Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014355

Experiment: starvation expt 2; 3 days; outgrowth in CAAc

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	starvation expt 2; 3 days; outgrowth in CAAc
3,140,861	+		TX73_014345	0.50	+0.2
3,140,879	+		TX73_014345	0.51	+0.2
3,140,883	+		TX73_014345	0.52	-0.4
3,140,891	-		TX73_014345	0.52	-0.8
3,140,899	+		TX73_014345	0.53	+0.6
3,140,899	+		TX73_014345	0.53	+0.3
3,140,907	-		TX73_014345	0.54	-0.3
3,140,920	+		TX73_014345	0.55	-0.3
3,140,939	+		TX73_014345	0.56	-0.5
3,140,947	-		TX73_014345	0.57	-0.8
3,140,947	-		TX73_014345	0.57	-0.8
3,140,947	-		TX73_014345	0.57	+0.6
3,141,019	-		TX73_014345	0.63	+0.9
3,141,029	-		TX73_014345	0.63	-0.2
3,141,029	-		TX73_014345	0.63	-0.1
3,141,118	-		TX73_014345	0.71	+0.9
3,141,123	-		TX73_014345	0.71	-0.2
3,141,124	+		TX73_014345	0.71	-0.0
3,141,137	-		TX73_014345	0.72	+0.1
3,141,142	-		TX73_014345	0.73	+0.4
3,141,142	-		TX73_014345	0.73	-0.1
3,141,156	+		TX73_014345	0.74	-0.7
3,141,162	-		TX73_014345	0.74	-0.5
3,141,173	+		TX73_014345	0.75	-0.3
3,141,181	-		TX73_014345	0.76	-0.3
3,141,185	-		TX73_014345	0.76	+0.4
3,141,196	-		TX73_014345	0.77	-1.2
3,141,211	+		TX73_014345	0.78	-0.2
3,141,211	+		TX73_014345	0.78	+0.8
3,141,211	+		TX73_014345	0.78	+0.5
3,141,211	+		TX73_014345	0.78	-0.3
3,141,211	+		TX73_014345	0.78	+1.1
3,141,211	+		TX73_014345	0.78	-0.8
3,141,216	-		TX73_014345	0.79	-0.1
3,141,219	+		TX73_014345	0.79	-0.2
3,141,219	-		TX73_014345	0.79	-0.0
3,141,219	-		TX73_014345	0.79	-0.3
3,141,219	-		TX73_014345	0.79	-0.2
3,141,219	-		TX73_014345	0.79	+0.3
3,141,252	-		TX73_014345	0.81	-1.4
3,141,259	+		TX73_014345	0.82	-0.3
3,141,261	+		TX73_014345	0.82	+1.1
3,141,275	+		TX73_014345	0.83	-0.0
3,141,300	-		TX73_014345	0.85	-0.4
3,141,304	+		TX73_014345	0.86	+0.7
3,141,318	+		TX73_014345	0.87	-0.4
3,141,323	+		TX73_014345	0.87	-0.7
3,141,328	+		TX73_014345	0.88	+0.7
3,141,336	-		TX73_014345	0.88	+0.1
3,141,348	-		TX73_014345	0.89	-0.1
3,141,352	+		TX73_014345	0.90	-1.3
3,141,382	-				+1.3
3,141,416	-				-0.4
3,141,416	-				+0.9
3,141,416	-				-0.0
3,141,418	+				+1.0
3,141,418	+				-0.4
3,141,426	-				+0.2
3,141,426	-				+0.8
3,141,433	+				+1.4
3,141,445	+				+0.4
3,141,458	+				+1.0
3,141,469	+				+0.6
3,141,474	+				+0.4
3,141,487	+				+0.1
3,141,514	-				+1.2
3,141,514	-				-0.4
3,141,531	+				+0.6
3,141,533	+				-0.0
3,141,543	+				+0.0
3,141,554	+				-0.0
3,141,607	+		TX73_014350	0.16	-0.4
3,141,609	+		TX73_014350	0.17	-0.3
3,141,668	+		TX73_014350	0.36	-0.2
3,141,673	+		TX73_014350	0.38	+0.1
3,141,673	+		TX73_014350	0.38	+0.0
3,141,676	-		TX73_014350	0.39	-0.0
3,141,678	+		TX73_014350	0.39	+0.1
3,141,686	-		TX73_014350	0.42	+0.4
3,141,704	+		TX73_014350	0.48	+0.6
3,141,704	+		TX73_014350	0.48	+0.2
3,141,716	-		TX73_014350	0.52	-1.1
3,141,718	+		TX73_014350	0.52	+0.9
3,141,723	+		TX73_014350	0.54	-0.5
3,141,724	+		TX73_014350	0.54	+0.3
3,141,725	+		TX73_014350	0.55	+0.4
3,141,731	+		TX73_014350	0.57	-0.3
3,141,731	+		TX73_014350	0.57	-0.6
3,141,733	-		TX73_014350	0.57	+0.2
3,141,738	+		TX73_014350	0.59	-0.2
3,141,739	-		TX73_014350	0.59	+1.3
3,141,746	-		TX73_014350	0.62	-0.2
3,141,768	+		TX73_014350	0.69	+0.2
3,141,801	+		TX73_014350	0.80	+0.1
3,141,824	-		TX73_014350	0.87	+1.7
3,141,829	-		TX73_014350	0.89	+0.9
3,141,831	+				+0.5
3,141,831	+				+0.1
3,141,831	+				+0.2
3,141,831	-				-0.3
3,141,833	+				-0.1
3,141,839	-				+0.7
3,141,839	-				+0.5
3,141,839	-				+1.9
3,141,841	+				-0.5
3,141,843	+				-0.5
3,141,845	+				-0.4
3,141,856	-				-0.6
3,141,864	-				-0.2
3,141,876	+				+0.5
3,141,876	+				+0.2
3,141,884	-				+0.0
3,141,885	+				-1.2
3,141,904	+				-0.7
3,141,904	+				+0.5
3,141,912	-				+0.3
3,141,912	-				-0.2
3,141,914	+				-0.3
3,141,919	+				-1.4
3,141,931	-				-0.4
3,141,931	-				+0.0
3,141,956	-				-2.4
3,141,973	+		TX73_014355	0.11	+0.7
3,141,979	+		TX73_014355	0.12	-0.3
3,141,981	+		TX73_014355	0.12	+0.6
3,141,987	-		TX73_014355	0.12	+0.0
3,141,990	+		TX73_014355	0.13	+0.1
3,142,031	+		TX73_014355	0.16	-0.2
3,142,041	+		TX73_014355	0.17	-0.2
3,142,094	+		TX73_014355	0.22	-0.6
3,142,100	-		TX73_014355	0.22	-0.5
3,142,100	-		TX73_014355	0.22	-0.3
3,142,100	-		TX73_014355	0.22	-0.2
3,142,102	+		TX73_014355	0.22	+0.4
3,142,115	+		TX73_014355	0.23	-0.3
3,142,123	-		TX73_014355	0.24	+0.1
3,142,129	+		TX73_014355	0.25	-0.2
3,142,129	+		TX73_014355	0.25	-0.6
3,142,137	-		TX73_014355	0.25	-0.6
3,142,163	-		TX73_014355	0.28	+0.8
3,142,171	+		TX73_014355	0.28	+0.9
3,142,179	-		TX73_014355	0.29	+1.0
3,142,183	+		TX73_014355	0.29	+0.1
3,142,189	+		TX73_014355	0.30	+0.2
3,142,197	-		TX73_014355	0.31	-0.5
3,142,198	-		TX73_014355	0.31	-0.1
3,142,208	+		TX73_014355	0.32	-0.9
3,142,223	+		TX73_014355	0.33	-1.7
3,142,249	+		TX73_014355	0.35	-0.4
3,142,257	-		TX73_014355	0.36	+0.1
3,142,258	-		TX73_014355	0.36	-0.1
3,142,290	+		TX73_014355	0.39	-0.8
3,142,298	-		TX73_014355	0.39	-0.2
3,142,300	+		TX73_014355	0.39	-0.7
3,142,303	+		TX73_014355	0.40	-0.9
3,142,311	-		TX73_014355	0.40	-0.3
3,142,322	+		TX73_014355	0.41	+0.8
3,142,354	-		TX73_014355	0.44	+0.2
3,142,357	+		TX73_014355	0.44	+0.6
3,142,362	+		TX73_014355	0.45	-0.3
3,142,362	+		TX73_014355	0.45	+1.8
3,142,362	+		TX73_014355	0.45	-0.3
3,142,365	-		TX73_014355	0.45	-0.7
3,142,365	-		TX73_014355	0.45	-0.7
3,142,370	-		TX73_014355	0.46	+0.1
3,142,370	-		TX73_014355	0.46	-1.0
3,142,370	-		TX73_014355	0.46	-0.9
3,142,370	-		TX73_014355	0.46	+0.4
3,142,380	+		TX73_014355	0.46	-0.6
3,142,389	+		TX73_014355	0.47	-1.7
3,142,395	+		TX73_014355	0.48	+0.4
3,142,400	+		TX73_014355	0.48	-0.3
3,142,404	+		TX73_014355	0.49	-0.3
3,142,405	+		TX73_014355	0.49	-0.5
3,142,406	-		TX73_014355	0.49	-0.1
3,142,412	-		TX73_014355	0.49	-1.7
3,142,419	+		TX73_014355	0.50	-0.8
3,142,446	+		TX73_014355	0.52	-0.2
3,142,475	+		TX73_014355	0.55	-0.4
3,142,486	+		TX73_014355	0.56	+1.0
3,142,486	+		TX73_014355	0.56	-0.2
3,142,486	+		TX73_014355	0.56	-0.0
3,142,594	+		TX73_014355	0.65	+0.7
3,142,594	+		TX73_014355	0.65	-0.0
3,142,594	+		TX73_014355	0.65	-0.9
3,142,599	+		TX73_014355	0.65	-1.5
3,142,599	+		TX73_014355	0.65	-1.3
3,142,600	+		TX73_014355	0.66	+0.1
3,142,602	-		TX73_014355	0.66	+0.7
3,142,602	-		TX73_014355	0.66	+0.2
3,142,604	-		TX73_014355	0.66	-0.1
3,142,648	+		TX73_014355	0.70	+1.2
3,142,654	-		TX73_014355	0.70	+0.1
3,142,656	-		TX73_014355	0.70	-0.1
3,142,656	-		TX73_014355	0.70	-0.1
3,142,677	+		TX73_014355	0.72	-0.3
3,142,685	-		TX73_014355	0.73	-3.2
3,142,689	+		TX73_014355	0.73	-0.6
3,142,689	+		TX73_014355	0.73	+0.6
3,142,689	+		TX73_014355	0.73	+0.8
3,142,689	+		TX73_014355	0.73	+0.7
3,142,689	+		TX73_014355	0.73	-0.7
3,142,697	-		TX73_014355	0.74	-0.2
3,142,702	+		TX73_014355	0.74	-0.2
3,142,702	-		TX73_014355	0.74	+0.6
3,142,710	+		TX73_014355	0.75	+0.4
3,142,710	-		TX73_014355	0.75	-1.1
3,142,748	+		TX73_014355	0.78	-0.5
3,142,758	+		TX73_014355	0.79	-0.3
3,142,761	-		TX73_014355	0.80	+1.1
3,142,763	+		TX73_014355	0.80	+0.8
3,142,766	-		TX73_014355	0.80	-0.5
3,142,771	-		TX73_014355	0.80	-0.1
3,142,778	+		TX73_014355	0.81	-1.3
3,142,780	+		TX73_014355	0.81	+0.8
3,142,799	-		TX73_014355	0.83	-0.3
3,142,814	-		TX73_014355	0.84	-0.3
3,142,820	-		TX73_014355	0.85	-1.5
3,142,835	-		TX73_014355	0.86	+0.4
3,142,837	-		TX73_014355	0.86	+0.2
3,142,868	-		TX73_014355	0.89	-0.6
3,142,868	-		TX73_014355	0.89	-0.6
3,142,868	-		TX73_014355	0.89	-0.5
3,142,868	-		TX73_014355	0.89	+0.8
3,142,893	+				+0.6
3,142,893	+				-0.1
3,142,893	+				-0.3
3,142,893	+				+0.4
3,142,893	+				+0.0
3,142,893	+				-0.3
3,142,893	+				+0.2
3,142,893	+				-0.8
3,142,893	+				+0.3
3,142,893	+				-0.3
3,142,893	+				+0.5
3,142,893	+				-0.0
3,142,893	+				-0.4
3,142,893	+				-1.2
3,142,893	-				-0.2
3,142,898	+				-1.2
3,142,898	+				+0.1
3,142,898	+				-0.2
3,142,901	-				-0.3
3,142,901	-				-1.1
3,142,901	-				+0.1
3,142,901	-				-1.1
3,142,901	-				-0.5
3,142,901	-				+1.9
3,142,901	-				+0.4
3,142,901	-				-0.7
3,142,901	-				-1.1
3,142,901	-				-0.5
3,142,901	-				+0.1
3,142,901	-				-1.0
3,142,901	-				+0.4
3,142,901	-				+3.4
3,142,906	-				+0.1
3,142,906	-				+0.9
3,142,906	-				+0.7
3,142,926	-				-0.2
3,142,931	+				+0.5
3,142,939	-				-0.0
3,142,949	+				+0.9
3,142,949	+				-0.5
3,142,949	+				-1.1
3,142,952	-				+0.4
3,142,957	-				+0.5
3,142,959	+				-1.1
3,142,959	+				+0.3
3,142,973	-				+0.9
3,142,976	+				-0.4
3,142,992	-				+0.8
3,142,992	-				-0.5
3,143,004	+				-0.4
3,143,004	+				-0.5
3,143,004	+				-0.6
3,143,004	+				+0.5
3,143,012	-				+0.1
3,143,023	-				-0.2
3,143,025	+				+0.1
3,143,033	-				-0.6
3,143,033	-				-0.1
3,143,092	-				+0.7
3,143,110	-				-0.1
3,143,123	+				+1.3
3,143,141	-				-0.2
3,143,161	+				+0.1
3,143,161	+				+1.3
3,143,164	-				-1.7
3,143,176	+				-1.0
3,143,187	+				+3.6
3,143,198	+				+0.2
3,143,208	+				-0.6
3,143,212	-				-0.1
3,143,213	+				+0.4
3,143,327	+				+1.0
3,143,327	+				-0.5
3,143,330	-				+0.6
3,143,330	-				-0.3
3,143,364	+		TX73_014360	0.11	-1.0
3,143,394	-		TX73_014360	0.14	-0.5
3,143,417	-		TX73_014360	0.17	-0.9
3,143,417	-		TX73_014360	0.17	-0.1
3,143,417	-		TX73_014360	0.17	-0.9
3,143,433	-		TX73_014360	0.18	-0.6
3,143,458	+		TX73_014360	0.21	-1.3
3,143,460	-		TX73_014360	0.21	-3.4
3,143,466	-		TX73_014360	0.22	-0.7
3,143,466	-		TX73_014360	0.22	-2.4
3,143,519	+		TX73_014360	0.28	-0.4
3,143,553	-		TX73_014360	0.31	-1.7
3,143,576	+		TX73_014360	0.34	+0.4
3,143,584	-		TX73_014360	0.34	-1.8
3,143,584	-		TX73_014360	0.34	-1.2
3,143,584	-		TX73_014360	0.34	-0.3
3,143,584	-		TX73_014360	0.34	-1.5
3,143,606	+		TX73_014360	0.37	+0.1
3,143,614	-		TX73_014360	0.38	-1.7
3,143,621	+		TX73_014360	0.38	-1.5
3,143,639	-		TX73_014360	0.40	-1.9
3,143,641	+		TX73_014360	0.40	+0.5
3,143,645	+		TX73_014360	0.41	-0.2
3,143,664	+		TX73_014360	0.43	-2.8
3,143,664	+		TX73_014360	0.43	-0.5
3,143,699	-		TX73_014360	0.47	-0.6
3,143,764	-		TX73_014360	0.53	-1.0
3,143,791	+		TX73_014360	0.56	+0.6
3,143,801	+		TX73_014360	0.57	-0.6
3,143,832	+		TX73_014360	0.61	-0.8
3,143,848	+		TX73_014360	0.62	+1.6
3,143,848	-		TX73_014360	0.62	-1.2
3,143,872	-		TX73_014360	0.65	+0.3
3,143,885	+		TX73_014360	0.66	+0.7
3,143,918	+		TX73_014360	0.70	-0.2