Experiment: starvation expt 3; 3 days; outgrowth in CAAc
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002555 and TX73_002560 are separated by 300 nucleotides TX73_002560 and TX73_002565 are separated by 324 nucleotides
TX73_002555: TX73_002555 - DUF3108 domain-containing protein, at 544,995 to 545,867
_002555
TX73_002560: TX73_002560 - 50S ribosomal protein L28, at 546,168 to 546,473
_002560
TX73_002565: TX73_002565 - PAS domain S-box protein, at 546,798 to 550,043
_002565
Position (kb) 546
547 Strain fitness (log2 ratio) -2
-1
0
1
2 at 545.186 kb on + strand, within TX73_002555 at 545.204 kb on + strand, within TX73_002555 at 545.208 kb on + strand, within TX73_002555 at 545.208 kb on + strand, within TX73_002555 at 545.208 kb on + strand, within TX73_002555 at 545.208 kb on + strand, within TX73_002555 at 545.216 kb on - strand, within TX73_002555 at 545.216 kb on - strand, within TX73_002555 at 545.216 kb on - strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.218 kb on + strand, within TX73_002555 at 545.223 kb on + strand, within TX73_002555 at 545.223 kb on + strand, within TX73_002555 at 545.223 kb on + strand, within TX73_002555 at 545.223 kb on + strand, within TX73_002555 at 545.223 kb on + strand, within TX73_002555 at 545.226 kb on - strand, within TX73_002555 at 545.226 kb on - strand, within TX73_002555 at 545.226 kb on - strand, within TX73_002555 at 545.226 kb on - strand, within TX73_002555 at 545.231 kb on - strand, within TX73_002555 at 545.231 kb on - strand, within TX73_002555 at 545.236 kb on - strand, within TX73_002555 at 545.263 kb on + strand, within TX73_002555 at 545.271 kb on - strand, within TX73_002555 at 545.282 kb on - strand, within TX73_002555 at 545.282 kb on - strand, within TX73_002555 at 545.282 kb on - strand, within TX73_002555 at 545.291 kb on + strand, within TX73_002555 at 545.296 kb on + strand, within TX73_002555 at 545.301 kb on + strand, within TX73_002555 at 545.339 kb on + strand, within TX73_002555 at 545.339 kb on + strand, within TX73_002555 at 545.339 kb on + strand, within TX73_002555 at 545.339 kb on + strand, within TX73_002555 at 545.339 kb on + strand, within TX73_002555 at 545.339 kb on + strand, within TX73_002555 at 545.347 kb on - strand, within TX73_002555 at 545.348 kb on - strand, within TX73_002555 at 545.365 kb on - strand, within TX73_002555 at 545.370 kb on - strand, within TX73_002555 at 545.386 kb on - strand, within TX73_002555 at 545.386 kb on - strand, within TX73_002555 at 545.409 kb on + strand, within TX73_002555 at 545.419 kb on + strand, within TX73_002555 at 545.424 kb on + strand, within TX73_002555 at 545.464 kb on - strand, within TX73_002555 at 545.467 kb on + strand, within TX73_002555 at 545.467 kb on + strand, within TX73_002555 at 545.467 kb on + strand, within TX73_002555 at 545.467 kb on + strand, within TX73_002555 at 545.467 kb on + strand, within TX73_002555 at 545.467 kb on + strand, within TX73_002555 at 545.475 kb on - strand, within TX73_002555 at 545.475 kb on - strand, within TX73_002555 at 545.475 kb on - strand, within TX73_002555 at 545.475 kb on - strand, within TX73_002555 at 545.483 kb on - strand, within TX73_002555 at 545.484 kb on - strand, within TX73_002555 at 545.485 kb on - strand, within TX73_002555 at 545.490 kb on - strand, within TX73_002555 at 545.512 kb on + strand, within TX73_002555 at 545.512 kb on + strand, within TX73_002555 at 545.520 kb on - strand, within TX73_002555 at 545.520 kb on - strand, within TX73_002555 at 545.557 kb on + strand, within TX73_002555 at 545.578 kb on + strand, within TX73_002555 at 545.583 kb on + strand, within TX73_002555 at 545.583 kb on + strand, within TX73_002555 at 545.583 kb on + strand, within TX73_002555 at 545.583 kb on + strand, within TX73_002555 at 545.583 kb on + strand, within TX73_002555 at 545.583 kb on + strand, within TX73_002555 at 545.583 kb on + strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.591 kb on - strand, within TX73_002555 at 545.601 kb on + strand, within TX73_002555 at 545.609 kb on - strand, within TX73_002555 at 545.645 kb on - strand, within TX73_002555 at 545.676 kb on + strand, within TX73_002555 at 545.677 kb on + strand, within TX73_002555 at 545.681 kb on + strand, within TX73_002555 at 545.685 kb on - strand, within TX73_002555 at 545.689 kb on - strand, within TX73_002555 at 545.689 kb on - strand, within TX73_002555 at 545.705 kb on + strand, within TX73_002555 at 545.705 kb on + strand, within TX73_002555 at 545.725 kb on + strand, within TX73_002555 at 545.733 kb on - strand, within TX73_002555 at 545.733 kb on - strand, within TX73_002555 at 545.733 kb on - strand, within TX73_002555 at 545.733 kb on - strand, within TX73_002555 at 545.733 kb on - strand, within TX73_002555 at 545.743 kb on + strand, within TX73_002555 at 545.743 kb on + strand, within TX73_002555 at 545.748 kb on + strand, within TX73_002555 at 545.757 kb on + strand, within TX73_002555 at 545.762 kb on - strand, within TX73_002555 at 545.764 kb on + strand, within TX73_002555 at 545.764 kb on + strand, within TX73_002555 at 545.766 kb on - strand, within TX73_002555 at 545.767 kb on - strand, within TX73_002555 at 545.770 kb on + strand, within TX73_002555 at 545.770 kb on + strand, within TX73_002555 at 545.770 kb on + strand, within TX73_002555 at 545.772 kb on + strand, within TX73_002555 at 545.772 kb on + strand, within TX73_002555 at 545.772 kb on - strand, within TX73_002555 at 545.778 kb on - strand, within TX73_002555 at 545.780 kb on - strand at 545.780 kb on - strand at 545.780 kb on - strand at 545.790 kb on + strand at 545.793 kb on + strand at 545.797 kb on + strand at 545.802 kb on + strand at 545.802 kb on + strand at 545.810 kb on - strand at 545.810 kb on - strand at 545.825 kb on + strand at 545.844 kb on - strand at 545.854 kb on + strand at 545.875 kb on + strand at 545.875 kb on + strand at 545.880 kb on + strand at 545.886 kb on + strand at 545.912 kb on - strand at 545.918 kb on + strand at 545.951 kb on + strand at 545.951 kb on + strand at 545.959 kb on - strand at 545.982 kb on + strand at 545.990 kb on - strand at 546.007 kb on + strand at 546.015 kb on - strand at 546.017 kb on + strand at 546.048 kb on - strand at 546.064 kb on - strand at 546.064 kb on - strand at 546.064 kb on - strand at 546.440 kb on - strand, within TX73_002560 at 546.472 kb on + strand at 546.542 kb on - strand at 546.546 kb on + strand at 546.556 kb on + strand at 546.563 kb on - strand at 546.565 kb on + strand at 546.565 kb on + strand at 546.573 kb on - strand at 546.590 kb on - strand at 546.628 kb on + strand at 546.631 kb on + strand at 546.637 kb on - strand at 546.701 kb on + strand at 546.713 kb on - strand at 546.713 kb on - strand at 546.714 kb on + strand at 546.732 kb on - strand at 546.734 kb on + strand at 546.736 kb on + strand at 546.744 kb on - strand at 546.744 kb on - strand at 546.744 kb on - strand at 546.744 kb on - strand at 546.772 kb on + strand at 546.787 kb on - strand at 546.819 kb on + strand at 546.834 kb on - strand at 546.837 kb on - strand at 546.840 kb on + strand at 546.868 kb on - strand at 546.920 kb on + strand at 546.933 kb on + strand at 546.938 kb on + strand at 546.953 kb on + strand at 546.976 kb on - strand at 546.976 kb on - strand at 547.019 kb on - strand at 547.023 kb on + strand at 547.025 kb on + strand at 547.025 kb on + strand at 547.044 kb on + strand at 547.047 kb on + strand at 547.047 kb on + strand at 547.132 kb on + strand, within TX73_002565 at 547.161 kb on - strand, within TX73_002565 at 547.176 kb on - strand, within TX73_002565 at 547.186 kb on - strand, within TX73_002565 at 547.186 kb on - strand, within TX73_002565 at 547.272 kb on + strand, within TX73_002565 at 547.319 kb on + strand, within TX73_002565 at 547.369 kb on + strand, within TX73_002565 at 547.369 kb on + strand, within TX73_002565 at 547.369 kb on + strand, within TX73_002565 at 547.370 kb on - strand, within TX73_002565 at 547.377 kb on - strand, within TX73_002565 at 547.407 kb on + strand, within TX73_002565 at 547.423 kb on + strand, within TX73_002565 at 547.438 kb on - strand, within TX73_002565 at 547.442 kb on + strand, within TX73_002565 at 547.446 kb on - strand, within TX73_002565 at 547.446 kb on - strand, within TX73_002565
Per-strain Table
Position Strand Gene LocusTag Fraction starvation expt 3; 3 days; outgrowth in CAAc remove 545,186 + TX73_002555 0.22 +0.1 545,204 + TX73_002555 0.24 -0.0 545,208 + TX73_002555 0.24 +0.2 545,208 + TX73_002555 0.24 -0.6 545,208 + TX73_002555 0.24 -0.2 545,208 + TX73_002555 0.24 +0.6 545,216 - TX73_002555 0.25 -0.8 545,216 - TX73_002555 0.25 -1.7 545,216 - TX73_002555 0.25 +0.1 545,218 + TX73_002555 0.26 +0.4 545,218 + TX73_002555 0.26 +0.3 545,218 + TX73_002555 0.26 +0.8 545,218 + TX73_002555 0.26 -0.2 545,218 + TX73_002555 0.26 -0.5 545,218 + TX73_002555 0.26 +0.1 545,218 + TX73_002555 0.26 +0.0 545,218 + TX73_002555 0.26 +0.5 545,218 + TX73_002555 0.26 +1.3 545,223 + TX73_002555 0.26 -0.7 545,223 + TX73_002555 0.26 -0.8 545,223 + TX73_002555 0.26 -0.8 545,223 + TX73_002555 0.26 -0.8 545,223 + TX73_002555 0.26 -0.3 545,226 - TX73_002555 0.26 +0.1 545,226 - TX73_002555 0.26 -0.5 545,226 - TX73_002555 0.26 -0.7 545,226 - TX73_002555 0.26 +1.1 545,231 - TX73_002555 0.27 -0.6 545,231 - TX73_002555 0.27 +0.8 545,236 - TX73_002555 0.28 +0.9 545,263 + TX73_002555 0.31 -0.8 545,271 - TX73_002555 0.32 +0.8 545,282 - TX73_002555 0.33 -0.6 545,282 - TX73_002555 0.33 +0.5 545,282 - TX73_002555 0.33 -2.2 545,291 + TX73_002555 0.34 -0.7 545,296 + TX73_002555 0.34 -0.2 545,301 + TX73_002555 0.35 -0.0 545,339 + TX73_002555 0.39 +0.5 545,339 + TX73_002555 0.39 +0.6 545,339 + TX73_002555 0.39 -0.1 545,339 + TX73_002555 0.39 +0.3 545,339 + TX73_002555 0.39 +0.6 545,339 + TX73_002555 0.39 -0.0 545,347 - TX73_002555 0.40 +0.2 545,348 - TX73_002555 0.40 -1.0 545,365 - TX73_002555 0.42 +0.2 545,370 - TX73_002555 0.43 -0.2 545,386 - TX73_002555 0.45 +0.0 545,386 - TX73_002555 0.45 -0.2 545,409 + TX73_002555 0.47 -1.3 545,419 + TX73_002555 0.49 -0.5 545,424 + TX73_002555 0.49 +0.5 545,464 - TX73_002555 0.54 -0.4 545,467 + TX73_002555 0.54 -0.6 545,467 + TX73_002555 0.54 +0.9 545,467 + TX73_002555 0.54 +0.7 545,467 + TX73_002555 0.54 +0.9 545,467 + TX73_002555 0.54 -0.4 545,467 + TX73_002555 0.54 -0.5 545,475 - TX73_002555 0.55 +0.3 545,475 - TX73_002555 0.55 +0.8 545,475 - TX73_002555 0.55 +0.3 545,475 - TX73_002555 0.55 -0.5 545,483 - TX73_002555 0.56 -0.6 545,484 - TX73_002555 0.56 -1.1 545,485 - TX73_002555 0.56 -0.8 545,490 - TX73_002555 0.57 +0.5 545,512 + TX73_002555 0.59 +1.2 545,512 + TX73_002555 0.59 +0.2 545,520 - TX73_002555 0.60 -0.7 545,520 - TX73_002555 0.60 -0.3 545,557 + TX73_002555 0.64 -0.4 545,578 + TX73_002555 0.67 -0.2 545,583 + TX73_002555 0.67 -0.7 545,583 + TX73_002555 0.67 -0.4 545,583 + TX73_002555 0.67 +1.3 545,583 + TX73_002555 0.67 -0.6 545,583 + TX73_002555 0.67 +2.0 545,583 + TX73_002555 0.67 +0.4 545,583 + TX73_002555 0.67 +0.6 545,591 - TX73_002555 0.68 +0.4 545,591 - TX73_002555 0.68 -0.0 545,591 - TX73_002555 0.68 -0.3 545,591 - TX73_002555 0.68 +0.5 545,591 - TX73_002555 0.68 -0.4 545,591 - TX73_002555 0.68 +0.2 545,591 - TX73_002555 0.68 +0.1 545,591 - TX73_002555 0.68 +1.0 545,591 - TX73_002555 0.68 -0.6 545,591 - TX73_002555 0.68 -0.2 545,601 + TX73_002555 0.69 +0.1 545,609 - TX73_002555 0.70 -0.7 545,645 - TX73_002555 0.74 -0.3 545,676 + TX73_002555 0.78 -0.1 545,677 + TX73_002555 0.78 +0.1 545,681 + TX73_002555 0.79 +2.4 545,685 - TX73_002555 0.79 +0.4 545,689 - TX73_002555 0.79 -0.3 545,689 - TX73_002555 0.79 +0.3 545,705 + TX73_002555 0.81 -0.0 545,705 + TX73_002555 0.81 +0.3 545,725 + TX73_002555 0.84 -0.6 545,733 - TX73_002555 0.85 -0.3 545,733 - TX73_002555 0.85 +0.4 545,733 - TX73_002555 0.85 -0.5 545,733 - TX73_002555 0.85 -0.2 545,733 - TX73_002555 0.85 +0.3 545,743 + TX73_002555 0.86 -1.1 545,743 + TX73_002555 0.86 -0.0 545,748 + TX73_002555 0.86 +0.1 545,757 + TX73_002555 0.87 -0.4 545,762 - TX73_002555 0.88 -1.9 545,764 + TX73_002555 0.88 -0.2 545,764 + TX73_002555 0.88 -1.6 545,766 - TX73_002555 0.88 +0.7 545,767 - TX73_002555 0.88 -0.2 545,770 + TX73_002555 0.89 +0.3 545,770 + TX73_002555 0.89 -0.3 545,770 + TX73_002555 0.89 -0.0 545,772 + TX73_002555 0.89 -0.4 545,772 + TX73_002555 0.89 +0.0 545,772 - TX73_002555 0.89 +0.1 545,778 - TX73_002555 0.90 +0.5 545,780 - +0.3 545,780 - +0.3 545,780 - -0.3 545,790 + +0.3 545,793 + -1.2 545,797 + -0.7 545,802 + -0.3 545,802 + -0.5 545,810 - +0.0 545,810 - +0.1 545,825 + -0.3 545,844 - -0.7 545,854 + +0.8 545,875 + +0.4 545,875 + -0.3 545,880 + +0.1 545,886 + -0.3 545,912 - +0.1 545,918 + -0.5 545,951 + +0.2 545,951 + -0.4 545,959 - -0.1 545,982 + -0.5 545,990 - +0.2 546,007 + +0.6 546,015 - -1.1 546,017 + +0.3 546,048 - -0.1 546,064 - +0.7 546,064 - +1.1 546,064 - -0.4 546,440 - TX73_002560 0.89 -0.9 546,472 + +0.7 546,542 - +0.5 546,546 + +0.3 546,556 + +0.0 546,563 - +0.4 546,565 + -0.5 546,565 + +0.6 546,573 - +0.0 546,590 - +0.1 546,628 + +0.0 546,631 + +0.2 546,637 - -0.3 546,701 + +0.5 546,713 - -0.5 546,713 - -0.1 546,714 + +0.3 546,732 - +0.2 546,734 + -0.6 546,736 + -0.4 546,744 - -1.3 546,744 - -0.1 546,744 - +1.0 546,744 - -0.1 546,772 + +0.6 546,787 - +0.2 546,819 + +0.3 546,834 - -0.8 546,837 - +0.7 546,840 + -0.7 546,868 - +1.2 546,920 + +0.0 546,933 + -0.4 546,938 + +0.3 546,953 + +0.0 546,976 - +0.5 546,976 - +0.3 547,019 - +0.6 547,023 + -0.9 547,025 + +0.0 547,025 + +1.4 547,044 + -0.3 547,047 + +0.4 547,047 + +0.2 547,132 + TX73_002565 0.10 +0.3 547,161 - TX73_002565 0.11 +0.1 547,176 - TX73_002565 0.12 +0.7 547,186 - TX73_002565 0.12 -0.3 547,186 - TX73_002565 0.12 +1.6 547,272 + TX73_002565 0.15 +0.2 547,319 + TX73_002565 0.16 +0.2 547,369 + TX73_002565 0.18 +0.0 547,369 + TX73_002565 0.18 -0.3 547,369 + TX73_002565 0.18 -0.5 547,370 - TX73_002565 0.18 +0.2 547,377 - TX73_002565 0.18 +0.8 547,407 + TX73_002565 0.19 +0.7 547,423 + TX73_002565 0.19 +0.3 547,438 - TX73_002565 0.20 +0.0 547,442 + TX73_002565 0.20 +1.0 547,446 - TX73_002565 0.20 +0.3 547,446 - TX73_002565 0.20 +0.1
Or see this region's nucleotide sequence