Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002570

Experiment: starvation expt 3; 3 days; outgrowth in CAAc

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002565 and TX73_002570 are separated by 23 nucleotidesTX73_002570 and TX73_002575 are separated by 24 nucleotides TX73_002565: TX73_002565 - PAS domain S-box protein, at 546,798 to 550,043 _002565 TX73_002570: TX73_002570 - esterase-like activity of phytase family protein, at 550,067 to 551,215 _002570 TX73_002575: TX73_002575 - cobaltochelatase subunit CobT, at 551,240 to 553,144 _002575 Position (kb) 550 551 552Strain fitness (log2 ratio) -1 0 1 2 3at 549.067 kb on - strand, within TX73_002565at 549.078 kb on - strand, within TX73_002565at 549.093 kb on - strand, within TX73_002565at 549.128 kb on - strand, within TX73_002565at 549.156 kb on - strand, within TX73_002565at 549.192 kb on - strand, within TX73_002565at 549.220 kb on - strand, within TX73_002565at 549.232 kb on + strand, within TX73_002565at 549.248 kb on + strand, within TX73_002565at 549.256 kb on - strand, within TX73_002565at 549.259 kb on + strand, within TX73_002565at 549.349 kb on - strand, within TX73_002565at 549.390 kb on - strand, within TX73_002565at 549.410 kb on + strand, within TX73_002565at 549.426 kb on + strand, within TX73_002565at 549.426 kb on + strand, within TX73_002565at 549.434 kb on - strand, within TX73_002565at 549.454 kb on - strand, within TX73_002565at 549.462 kb on + strand, within TX73_002565at 549.480 kb on - strand, within TX73_002565at 549.493 kb on - strand, within TX73_002565at 549.516 kb on + strand, within TX73_002565at 549.521 kb on + strand, within TX73_002565at 549.524 kb on - strand, within TX73_002565at 549.588 kb on - strand, within TX73_002565at 549.593 kb on + strand, within TX73_002565at 549.602 kb on - strand, within TX73_002565at 549.608 kb on - strand, within TX73_002565at 549.635 kb on + strand, within TX73_002565at 549.635 kb on + strand, within TX73_002565at 549.645 kb on + strand, within TX73_002565at 549.647 kb on + strand, within TX73_002565at 549.668 kb on + strand, within TX73_002565at 549.692 kb on - strand, within TX73_002565at 549.730 kb on - strandat 549.737 kb on + strandat 549.752 kb on + strandat 549.768 kb on - strandat 549.808 kb on - strandat 549.945 kb on + strandat 549.947 kb on - strandat 549.983 kb on + strandat 549.999 kb on + strandat 550.021 kb on - strandat 550.050 kb on + strandat 550.106 kb on + strandat 550.265 kb on - strand, within TX73_002570at 550.287 kb on - strand, within TX73_002570at 550.296 kb on + strand, within TX73_002570at 550.296 kb on + strand, within TX73_002570at 550.325 kb on + strand, within TX73_002570at 550.354 kb on - strand, within TX73_002570at 550.354 kb on - strand, within TX73_002570at 550.354 kb on - strand, within TX73_002570at 550.354 kb on - strand, within TX73_002570at 550.359 kb on - strand, within TX73_002570at 550.383 kb on - strand, within TX73_002570at 550.389 kb on + strand, within TX73_002570at 550.458 kb on + strand, within TX73_002570at 550.466 kb on - strand, within TX73_002570at 550.466 kb on - strand, within TX73_002570at 550.466 kb on - strand, within TX73_002570at 550.466 kb on - strand, within TX73_002570at 550.552 kb on + strand, within TX73_002570at 550.552 kb on + strand, within TX73_002570at 550.560 kb on - strand, within TX73_002570at 550.576 kb on + strand, within TX73_002570at 550.648 kb on - strand, within TX73_002570at 550.690 kb on + strand, within TX73_002570at 550.714 kb on + strand, within TX73_002570at 550.737 kb on + strand, within TX73_002570at 550.757 kb on + strand, within TX73_002570at 550.780 kb on - strand, within TX73_002570at 550.780 kb on - strand, within TX73_002570at 550.780 kb on - strand, within TX73_002570at 550.793 kb on + strand, within TX73_002570at 550.798 kb on + strand, within TX73_002570at 550.823 kb on + strand, within TX73_002570at 550.892 kb on + strand, within TX73_002570at 550.902 kb on + strand, within TX73_002570at 550.940 kb on + strand, within TX73_002570at 550.948 kb on + strand, within TX73_002570at 550.953 kb on + strand, within TX73_002570at 551.002 kb on + strand, within TX73_002570at 551.002 kb on + strand, within TX73_002570at 551.008 kb on + strand, within TX73_002570at 551.023 kb on - strand, within TX73_002570at 551.025 kb on + strand, within TX73_002570at 551.033 kb on - strand, within TX73_002570at 551.049 kb on - strand, within TX73_002570at 551.068 kb on + strand, within TX73_002570at 551.086 kb on + strand, within TX73_002570at 551.201 kb on - strandat 551.213 kb on + strandat 551.236 kb on - strandat 551.236 kb on - strandat 551.295 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction starvation expt 3; 3 days; outgrowth in CAAc
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549,067 - TX73_002565 0.70 -0.3
549,078 - TX73_002565 0.70 -1.6
549,093 - TX73_002565 0.71 +0.2
549,128 - TX73_002565 0.72 +0.5
549,156 - TX73_002565 0.73 -0.2
549,192 - TX73_002565 0.74 -0.8
549,220 - TX73_002565 0.75 +1.5
549,232 + TX73_002565 0.75 +0.3
549,248 + TX73_002565 0.75 -0.1
549,256 - TX73_002565 0.76 +0.8
549,259 + TX73_002565 0.76 +0.3
549,349 - TX73_002565 0.79 +1.2
549,390 - TX73_002565 0.80 +0.5
549,410 + TX73_002565 0.80 +3.2
549,426 + TX73_002565 0.81 +0.4
549,426 + TX73_002565 0.81 +0.1
549,434 - TX73_002565 0.81 -0.2
549,454 - TX73_002565 0.82 +1.2
549,462 + TX73_002565 0.82 +0.3
549,480 - TX73_002565 0.83 +0.3
549,493 - TX73_002565 0.83 +0.2
549,516 + TX73_002565 0.84 +0.6
549,521 + TX73_002565 0.84 -0.1
549,524 - TX73_002565 0.84 -0.0
549,588 - TX73_002565 0.86 -0.4
549,593 + TX73_002565 0.86 -0.6
549,602 - TX73_002565 0.86 +0.9
549,608 - TX73_002565 0.87 +0.5
549,635 + TX73_002565 0.87 +0.6
549,635 + TX73_002565 0.87 -0.0
549,645 + TX73_002565 0.88 +0.5
549,647 + TX73_002565 0.88 +0.9
549,668 + TX73_002565 0.88 +0.2
549,692 - TX73_002565 0.89 +0.3
549,730 - -1.0
549,737 + +0.7
549,752 + +0.0
549,768 - -0.5
549,808 - +0.4
549,945 + -0.6
549,947 - +0.6
549,983 + +0.1
549,999 + -0.8
550,021 - +0.3
550,050 + +0.9
550,106 + +1.0
550,265 - TX73_002570 0.17 -0.8
550,287 - TX73_002570 0.19 -0.4
550,296 + TX73_002570 0.20 +0.4
550,296 + TX73_002570 0.20 +0.5
550,325 + TX73_002570 0.22 +0.3
550,354 - TX73_002570 0.25 +0.4
550,354 - TX73_002570 0.25 +0.0
550,354 - TX73_002570 0.25 +0.4
550,354 - TX73_002570 0.25 +0.2
550,359 - TX73_002570 0.25 -0.1
550,383 - TX73_002570 0.28 -0.7
550,389 + TX73_002570 0.28 -0.2
550,458 + TX73_002570 0.34 +0.5
550,466 - TX73_002570 0.35 +1.3
550,466 - TX73_002570 0.35 -1.2
550,466 - TX73_002570 0.35 +0.3
550,466 - TX73_002570 0.35 +0.8
550,552 + TX73_002570 0.42 -0.8
550,552 + TX73_002570 0.42 -1.2
550,560 - TX73_002570 0.43 +0.0
550,576 + TX73_002570 0.44 +0.7
550,648 - TX73_002570 0.51 -0.1
550,690 + TX73_002570 0.54 +0.2
550,714 + TX73_002570 0.56 +0.7
550,737 + TX73_002570 0.58 -0.4
550,757 + TX73_002570 0.60 -0.3
550,780 - TX73_002570 0.62 -0.2
550,780 - TX73_002570 0.62 +0.2
550,780 - TX73_002570 0.62 +0.7
550,793 + TX73_002570 0.63 +1.8
550,798 + TX73_002570 0.64 -0.1
550,823 + TX73_002570 0.66 +0.6
550,892 + TX73_002570 0.72 +0.7
550,902 + TX73_002570 0.73 +0.6
550,940 + TX73_002570 0.76 -1.0
550,948 + TX73_002570 0.77 -0.1
550,953 + TX73_002570 0.77 +0.1
551,002 + TX73_002570 0.81 -0.0
551,002 + TX73_002570 0.81 -0.1
551,008 + TX73_002570 0.82 -0.3
551,023 - TX73_002570 0.83 +0.6
551,025 + TX73_002570 0.83 -0.8
551,033 - TX73_002570 0.84 -0.9
551,049 - TX73_002570 0.85 -0.2
551,068 + TX73_002570 0.87 +0.1
551,086 + TX73_002570 0.89 +0.1
551,201 - +0.3
551,213 + -0.0
551,236 - +0.9
551,236 - -1.5
551,295 + -0.7

Or see this region's nucleotide sequence