0.66 +0.3 488,374 + TX73_002290 0.67 -0.2 488,381 - TX73_002290 0.67 +0.1 488,408 + TX73_002290 0.71 +0.5 488,456 + TX73_002290 0.76 -1.2 488,606 + +0.6 488,668 + +0.3 488,668 + +0.9 488,668 + +0.6 488,676 - +0.2 488,676 - +1.0 488,676 - +0.7 488,791 - TX73_002295 0.16 +0.1 488,792 + TX73_002295 0.16 +0.3 488,813 + TX73_002295 0.19 -0.7 488,826 + TX73_002295 0.21 +0.7 488,826 + TX73_002295 0.21 -1.7 488,834 - TX73_002295 0.22 -0.8 488,844 - TX73_002295 0.23 -1.8 488,844 - TX73_002295 0.23 -1.1 488,844 - TX73_002295 0.23 -2.5 488,844 - TX73_002295 0.23 -1.1 488,879 + TX73_002295 0.28 -0.2 488,918 - TX73_002295 0.33 -1.5 488,921 - TX73_002295 0.34 -0.7 488,931 - TX73_002295 0.35 -0.5 488,962 + TX73_002295 0.39 -1.0 488,962 + TX73_002295 0.39 -1.5 488,974 - TX73_002295 0.41 -0.7 488,984 + TX73_002295 0.42 -0.9 488,984 + TX73_002295 0.42 -0.8 488,994 + TX73_002295 0.44 -0.4 488,999 + TX73_002295 0.44 -2.4 489,001 + TX73_002295 0.44 +0.1 489,009 + TX73_002295 0.46 -1.3 489,009 - TX73_002295 0.46 -2.5 489,014 + TX73_002295 0.46 +0.0 489,039 - TX73_002295 0.50 -0.1 489,079 + TX73_002295 0.55 -0.8 489,096 + TX73_002295 0.57 +0.1 489,112 - TX73_002295 0.59 -0.5 489,135 + TX73_002295 0.62 +0.0 489,158 - TX73_002295 0.66 -0.1 489,163 - TX73_002295 0.66 -0.4 489,197 + TX73_002295 0.71 -0.3 489,197 - TX73_002295 0.71 -0.4 489,205 + TX73_002295 0.72 -1.4 489,227 + TX73_002295 0.75 -1.5 489,288 + TX73_002295 0.83 -1.1 489,296 - TX73_002295 0.84 -0.7 489,313 + TX73_002295 0.86 -0.2 489,343 - -1.3 489,343 - -2.5 489,356 - +0.5 489,358 + -0.8 489,373 + -0.4 489,381 - -0.1 489,432 + +0.3 489,432 + -0.7 489,440 - -0.5 489,440 - -0.9 489,446 + +0.8 489,451 + +0.9 489,451 + -0.6 489,459 - +0.9 489,459 - +0.6 489,631 + TX73_002300 0.21 -1.3 489,643 + TX73_002300 0.24 -1.5 489,643 + TX73_002300 0.24 -1.8 489,699 + TX73_002300 0.37 -2.2 489,710 - TX73_002300 0.40 -2.2 489,722 - TX73_002300 0.43 -1.2 489,726 - TX73_002300 0.44 -0.5 489,738 - TX73_002300 0.47 -1.8 489,767 + TX73_002300 0.54 -0.3 489,767 + TX73_002300 0.54 +1.2 489,787 + TX73_002300 0.58 -2.7 489,795 - TX73_002300 0.60 -3.5 489,810 + TX73_002300 0.64 -1.6 489,849 + TX73_002300 0.73 -0.9 489,882 + TX73_002300 0.81 -2.1 489,890 - TX73_002300 0.83 -1.8 489,947 - +0.2 489,970 + +0.8 489,972 + -0.2 489,972 + -3.1 489,972 + +2.6 489,980 - +0.3 489,980 - -0.8 489,995 + -0.1 489,995 + -0.1 489,997 - +1.0 490,010 + -0.3 490,133 - +0.5
Or see this region's nucleotide sequence