Experiment: starvation expt 1; 7 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_000820 and TX73_000825 are separated by 134 nucleotides TX73_000825 and TX73_000830 are separated by 211 nucleotides TX73_000830 and TX73_000835 are separated by 129 nucleotides TX73_000835 and TX73_000840 are separated by 0 nucleotides
TX73_000820: TX73_000820 - 50S ribosomal protein L27, at 177,918 to 178,190
_000820
TX73_000825: TX73_000825 - GNAT family N-acetyltransferase, at 178,325 to 178,924
_000825
TX73_000830: TX73_000830 - hypothetical protein, at 179,136 to 179,327
_000830
TX73_000835: TX73_000835 - hypothetical protein, at 179,457 to 179,630
_000835
TX73_000840: TX73_000840 - DMT family transporter, at 179,631 to 180,536
_000840
Position (kb) 179
180 Strain fitness (log2 ratio) -1
0
1
2
3 at 178.163 kb on + strand at 178.182 kb on + strand at 178.194 kb on - strand at 178.196 kb on + strand at 178.204 kb on - strand at 178.220 kb on - strand at 178.226 kb on - strand at 178.227 kb on - strand at 178.241 kb on + strand at 178.241 kb on + strand at 178.248 kb on + strand at 178.249 kb on - strand at 178.249 kb on - strand at 178.249 kb on - strand at 178.251 kb on + strand at 178.259 kb on - strand at 178.259 kb on - strand at 178.259 kb on - strand at 178.316 kb on - strand at 178.318 kb on - strand at 178.328 kb on + strand at 178.337 kb on + strand at 178.353 kb on - strand at 178.356 kb on + strand at 178.365 kb on + strand at 178.373 kb on - strand at 178.379 kb on - strand at 178.381 kb on + strand at 178.389 kb on - strand, within TX73_000825 at 178.394 kb on - strand, within TX73_000825 at 178.395 kb on + strand, within TX73_000825 at 178.403 kb on - strand, within TX73_000825 at 178.405 kb on + strand, within TX73_000825 at 178.413 kb on - strand, within TX73_000825 at 178.426 kb on + strand, within TX73_000825 at 178.426 kb on + strand, within TX73_000825 at 178.432 kb on + strand, within TX73_000825 at 178.435 kb on - strand, within TX73_000825 at 178.504 kb on + strand, within TX73_000825 at 178.519 kb on + strand, within TX73_000825 at 178.527 kb on - strand, within TX73_000825 at 178.529 kb on - strand, within TX73_000825 at 178.534 kb on + strand, within TX73_000825 at 178.534 kb on + strand, within TX73_000825 at 178.534 kb on + strand, within TX73_000825 at 178.534 kb on + strand, within TX73_000825 at 178.534 kb on + strand, within TX73_000825 at 178.541 kb on + strand, within TX73_000825 at 178.542 kb on - strand, within TX73_000825 at 178.542 kb on - strand, within TX73_000825 at 178.542 kb on - strand, within TX73_000825 at 178.542 kb on - strand, within TX73_000825 at 178.542 kb on - strand, within TX73_000825 at 178.583 kb on - strand, within TX73_000825 at 178.583 kb on - strand, within TX73_000825 at 178.583 kb on - strand, within TX73_000825 at 178.583 kb on - strand, within TX73_000825 at 178.585 kb on + strand, within TX73_000825 at 178.611 kb on - strand, within TX73_000825 at 178.612 kb on - strand, within TX73_000825 at 178.623 kb on + strand, within TX73_000825 at 178.623 kb on + strand, within TX73_000825 at 178.630 kb on + strand, within TX73_000825 at 178.635 kb on + strand, within TX73_000825 at 178.649 kb on + strand, within TX73_000825 at 178.662 kb on - strand, within TX73_000825 at 178.683 kb on - strand, within TX73_000825 at 178.702 kb on - strand, within TX73_000825 at 178.712 kb on + strand, within TX73_000825 at 178.717 kb on + strand, within TX73_000825 at 178.722 kb on + strand, within TX73_000825 at 178.722 kb on + strand, within TX73_000825 at 178.730 kb on - strand, within TX73_000825 at 178.743 kb on + strand, within TX73_000825 at 178.758 kb on + strand, within TX73_000825 at 178.761 kb on - strand, within TX73_000825 at 178.766 kb on - strand, within TX73_000825 at 178.811 kb on + strand, within TX73_000825 at 178.821 kb on + strand, within TX73_000825 at 178.829 kb on - strand, within TX73_000825 at 178.839 kb on + strand, within TX73_000825 at 178.847 kb on - strand, within TX73_000825 at 178.862 kb on + strand, within TX73_000825 at 178.862 kb on + strand, within TX73_000825 at 178.862 kb on + strand, within TX73_000825 at 178.862 kb on + strand, within TX73_000825 at 178.869 kb on + strand at 178.870 kb on - strand at 178.877 kb on + strand at 178.885 kb on - strand at 178.918 kb on + strand at 178.918 kb on + strand at 178.926 kb on - strand at 178.926 kb on - strand at 178.969 kb on + strand at 178.972 kb on - strand at 178.977 kb on - strand at 179.008 kb on - strand at 179.047 kb on + strand at 179.069 kb on + strand at 179.074 kb on + strand at 179.077 kb on - strand at 179.091 kb on - strand at 179.096 kb on - strand at 179.102 kb on + strand at 179.102 kb on + strand at 179.110 kb on - strand at 179.110 kb on - strand at 179.110 kb on - strand at 179.110 kb on - strand at 179.114 kb on + strand at 179.122 kb on - strand at 179.126 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.128 kb on + strand at 179.136 kb on - strand at 179.136 kb on - strand at 179.136 kb on - strand at 179.136 kb on - strand at 179.137 kb on + strand at 179.143 kb on - strand at 179.161 kb on - strand, within TX73_000830 at 179.161 kb on - strand, within TX73_000830 at 179.163 kb on + strand, within TX73_000830 at 179.206 kb on - strand, within TX73_000830 at 179.206 kb on - strand, within TX73_000830 at 179.223 kb on + strand, within TX73_000830 at 179.230 kb on - strand, within TX73_000830 at 179.264 kb on - strand, within TX73_000830 at 179.277 kb on + strand, within TX73_000830 at 179.329 kb on - strand at 179.331 kb on - strand at 179.466 kb on - strand at 179.527 kb on + strand, within TX73_000835 at 179.527 kb on - strand, within TX73_000835 at 179.542 kb on + strand, within TX73_000835 at 179.557 kb on - strand, within TX73_000835 at 179.590 kb on - strand, within TX73_000835 at 179.621 kb on - strand at 179.625 kb on - strand at 179.627 kb on + strand at 179.645 kb on - strand at 179.656 kb on + strand at 179.659 kb on - strand at 179.727 kb on + strand, within TX73_000840 at 179.735 kb on - strand, within TX73_000840 at 179.745 kb on - strand, within TX73_000840 at 179.754 kb on + strand, within TX73_000840 at 179.779 kb on + strand, within TX73_000840 at 179.844 kb on - strand, within TX73_000840 at 179.849 kb on - strand, within TX73_000840 at 179.849 kb on - strand, within TX73_000840 at 179.849 kb on - strand, within TX73_000840 at 179.871 kb on - strand, within TX73_000840 at 179.871 kb on - strand, within TX73_000840 at 179.886 kb on - strand, within TX73_000840 at 179.903 kb on + strand, within TX73_000840 at 179.927 kb on + strand, within TX73_000840 at 179.927 kb on + strand, within TX73_000840 at 179.935 kb on - strand, within TX73_000840 at 179.935 kb on - strand, within TX73_000840 at 179.940 kb on - strand, within TX73_000840 at 179.945 kb on - strand, within TX73_000840 at 179.960 kb on + strand, within TX73_000840 at 179.967 kb on + strand, within TX73_000840 at 179.968 kb on - strand, within TX73_000840 at 179.974 kb on + strand, within TX73_000840 at 179.975 kb on - strand, within TX73_000840 at 179.975 kb on - strand, within TX73_000840 at 179.975 kb on - strand, within TX73_000840 at 179.986 kb on - strand, within TX73_000840 at 180.015 kb on - strand, within TX73_000840 at 180.019 kb on + strand, within TX73_000840 at 180.020 kb on - strand, within TX73_000840 at 180.025 kb on - strand, within TX73_000840 at 180.044 kb on - strand, within TX73_000840 at 180.061 kb on - strand, within TX73_000840 at 180.071 kb on - strand, within TX73_000840 at 180.071 kb on - strand, within TX73_000840 at 180.077 kb on - strand, within TX73_000840 at 180.084 kb on - strand, within TX73_000840 at 180.119 kb on - strand, within TX73_000840 at 180.149 kb on - strand, within TX73_000840 at 180.162 kb on - strand, within TX73_000840 at 180.198 kb on + strand, within TX73_000840 at 180.207 kb on - strand, within TX73_000840 at 180.243 kb on - strand, within TX73_000840 at 180.244 kb on + strand, within TX73_000840 at 180.244 kb on + strand, within TX73_000840 at 180.246 kb on + strand, within TX73_000840 at 180.252 kb on - strand, within TX73_000840 at 180.290 kb on + strand, within TX73_000840 at 180.296 kb on + strand, within TX73_000840 at 180.304 kb on + strand, within TX73_000840 at 180.304 kb on + strand, within TX73_000840
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 1; 7 days; outgrowth in CAAc remove 178,163 + +0.4 178,182 + -0.4 178,194 - -1.6 178,196 + +0.3 178,204 - -0.3 178,220 - +0.9 178,226 - +1.3 178,227 - +0.3 178,241 + +0.1 178,241 + +1.0 178,248 + -0.1 178,249 - +0.2 178,249 - +1.2 178,249 - +0.5 178,251 + +0.5 178,259 - +0.7 178,259 - +0.5 178,259 - +0.0 178,316 - -0.2 178,318 - +1.3 178,328 + +0.5 178,337 + +0.8 178,353 - +0.9 178,356 + +0.4 178,365 + +0.0 178,373 - +0.7 178,379 - +0.5 178,381 + +1.3 178,389 - TX73_000825 0.11 -0.1 178,394 - TX73_000825 0.12 +0.5 178,395 + TX73_000825 0.12 -0.5 178,403 - TX73_000825 0.13 +0.1 178,405 + TX73_000825 0.13 +0.1 178,413 - TX73_000825 0.15 +1.1 178,426 + TX73_000825 0.17 +0.6 178,426 + TX73_000825 0.17 +1.5 178,432 + TX73_000825 0.18 +0.1 178,435 - TX73_000825 0.18 -0.3 178,504 + TX73_000825 0.30 +1.0 178,519 + TX73_000825 0.32 -0.4 178,527 - TX73_000825 0.34 -0.3 178,529 - TX73_000825 0.34 -0.0 178,534 + TX73_000825 0.35 +0.9 178,534 + TX73_000825 0.35 +0.5 178,534 + TX73_000825 0.35 +0.4 178,534 + TX73_000825 0.35 -0.0 178,534 + TX73_000825 0.35 +0.5 178,541 + TX73_000825 0.36 +0.4 178,542 - TX73_000825 0.36 +1.0 178,542 - TX73_000825 0.36 +0.7 178,542 - TX73_000825 0.36 +0.3 178,542 - TX73_000825 0.36 -0.1 178,542 - TX73_000825 0.36 +0.7 178,583 - TX73_000825 0.43 +0.1 178,583 - TX73_000825 0.43 +0.6 178,583 - TX73_000825 0.43 +0.3 178,583 - TX73_000825 0.43 +0.5 178,585 + TX73_000825 0.43 -0.3 178,611 - TX73_000825 0.48 -0.6 178,612 - TX73_000825 0.48 +0.8 178,623 + TX73_000825 0.50 +1.0 178,623 + TX73_000825 0.50 +0.2 178,630 + TX73_000825 0.51 +0.7 178,635 + TX73_000825 0.52 -0.4 178,649 + TX73_000825 0.54 -0.7 178,662 - TX73_000825 0.56 +0.8 178,683 - TX73_000825 0.60 +3.3 178,702 - TX73_000825 0.63 -0.0 178,712 + TX73_000825 0.65 +0.1 178,717 + TX73_000825 0.65 +0.4 178,722 + TX73_000825 0.66 +0.6 178,722 + TX73_000825 0.66 +0.4 178,730 - TX73_000825 0.68 +0.0 178,743 + TX73_000825 0.70 -0.1 178,758 + TX73_000825 0.72 +0.4 178,761 - TX73_000825 0.73 +0.7 178,766 - TX73_000825 0.73 +0.0 178,811 + TX73_000825 0.81 -0.0 178,821 + TX73_000825 0.83 +1.4 178,829 - TX73_000825 0.84 +0.5 178,839 + TX73_000825 0.86 +0.9 178,847 - TX73_000825 0.87 +0.6 178,862 + TX73_000825 0.90 +0.5 178,862 + TX73_000825 0.90 -0.6 178,862 + TX73_000825 0.90 +0.1 178,862 + TX73_000825 0.90 +0.8 178,869 + -0.2 178,870 - -0.7 178,877 + +0.5 178,885 - +0.2 178,918 + -0.6 178,918 + +0.4 178,926 - -0.1 178,926 - +0.9 178,969 + -0.2 178,972 - +0.2 178,977 - -0.5 179,008 - -0.2 179,047 + -0.4 179,069 + -0.4 179,074 + -0.5 179,077 - -0.6 179,091 - -0.5 179,096 - -0.1 179,102 + -1.2 179,102 + -0.2 179,110 - -0.4 179,110 - +0.3 179,110 - +0.3 179,110 - +0.5 179,114 + +0.7 179,122 - -0.2 179,126 + +0.2 179,128 + -0.7 179,128 + -0.1 179,128 + +0.3 179,128 + +1.2 179,128 + -0.3 179,128 + -0.6 179,128 + +0.7 179,136 - +0.1 179,136 - -0.5 179,136 - -0.5 179,136 - -0.3 179,137 + +0.6 179,143 - +1.3 179,161 - TX73_000830 0.13 -0.9 179,161 - TX73_000830 0.13 +0.6 179,163 + TX73_000830 0.14 +0.7 179,206 - TX73_000830 0.36 -0.1 179,206 - TX73_000830 0.36 +1.3 179,223 + TX73_000830 0.45 +1.0 179,230 - TX73_000830 0.49 -0.0 179,264 - TX73_000830 0.67 +0.5 179,277 + TX73_000830 0.73 -0.2 179,329 - -0.1 179,331 - -0.1 179,466 - +0.9 179,527 + TX73_000835 0.40 -0.5 179,527 - TX73_000835 0.40 -0.2 179,542 + TX73_000835 0.49 -0.1 179,557 - TX73_000835 0.57 +0.1 179,590 - TX73_000835 0.76 -1.7 179,621 - -0.2 179,625 - -0.5 179,627 + -0.0 179,645 - +0.6 179,656 + +1.2 179,659 - -1.1 179,727 + TX73_000840 0.11 -0.1 179,735 - TX73_000840 0.11 -0.8 179,745 - TX73_000840 0.13 -1.0 179,754 + TX73_000840 0.14 +0.0 179,779 + TX73_000840 0.16 -0.1 179,844 - TX73_000840 0.24 +0.2 179,849 - TX73_000840 0.24 +0.5 179,849 - TX73_000840 0.24 -0.3 179,849 - TX73_000840 0.24 +0.3 179,871 - TX73_000840 0.26 -0.8 179,871 - TX73_000840 0.26 +0.2 179,886 - TX73_000840 0.28 +0.1 179,903 + TX73_000840 0.30 +1.0 179,927 + TX73_000840 0.33 -0.4 179,927 + TX73_000840 0.33 +0.2 179,935 - TX73_000840 0.34 +0.2 179,935 - TX73_000840 0.34 +0.2 179,940 - TX73_000840 0.34 +0.6 179,945 - TX73_000840 0.35 -1.2 179,960 + TX73_000840 0.36 +0.3 179,967 + TX73_000840 0.37 -0.2 179,968 - TX73_000840 0.37 +0.0 179,974 + TX73_000840 0.38 -0.4 179,975 - TX73_000840 0.38 +0.9 179,975 - TX73_000840 0.38 +0.8 179,975 - TX73_000840 0.38 -0.6 179,986 - TX73_000840 0.39 -0.4 180,015 - TX73_000840 0.42 -0.4 180,019 + TX73_000840 0.43 +0.3 180,020 - TX73_000840 0.43 -1.6 180,025 - TX73_000840 0.43 -0.2 180,044 - TX73_000840 0.46 +2.6 180,061 - TX73_000840 0.47 +0.4 180,071 - TX73_000840 0.49 -0.0 180,071 - TX73_000840 0.49 -0.3 180,077 - TX73_000840 0.49 -0.7 180,084 - TX73_000840 0.50 -0.5 180,119 - TX73_000840 0.54 +0.5 180,149 - TX73_000840 0.57 -0.3 180,162 - TX73_000840 0.59 -0.2 180,198 + TX73_000840 0.63 +0.1 180,207 - TX73_000840 0.64 +1.2 180,243 - TX73_000840 0.68 -0.9 180,244 + TX73_000840 0.68 -0.0 180,244 + TX73_000840 0.68 -0.2 180,246 + TX73_000840 0.68 +0.1 180,252 - TX73_000840 0.69 +0.5 180,290 + TX73_000840 0.73 -0.4 180,296 + TX73_000840 0.73 +0.0 180,304 + TX73_000840 0.74 -1.7 180,304 + TX73_000840 0.74 -1.0
Or see this region's nucleotide sequence