Experiment: starvation expt 4; 3 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_003345 and TX73_003350 are separated by 5 nucleotides TX73_003350 and TX73_003355 are separated by 24 nucleotides TX73_003355 and TX73_003360 are separated by 21 nucleotides
TX73_003345: TX73_003345 - flagellar hook protein FlgE, at 713,112 to 714,377
_003345
TX73_003350: TX73_003350 - hypothetical protein, at 714,383 to 714,640
_003350
TX73_003355: TX73_003355 - flagellar protein FlgN, at 714,665 to 715,117
_003355
TX73_003360: TX73_003360 - flagellar hook-associated protein FlgK, at 715,139 to 716,902
_003360
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1 at 713.675 kb on - strand, within TX73_003345 at 713.711 kb on + strand, within TX73_003345 at 713.719 kb on - strand, within TX73_003345 at 713.719 kb on - strand, within TX73_003345 at 714.029 kb on + strand, within TX73_003345 at 714.195 kb on + strand, within TX73_003345 at 714.203 kb on - strand, within TX73_003345 at 714.228 kb on + strand, within TX73_003345 at 714.442 kb on + strand, within TX73_003350 at 714.449 kb on - strand, within TX73_003350 at 714.608 kb on + strand, within TX73_003350 at 714.612 kb on + strand, within TX73_003350 at 714.612 kb on + strand, within TX73_003350 at 714.620 kb on - strand at 714.690 kb on - strand at 714.778 kb on + strand, within TX73_003355 at 714.786 kb on - strand, within TX73_003355 at 714.905 kb on - strand, within TX73_003355 at 714.905 kb on - strand, within TX73_003355 at 714.940 kb on - strand, within TX73_003355 at 715.054 kb on + strand, within TX73_003355 at 715.062 kb on - strand, within TX73_003355 at 715.116 kb on + strand at 715.124 kb on - strand at 715.144 kb on + strand at 715.144 kb on + strand at 715.192 kb on + strand at 715.200 kb on - strand at 715.373 kb on - strand, within TX73_003360 at 715.429 kb on - strand, within TX73_003360 at 715.429 kb on - strand, within TX73_003360 at 715.429 kb on - strand, within TX73_003360 at 715.431 kb on + strand, within TX73_003360 at 715.431 kb on - strand, within TX73_003360 at 715.439 kb on + strand, within TX73_003360 at 715.471 kb on + strand, within TX73_003360 at 715.528 kb on - strand, within TX73_003360 at 715.543 kb on + strand, within TX73_003360 at 715.546 kb on - strand, within TX73_003360 at 715.665 kb on + strand, within TX73_003360 at 715.825 kb on + strand, within TX73_003360 at 715.833 kb on - strand, within TX73_003360 at 715.860 kb on - strand, within TX73_003360 at 715.868 kb on - strand, within TX73_003360 at 715.884 kb on - strand, within TX73_003360 at 715.897 kb on + strand, within TX73_003360 at 716.031 kb on - strand, within TX73_003360 at 716.074 kb on + strand, within TX73_003360 at 716.074 kb on + strand, within TX73_003360 at 716.087 kb on - strand, within TX73_003360
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 4; 3 days; outgrowth in CAAc remove 713,675 - TX73_003345 0.44 -0.4 713,711 + TX73_003345 0.47 -0.7 713,719 - TX73_003345 0.48 +0.7 713,719 - TX73_003345 0.48 -0.1 714,029 + TX73_003345 0.72 -0.2 714,195 + TX73_003345 0.86 -0.9 714,203 - TX73_003345 0.86 -1.0 714,228 + TX73_003345 0.88 +0.1 714,442 + TX73_003350 0.23 -0.6 714,449 - TX73_003350 0.26 +1.3 714,608 + TX73_003350 0.87 -0.3 714,612 + TX73_003350 0.89 -0.9 714,612 + TX73_003350 0.89 +0.5 714,620 - -2.3 714,690 - -0.4 714,778 + TX73_003355 0.25 +0.9 714,786 - TX73_003355 0.27 +0.9 714,905 - TX73_003355 0.53 +1.5 714,905 - TX73_003355 0.53 +0.1 714,940 - TX73_003355 0.61 -0.6 715,054 + TX73_003355 0.86 -0.0 715,062 - TX73_003355 0.88 +0.3 715,116 + +1.3 715,124 - -0.0 715,144 + +0.2 715,144 + +0.7 715,192 + -0.5 715,200 - +0.0 715,373 - TX73_003360 0.13 +0.2 715,429 - TX73_003360 0.16 +0.0 715,429 - TX73_003360 0.16 -0.7 715,429 - TX73_003360 0.16 +0.0 715,431 + TX73_003360 0.17 -0.5 715,431 - TX73_003360 0.17 -0.6 715,439 + TX73_003360 0.17 +0.5 715,471 + TX73_003360 0.19 -1.1 715,528 - TX73_003360 0.22 -0.6 715,543 + TX73_003360 0.23 -0.8 715,546 - TX73_003360 0.23 +0.4 715,665 + TX73_003360 0.30 -0.7 715,825 + TX73_003360 0.39 +1.4 715,833 - TX73_003360 0.39 -1.0 715,860 - TX73_003360 0.41 +0.2 715,868 - TX73_003360 0.41 +0.2 715,884 - TX73_003360 0.42 +0.7 715,897 + TX73_003360 0.43 +0.9 716,031 - TX73_003360 0.51 +0.0 716,074 + TX73_003360 0.53 +0.3 716,074 + TX73_003360 0.53 +0.8 716,087 - TX73_003360 0.54 -0.3
Or see this region's nucleotide sequence