Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014625

Experiment: starvation expt 4; 3 days; outgrowth in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation expt 4; 3 days; outgrowth in CAAc
3,197,313	-		TX73_014615	0.47	-0.9
3,197,313	-		TX73_014615	0.47	+0.3
3,197,345	-		TX73_014615	0.58	+0.4
3,197,351	-		TX73_014615	0.60	-0.2
3,197,365	+		TX73_014615	0.65	+0.0
3,197,382	-		TX73_014615	0.70	-1.6
3,197,382	-		TX73_014615	0.70	+0.6
3,197,382	-		TX73_014615	0.70	+0.1
3,197,403	-		TX73_014615	0.78	-0.1
3,197,403	-		TX73_014615	0.78	+1.3
3,197,403	-		TX73_014615	0.78	+0.8
3,197,446	-				-0.0
3,197,448	+				+0.5
3,197,455	+				+0.3
3,197,468	+				-0.2
3,197,468	+				+0.2
3,197,511	+				+1.2
3,197,519	-				-0.5
3,197,528	+				-0.9
3,197,528	+				+0.3
3,197,530	+				-1.5
3,197,538	-				-0.6
3,197,543	+				+0.3
3,197,566	+				+0.3
3,197,596	+				+0.8
3,197,639	+				-0.0
3,197,639	+				-1.0
3,197,654	+		TX73_014620	0.13	-1.0
3,197,655	-		TX73_014620	0.13	+0.5
3,197,691	+		TX73_014620	0.22	-0.0
3,197,716	+		TX73_014620	0.28	-0.3
3,197,724	-		TX73_014620	0.30	+0.6
3,197,724	-		TX73_014620	0.30	+0.2
3,197,724	-		TX73_014620	0.30	-0.2
3,197,740	+		TX73_014620	0.34	+2.0
3,197,740	+		TX73_014620	0.34	-0.1
3,197,748	-		TX73_014620	0.36	-0.2
3,197,761	-		TX73_014620	0.39	+0.2
3,197,815	-		TX73_014620	0.53	-0.5
3,197,824	+		TX73_014620	0.55	-0.3
3,197,824	-		TX73_014620	0.55	-0.5
3,197,827	-		TX73_014620	0.56	+0.3
3,197,827	-		TX73_014620	0.56	+0.8
3,197,837	-		TX73_014620	0.58	+0.7
3,197,851	-		TX73_014620	0.62	-0.1
3,197,874	-		TX73_014620	0.67	+0.3
3,197,874	-		TX73_014620	0.67	-0.2
3,197,905	+		TX73_014620	0.75	+0.3
3,197,913	-		TX73_014620	0.77	+0.9
3,197,914	+		TX73_014620	0.77	+1.1
3,197,922	+		TX73_014620	0.79	-0.1
3,197,922	-		TX73_014620	0.79	+0.1
3,197,930	-		TX73_014620	0.81	+0.6
3,197,973	-				+0.0
3,197,994	-				-0.5
3,198,015	-				+0.3
3,198,017	-				-0.2
3,198,053	+				-0.5
3,198,054	+				-0.7
3,198,064	+				+0.0
3,198,067	-				+0.0
3,198,082	-				+0.2
3,198,103	+				+0.5
3,198,111	-				-1.4
3,198,111	-				-1.0
3,198,111	-				+0.4
3,198,111	-				+0.4
3,198,113	+				-0.3
3,198,113	+				+0.2
3,198,113	+				+0.8
3,198,128	-				+0.4
3,198,133	+				+0.9
3,198,141	-				-0.5
3,198,141	-				-0.5
3,198,159	+				+0.1
3,198,159	+				-0.2
3,198,159	+				-0.2
3,198,159	+				-0.4
3,198,159	+				-0.7
3,198,159	+				-1.9
3,198,159	+				+0.6
3,198,167	-				-0.5
3,198,167	-				-0.7
3,198,167	-				+0.0
3,198,167	-				-0.8
3,198,167	-				-0.3
3,198,167	-				+0.5
3,198,167	-				+0.0
3,198,167	-				-0.0
3,198,167	-				-0.3
3,198,186	-				-0.1
3,198,186	-				+0.3
3,198,187	+				+0.6
3,198,190	-				+0.2
3,198,197	+				-0.2
3,198,198	+				-1.1
3,198,205	-				-0.4
3,198,218	+				-0.7
3,198,218	+				+0.3
3,198,218	+				+0.0
3,198,218	+				-0.4
3,198,226	-				-0.9
3,198,228	+				+0.1
3,198,236	+				+0.5
3,198,242	+				-0.8
3,198,247	-				-1.8
3,198,259	+				+0.8
3,198,267	-				-0.1
3,198,355	+		TX73_014625	0.12	-0.4
3,198,360	+		TX73_014625	0.13	+0.4
3,198,364	-		TX73_014625	0.15	+0.0
3,198,368	-		TX73_014625	0.16	-0.1
3,198,374	+		TX73_014625	0.17	-0.6
3,198,375	+		TX73_014625	0.17	-1.8
3,198,383	-		TX73_014625	0.19	+0.1
3,198,421	-		TX73_014625	0.29	+0.6
3,198,453	+		TX73_014625	0.37	+0.2
3,198,460	+		TX73_014625	0.39	+1.9
3,198,461	-		TX73_014625	0.39	+0.6
3,198,473	+		TX73_014625	0.42	-0.3
3,198,473	+		TX73_014625	0.42	+0.2
3,198,511	+		TX73_014625	0.52	+0.5
3,198,512	-		TX73_014625	0.52	+0.9
3,198,526	-		TX73_014625	0.56	+0.8
3,198,526	-		TX73_014625	0.56	+0.9
3,198,527	-		TX73_014625	0.56	-1.3
3,198,582	-		TX73_014625	0.70	+1.0
3,198,603	+		TX73_014625	0.75	+0.8
3,198,614	-		TX73_014625	0.78	+0.4
3,198,674	+				-0.2
3,198,682	-				-0.2
3,198,721	+				-1.0
3,198,721	+				+1.1
3,198,729	-				-0.1
3,198,729	-				-0.2
3,198,736	+				-0.0
3,198,764	-				-2.7
3,198,788	+				-0.2
3,198,796	-				-0.1
3,198,796	-				+0.8
3,198,798	-				+0.3
3,198,814	-				-0.9
3,198,816	+				+1.2
3,198,816	+				+0.0
3,198,824	-				-0.1
3,198,826	-				+0.4
3,198,839	+				+0.2
3,198,844	+				+0.0
3,198,850	-				-1.4
3,198,852	-				-0.3
3,198,852	-				+1.1
3,198,856	+				+0.3
3,198,861	-				-0.1
3,198,869	-				+0.1
3,198,877	+				+1.2
3,198,921	+				+0.0
3,198,927	-				-1.0
3,198,945	+				+0.9
3,198,948	-				+0.2
3,198,981	+				+0.5
3,198,981	+				+1.2
3,198,989	-				+0.4
3,198,989	-				+0.6
3,198,989	-				-0.2
3,198,989	-				-0.6
3,198,989	-				-0.0
3,199,032	-				+0.0
3,199,034	+				+0.9
3,199,042	-				-1.5
3,199,063	-				-0.2
3,199,084	+				+0.6
3,199,091	-				+0.4
3,199,092	+				-0.1
3,199,100	-				+0.3
3,199,141	-				+0.2
3,199,182	-		TX73_014630	0.11	+0.3
3,199,186	+		TX73_014630	0.12	+0.7
3,199,194	-		TX73_014630	0.13	-0.7
3,199,197	+		TX73_014630	0.13	+0.8
3,199,204	-		TX73_014630	0.14	-0.5
3,199,204	-		TX73_014630	0.14	-0.1
3,199,205	-		TX73_014630	0.14	-0.3
3,199,205	-		TX73_014630	0.14	-0.0
3,199,205	-		TX73_014630	0.14	-0.1
3,199,207	+		TX73_014630	0.14	+0.3
3,199,207	+		TX73_014630	0.14	+0.1
3,199,207	+		TX73_014630	0.14	+0.4
3,199,215	-		TX73_014630	0.15	-0.0
3,199,226	+		TX73_014630	0.16	-0.4
3,199,231	+		TX73_014630	0.17	+1.0
3,199,231	+		TX73_014630	0.17	+1.1
3,199,231	+		TX73_014630	0.17	+0.1
3,199,231	+		TX73_014630	0.17	-1.2
3,199,239	-		TX73_014630	0.18	+0.3
3,199,239	-		TX73_014630	0.18	+1.3
3,199,239	-		TX73_014630	0.18	+0.1
3,199,241	+		TX73_014630	0.18	-1.1
3,199,244	-		TX73_014630	0.18	-0.8
3,199,244	-		TX73_014630	0.18	+0.0
3,199,246	+		TX73_014630	0.18	-0.3
3,199,253	+		TX73_014630	0.19	+0.5
3,199,273	+		TX73_014630	0.21	+1.1
3,199,273	+		TX73_014630	0.21	-0.4
3,199,273	+		TX73_014630	0.21	-0.2
3,199,281	-		TX73_014630	0.22	+0.0
3,199,281	-		TX73_014630	0.22	-0.4
3,199,286	-		TX73_014630	0.23	-1.0
3,199,286	-		TX73_014630	0.23	-0.2
3,199,286	-		TX73_014630	0.23	+1.1
3,199,288	+		TX73_014630	0.23	-0.9
3,199,288	+		TX73_014630	0.23	+0.6
3,199,288	+		TX73_014630	0.23	+0.5
3,199,288	+		TX73_014630	0.23	-0.0
3,199,288	+		TX73_014630	0.23	-1.0
3,199,288	+		TX73_014630	0.23	+2.1
3,199,288	+		TX73_014630	0.23	+0.5
3,199,288	-		TX73_014630	0.23	-0.5
3,199,288	-		TX73_014630	0.23	-0.3
3,199,288	-		TX73_014630	0.23	-0.1
3,199,296	-		TX73_014630	0.24	-0.5
3,199,296	-		TX73_014630	0.24	-1.0
3,199,327	-		TX73_014630	0.27	+0.4
3,199,356	+		TX73_014630	0.31	+0.8
3,199,356	+		TX73_014630	0.31	+0.5
3,199,360	+		TX73_014630	0.31	-0.2
3,199,389	+		TX73_014630	0.34	+1.2
3,199,407	+		TX73_014630	0.36	+0.4
3,199,409	+		TX73_014630	0.37	-0.2
3,199,409	+		TX73_014630	0.37	-0.7
3,199,409	+		TX73_014630	0.37	+0.2
3,199,417	-		TX73_014630	0.37	-0.4
3,199,417	-		TX73_014630	0.37	-0.8
3,199,417	-		TX73_014630	0.37	-0.8
3,199,417	-		TX73_014630	0.37	-0.7
3,199,417	-		TX73_014630	0.37	+1.3
3,199,445	+		TX73_014630	0.41	+0.6
3,199,447	-		TX73_014630	0.41	-0.1
3,199,453	-		TX73_014630	0.41	-1.0
3,199,465	-		TX73_014630	0.43	+0.1
3,199,511	-		TX73_014630	0.48	+1.2
3,199,526	+		TX73_014630	0.50	-0.7
3,199,546	+		TX73_014630	0.52	-0.0
3,199,575	-		TX73_014630	0.55	-1.2
3,199,584	+		TX73_014630	0.56	-0.2
3,199,585	+		TX73_014630	0.56	+0.2
3,199,586	+		TX73_014630	0.56	-0.4
3,199,586	+		TX73_014630	0.56	-0.4
3,199,592	-		TX73_014630	0.57	-0.9
3,199,594	-		TX73_014630	0.57	-0.5
3,199,594	-		TX73_014630	0.57	+0.0
3,199,594	-		TX73_014630	0.57	-0.9
3,199,594	-		TX73_014630	0.57	-1.0
3,199,646	+		TX73_014630	0.63	+0.0
3,199,650	-		TX73_014630	0.63	-0.1
3,199,652	+		TX73_014630	0.64	-0.7
3,199,652	-		TX73_014630	0.64	-0.2
3,199,652	-		TX73_014630	0.64	+0.3
3,199,654	-		TX73_014630	0.64	+0.4
3,199,663	+		TX73_014630	0.65	+0.2
3,199,673	+		TX73_014630	0.66	+0.3