Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_005445

Experiment: starvation expt 4; 3 days; outgrowth in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation expt 4; 3 days; outgrowth in CAAc
1,167,426	+		TX73_005440	0.11	+1.0
1,167,455	-		TX73_005440	0.14	+1.0
1,167,468	+		TX73_005440	0.15	-0.1
1,167,468	+		TX73_005440	0.15	+0.4
1,167,470	+		TX73_005440	0.15	-0.7
1,167,476	-		TX73_005440	0.16	-0.2
1,167,500	+		TX73_005440	0.18	+1.3
1,167,500	+		TX73_005440	0.18	+0.4
1,167,501	+		TX73_005440	0.18	+1.0
1,167,503	-		TX73_005440	0.19	-0.6
1,167,521	+		TX73_005440	0.20	+0.1
1,167,526	+		TX73_005440	0.21	+0.1
1,167,537	+		TX73_005440	0.22	-0.5
1,167,572	-		TX73_005440	0.25	-0.8
1,167,594	-		TX73_005440	0.28	-0.7
1,167,607	+		TX73_005440	0.29	+1.9
1,167,608	-		TX73_005440	0.29	+0.6
1,167,618	+		TX73_005440	0.30	+0.1
1,167,620	-		TX73_005440	0.30	-1.1
1,167,625	-		TX73_005440	0.31	-0.8
1,167,659	+		TX73_005440	0.34	-0.4
1,167,659	+		TX73_005440	0.34	+0.2
1,167,659	+		TX73_005440	0.34	-0.2
1,167,667	-		TX73_005440	0.35	-0.7
1,167,701	-		TX73_005440	0.38	+0.7
1,167,702	+		TX73_005440	0.38	-1.5
1,167,725	+		TX73_005440	0.40	+1.1
1,167,740	+		TX73_005440	0.42	+0.3
1,167,779	+		TX73_005440	0.46	-0.3
1,167,787	-		TX73_005440	0.46	-0.6
1,167,831	+		TX73_005440	0.51	-0.1
1,167,832	+		TX73_005440	0.51	-0.4
1,167,840	-		TX73_005440	0.52	-0.8
1,167,856	+		TX73_005440	0.53	-1.1
1,167,861	+		TX73_005440	0.54	-0.2
1,167,863	+		TX73_005440	0.54	+0.7
1,167,925	+		TX73_005440	0.60	-0.9
1,167,926	-		TX73_005440	0.60	-0.1
1,167,934	+		TX73_005440	0.61	+0.6
1,167,948	-		TX73_005440	0.62	-0.1
1,167,966	-		TX73_005440	0.64	-0.8
1,168,017	+		TX73_005440	0.69	-0.0
1,168,025	-		TX73_005440	0.70	-0.8
1,168,039	+		TX73_005440	0.71	+0.4
1,168,039	+		TX73_005440	0.71	-1.0
1,168,081	+		TX73_005440	0.75	-1.4
1,168,203	-		TX73_005440	0.87	+0.4
1,168,338	-				+0.1
1,168,382	+				-0.5
1,168,462	-				+0.2
1,168,469	-				-1.6
1,168,554	-				+0.1
1,168,573	+				-0.4
1,168,581	-				+0.1
1,168,636	+				-0.1
1,168,641	+				+1.1
1,168,659	-		TX73_005445	0.11	-0.3
1,168,659	-		TX73_005445	0.11	-0.3
1,168,707	+		TX73_005445	0.13	-0.0
1,168,715	-		TX73_005445	0.13	+0.7
1,168,731	+		TX73_005445	0.14	-0.3
1,168,731	+		TX73_005445	0.14	-2.1
1,168,757	+		TX73_005445	0.15	-0.0
1,168,808	-		TX73_005445	0.18	-0.3
1,168,832	-		TX73_005445	0.19	-0.3
1,168,851	+		TX73_005445	0.19	-2.0
1,168,866	+		TX73_005445	0.20	-0.0
1,168,929	+		TX73_005445	0.23	-0.8
1,168,937	-		TX73_005445	0.23	-0.7
1,168,937	-		TX73_005445	0.23	+0.1
1,169,032	-		TX73_005445	0.28	+0.2
1,169,056	-		TX73_005445	0.29	+0.5
1,169,085	+		TX73_005445	0.30	-1.0
1,169,093	-		TX73_005445	0.30	-0.4
1,169,098	-		TX73_005445	0.31	+0.2
1,169,146	+		TX73_005445	0.33	-0.2
1,169,195	-		TX73_005445	0.35	-2.9
1,169,265	+		TX73_005445	0.38	-1.8
1,169,382	-		TX73_005445	0.43	-0.0
1,169,393	-		TX73_005445	0.44	+0.2
1,169,393	-		TX73_005445	0.44	-0.4
1,169,393	-		TX73_005445	0.44	-0.1
1,169,457	-		TX73_005445	0.47	+0.2
1,169,490	-		TX73_005445	0.48	+0.1
1,169,542	+		TX73_005445	0.51	+0.8
1,169,610	+		TX73_005445	0.54	-1.3
1,169,618	-		TX73_005445	0.54	-0.0
1,169,661	-		TX73_005445	0.56	-0.8
1,169,794	+		TX73_005445	0.62	-0.6
1,169,802	-		TX73_005445	0.62	-0.8
1,169,871	+		TX73_005445	0.65	-0.5
1,169,878	-		TX73_005445	0.66	+0.5
1,169,887	+		TX73_005445	0.66	+0.5
1,169,944	+		TX73_005445	0.69	+0.2
1,169,973	+		TX73_005445	0.70	+1.0
1,169,976	+		TX73_005445	0.70	+0.3
1,169,999	+		TX73_005445	0.71	+0.1
1,170,001	-		TX73_005445	0.71	+0.3
1,170,120	-		TX73_005445	0.77	+0.6
1,170,134	-		TX73_005445	0.77	-0.2
1,170,151	+		TX73_005445	0.78	-0.2
1,170,151	+		TX73_005445	0.78	+0.9
1,170,249	+		TX73_005445	0.82	+0.5
1,170,353	+		TX73_005445	0.87	+1.5
1,170,357	+		TX73_005445	0.87	-0.2
1,170,424	+				+1.0
1,170,430	+				+0.8
1,170,431	-				+0.4
1,170,446	+				+1.8
1,170,465	+				+1.3
1,170,478	+				-0.0
1,170,539	-				+0.7
1,170,563	-				-0.3
1,170,614	-				-0.7
1,170,617	-				+1.2
1,170,641	+				-0.7
1,170,654	-				+0.7
1,170,678	+				-0.1
1,170,681	-				+0.9
1,170,702	+		TX73_005450	0.13	+0.2
1,170,713	+		TX73_005450	0.16	-0.2
1,170,732	+		TX73_005450	0.20	+0.1
1,170,745	+		TX73_005450	0.23	+1.3
1,170,755	-		TX73_005450	0.25	+0.2
1,170,768	-		TX73_005450	0.28	+0.7
1,170,804	-		TX73_005450	0.36	+0.3
1,170,817	-		TX73_005450	0.39	+0.0
1,170,857	+		TX73_005450	0.48	-0.4
1,170,900	-		TX73_005450	0.58	-1.7
1,170,912	+		TX73_005450	0.60	+0.9
1,170,920	-		TX73_005450	0.62	-2.6
1,170,930	-		TX73_005450	0.64	+0.8
1,170,930	-		TX73_005450	0.64	-0.1
1,170,930	-		TX73_005450	0.64	+0.4
1,170,957	-		TX73_005450	0.70	-0.2
1,170,957	-		TX73_005450	0.70	-0.2
1,170,958	-		TX73_005450	0.71	+0.5
1,171,006	+		TX73_005450	0.82	+0.5
1,171,039	+		TX73_005450	0.89	-0.4
1,171,039	+		TX73_005450	0.89	-0.4
1,171,051	+				-0.2
1,171,056	+				-0.2
1,171,056	+				-0.4
1,171,079	-				+0.9
1,171,082	-				-0.8
1,171,114	+				+0.7
1,171,117	-				-1.0
1,171,122	-				+0.5
1,171,150	-				-0.2
1,171,166	-		TX73_005455	0.10	-0.4
1,171,192	+		TX73_005455	0.13	+0.2
1,171,200	-		TX73_005455	0.14	-0.3
1,171,210	+		TX73_005455	0.15	+1.2
1,171,233	-		TX73_005455	0.18	+0.0
1,171,238	-		TX73_005455	0.18	+0.0
1,171,257	-		TX73_005455	0.21	-0.8
1,171,258	+		TX73_005455	0.21	-1.0
1,171,260	+		TX73_005455	0.21	-0.3
1,171,283	+		TX73_005455	0.24	+0.3
1,171,299	-		TX73_005455	0.26	-0.4
1,171,330	-		TX73_005455	0.29	-0.2
1,171,347	+		TX73_005455	0.31	+0.0
1,171,347	+		TX73_005455	0.31	+0.0
1,171,347	+		TX73_005455	0.31	-0.8
1,171,347	+		TX73_005455	0.31	+0.0
1,171,347	+		TX73_005455	0.31	-0.5
1,171,347	+		TX73_005455	0.31	+0.8
1,171,355	-		TX73_005455	0.32	-0.9
1,171,355	-		TX73_005455	0.32	-0.1
1,171,355	-		TX73_005455	0.32	-1.7
1,171,371	+		TX73_005455	0.34	+0.1
1,171,374	-		TX73_005455	0.34	-0.5
1,171,379	-		TX73_005455	0.35	-0.3
1,171,413	+		TX73_005455	0.39	-0.5
1,171,470	+		TX73_005455	0.46	-0.6
1,171,505	+		TX73_005455	0.50	-1.6
1,171,519	+		TX73_005455	0.51	+0.0
1,171,519	+		TX73_005455	0.51	+1.1
1,171,527	+		TX73_005455	0.52	-0.0
1,171,527	+		TX73_005455	0.52	+0.2
1,171,527	-		TX73_005455	0.52	-0.7
1,171,535	-		TX73_005455	0.53	+1.2